Rroxscaffold_7G00203840

Long chain base biosynthesis protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0007526
Physical Location & Seq
Reverse (-)
52821657 .. 52827780
6124 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00203840.1

Sequence Viewer

Length: 717 bp
ATGGGCTTAGCATCGAGCATTGCGACCCGGTTTTGGTGGCCTAGAAGGTCTGCGCCGAGTCTACAAGGCGTCACCACTAGCCGGCTTGATGAATTGTCTGCCGAGACCGCCGCCGCTATGACCGCCAACCACCCCGACTATGCTGCGCTTACCATAGAAACTGTTCCTTTTACCAATTCGGTTGAAAAGATAGATATAATTACTGCTGCAATGGGACACGCCTTAGCCGCAGAAGGAGGATTCTGCACCGGAAGTGCTAGAGTTACCGATCACCAGCGATTGAGCAGTTCTGGGTACGTCTTTTCAGCTTCTTTGCCCCCATATCTTGCGAGTGCTGCCATTACTGCCATTGATGTTCTTGAGGAGAACCCCGATCCGATAACGAAGTTGAAGAAAAACATTACGATTGTCAGTGTAATGGGGTTACTTATATTCAAGAAGCCTATAGTAAATTCAATAGACTTGGTGCTCGGCGGAGAGCTGGTGTTCAGCGGTTTTGGTCTTCAGTTAACGCTAATTGAAGAAGGTGGGATAGAAGCTCAATTGCAGCAAGAGTTGATGGAGTGTTTGCAAGACTTGAATAAGAGAGCTACACTGTGCCTTGATGCTGATGATGATGCGCAAGGAGGAGAATGCGAAGCTTGGTGGTGCAACAAGGAGGAGCTTACTGATGTTGGTGCTACAGTTTGGGGGTGGCGGAGCTATTTAGCAGAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0002178 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0005789 GO:0006066 GO:0006629 GO:0006643 GO:0006644 GO:0006665 GO:0006667 GO:0006670 GO:0006672 GO:0006684 GO:0006686 GO:0006793 GO:0006796 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0008610 GO:0008654 GO:0009058 GO:0009790 GO:0009791 GO:0009793 GO:0009825 GO:0009893 GO:0009894 GO:0009896 GO:0009987 GO:0010154 GO:0010506 GO:0010508 GO:0010941 GO:0012505 GO:0016020 GO:0016049 GO:0016239 GO:0016241 GO:0017059 GO:0019222 GO:0019637 GO:0019751 GO:0022414 GO:0030148 GO:0031211 GO:0031323 GO:0031325 GO:0031329 GO:0031331 GO:0031984 GO:0032501 GO:0032502 GO:0032991 GO:0034311 GO:0034312 GO:0034641 GO:0035339 GO:0040007 GO:0042175 GO:0043067 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044271 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044425 GO:0044432 GO:0044444 GO:0044446 GO:0044464 GO:0046165 GO:0046173 GO:0046467 GO:0046511 GO:0046512 GO:0046513 GO:0046519 GO:0046520 GO:0048316 GO:0048518 GO:0048522 GO:0048608 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0061458 GO:0065007 GO:0071704 GO:0090407 GO:0097164 GO:0098796 GO:0098827 GO:1901564 GO:1901566 GO:1901576 GO:1901615 GO:1901617 GO:1902494 GO:1904502 GO:1904504 GO:1905961 GO:1990234
KEGG Pathways
Metabolic & Signaling
ko00600 ko01100 ko04071 ko04138 map00600 map01100 map04071 map04138
Pfam Domains
Protein Families
Aminotran_1_2

Protein Analysis

238

Amino Acids

25.64

Weight (kDa)

4.53

Isoelectric Point (pI)

48.58

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 621
AccI GTMKAC 1 cut(s) 61
AciI CCGC 8 cut(s) 108, 111, 114, 123, 228, 474, 492, 697
AclWI GGATC 1 cut(s) 368
AcsI RAATTY 1 cut(s) 451
AcuI CTGAAG 1 cut(s) 488
AcyI GRCGYC 1 cut(s) 69
AfaI GTAC 1 cut(s) 296
AfiI CCNNNNNNNGG 2 cut(s) 33, 81
AgsI TTSAA 6 cut(s) 185, 391, 436, 456, 521, 580
AluBI AGCT 7 cut(s) 308, 481, 539, 590, 641, 664, 702
AluI AGCT 7 cut(s) 308, 481, 539, 590, 641, 664, 702
Alw21I GWGCWC 1 cut(s) 471
Alw26I GTCTC 1 cut(s) 98
AlwI GGATC 1 cut(s) 368
AoxI GGCC 1 cut(s) 38
ApeKI GCWGC 4 cut(s) 143, 206, 335, 547
ApoI RAATTY 1 cut(s) 451
Asp700I GAANNNNTTC 1 cut(s) 162
AspLEI GCGC 3 cut(s) 55, 148, 622
AsuC2I CCSGG 1 cut(s) 28
AsuHPI GGTGA 2 cut(s) 64, 263
BbsI GAAGAC 1 cut(s) 494
Bbv12I GWGCWC 1 cut(s) 471
BbvI GCAGC 4 cut(s) 130, 193, 322, 559
BccI CCATC 1 cut(s) 553
BcgI CGANNNNNNTGC 2 cut(s) 125, 159
BcnI CCSGG 1 cut(s) 28
BcoDI GTCTC 1 cut(s) 98
BfaI CTAG 3 cut(s) 42, 78, 258
BfmI CTRYAG 2 cut(s) 444, 681
BisI GCNGC 7 cut(s) 111, 114, 144, 207, 228, 336, 548
BlpI GCTNAGC 1 cut(s) 7
BlsI GCNGC 7 cut(s) 112, 115, 145, 208, 229, 337, 549
Bme1390I CCNGG 1 cut(s) 28
BmrFI CCNGG 1 cut(s) 28
BmsI GCATC 3 cut(s) 20, 595, 607
BpiI GAAGAC 1 cut(s) 494
Bpu10I CCTNAGC 1 cut(s) 223
Bpu1102I GCTNAGC 1 cut(s) 7
BpuEI CTTGAG 1 cut(s) 380
BpuMI CCSGG 1 cut(s) 28
BsaHI GRCGYC 1 cut(s) 69
BsaI GGTCTC 1 cut(s) 98
BsaWI WCCGGW 1 cut(s) 248
BsaXI ACNNNNNCTCC 2 cut(s) 468, 498
Bsc4I CCNNNNNNNGG 2 cut(s) 33, 81
Bse118I RCCGGY 1 cut(s) 81
Bse3DI GCAATG 2 cut(s) 18, 216
BseLI CCNNNNNNNGG 2 cut(s) 33, 81
BseMI GCAATG 2 cut(s) 18, 216
BseRI GAGGAG 3 cut(s) 377, 642, 674
BseXI GCAGC 4 cut(s) 130, 193, 322, 559
BsgI GTGCAG 1 cut(s) 229
BshFI GGCC 1 cut(s) 40
BsiHKAI GWGCWC 1 cut(s) 471
BsiSI CCGG 3 cut(s) 28, 82, 249
BslFI GGGAC 1 cut(s) 228
BslI CCNNNNNNNGG 2 cut(s) 33, 81
BsmAI GTCTC 1 cut(s) 98
BsmFI GGGAC 1 cut(s) 228
BsmI GAATGC 1 cut(s) 638
BsnI GGCC 1 cut(s) 40
Bso31I GGTCTC 1 cut(s) 98
Bsp1286I GDGCHC 1 cut(s) 471
Bsp143I GATC 2 cut(s) 268, 373
Bsp1720I GCTNAGC 1 cut(s) 7
BspACI CCGC 8 cut(s) 108, 111, 114, 123, 228, 474, 492, 697
BspANI GGCC 1 cut(s) 40
BspPI GGATC 1 cut(s) 368
BspTNI GGTCTC 1 cut(s) 98
BsrDI GCAATG 2 cut(s) 18, 216
BsrFI RCCGGY 1 cut(s) 81
BssAI RCCGGY 1 cut(s) 81
BssMI GATC 2 cut(s) 268, 373
BssNI GRCGYC 1 cut(s) 69
Bst4CI ACNGT 3 cut(s) 163, 597, 685
BstACI GRCGYC 1 cut(s) 69
BstC8I GCNNGC 1 cut(s) 83
BstDEI CTNAG 2 cut(s) 7, 223
BstHHI GCGC 3 cut(s) 55, 148, 622
BstKTI GATC 2 cut(s) 271, 376
BstMAI GTCTC 1 cut(s) 98
BstMBI GATC 2 cut(s) 268, 373
BstMWI GCNNNNNNNGC 5 cut(s) 107, 122, 227, 335, 344
BstSCI CCNGG 1 cut(s) 26
BstSFI CTRYAG 2 cut(s) 444, 681
BstV1I GCAGC 4 cut(s) 130, 193, 322, 559
BstV2I GAAGAC 1 cut(s) 494
BsuRI GGCC 1 cut(s) 40
BtsIMutI CAGTG 2 cut(s) 418, 593
Cac8I GCNNGC 1 cut(s) 83
CfoI GCGC 3 cut(s) 55, 148, 622
Cfr10I RCCGGY 1 cut(s) 81
CseI GACGC 1 cut(s) 58
Csp6I GTAC 1 cut(s) 295
CviQI GTAC 1 cut(s) 295
DdeI CTNAG 2 cut(s) 7, 223
DpnI GATC 2 cut(s) 270, 375
DpnII GATC 2 cut(s) 268, 373
EciI GGCGGA 2 cut(s) 489, 712
Eco31I GGTCTC 1 cut(s) 98
Eco57I CTGAAG 1 cut(s) 488
FaiI YATR 7 cut(s) 119, 141, 155, 197, 322, 431, 446
FaqI GGGAC 1 cut(s) 228
FblI GTMKAC 1 cut(s) 61
Fnu4HI GCNGC 7 cut(s) 111, 114, 144, 207, 228, 336, 548
Fsp4HI GCNGC 7 cut(s) 111, 114, 144, 207, 228, 336, 548
FspBI CTAG 3 cut(s) 42, 78, 258
FspI TGCGCA 1 cut(s) 621
GlaI GCGC 3 cut(s) 54, 147, 621
GluI GCNGC 7 cut(s) 111, 114, 144, 207, 228, 336, 548
HaeIII GGCC 1 cut(s) 40
HapII CCGG 3 cut(s) 28, 82, 249
HgaI GACGC 1 cut(s) 58
HhaI GCGC 3 cut(s) 55, 148, 622
Hin1I GRCGYC 1 cut(s) 69
Hin6I GCGC 3 cut(s) 53, 146, 620
HinP1I GCGC 3 cut(s) 53, 146, 620
HincII GTYRAC 1 cut(s) 510
HindII GTYRAC 1 cut(s) 510
HindIII AAGCTT 1 cut(s) 639
HinfI GANTC 2 cut(s) 58, 240
HpaI GTTAAC 1 cut(s) 510
HpaII CCGG 3 cut(s) 28, 82, 249
HphI GGTGA 2 cut(s) 64, 263
Hpy166II GTNNAC 2 cut(s) 62, 510
Hpy188I TCNGA 1 cut(s) 378
Hpy188III TCNNGA 2 cut(s) 359, 436
Hpy8I GTNNAC 2 cut(s) 62, 510
HpyAV CCTTC 3 cut(s) 39, 227, 518
HpyCH4III ACNGT 3 cut(s) 163, 597, 685
HpyCH4IV ACGT 1 cut(s) 297
HpyCH4V TGCA 5 cut(s) 209, 246, 547, 571, 651
HpyF10VI GCNNNNNNNGC 5 cut(s) 107, 122, 227, 335, 344
HpyF3I CTNAG 2 cut(s) 7, 223
HpySE526I ACGT 1 cut(s) 297
Hsp92I GRCGYC 1 cut(s) 69
HspAI GCGC 3 cut(s) 53, 146, 620
KroI GCCGGC 1 cut(s) 81
KroNI GCCGGC 1 cut(s) 83
KspAI GTTAAC 1 cut(s) 510
Kzo9I GATC 2 cut(s) 268, 373
LmnI GCTCC 2 cut(s) 661, 699
LpnPI CCDG 6 cut(s) 41, 95, 262, 276, 287, 467
Lsp1109I GCAGC 4 cut(s) 130, 193, 322, 559
LweI GCATC 3 cut(s) 20, 595, 607
MaeI CTAG 3 cut(s) 42, 78, 258
MaeII ACGT 1 cut(s) 297
MaeIII GTNAC 3 cut(s) 70, 262, 423
MalI GATC 2 cut(s) 270, 375
MboI GATC 2 cut(s) 268, 373
MboII GAAGA 3 cut(s) 403, 494, 533
MfeI CAATTG 1 cut(s) 542
MhlI GDGCHC 1 cut(s) 471
MluCI AATT 6 cut(s) 92, 175, 198, 451, 516, 542
MlyI GAGTC 1 cut(s) 67
MnlI CCTC 4 cut(s) 230, 355, 620, 652
MroNI GCCGGC 1 cut(s) 81
MroXI GAANNNNTTC 1 cut(s) 162
MseI TTAA 1 cut(s) 509
MspA1I CMGCKG 1 cut(s) 492
MspI CCGG 3 cut(s) 28, 82, 249
MspR9I CCNGG 1 cut(s) 28
MunI CAATTG 1 cut(s) 542
Mva1269I GAATGC 1 cut(s) 638
MwoI GCNNNNNNNGC 5 cut(s) 107, 122, 227, 335, 344
NaeI GCCGGC 1 cut(s) 83
NciI CCSGG 1 cut(s) 28
NdeII GATC 2 cut(s) 268, 373
NgoMIV GCCGGC 1 cut(s) 81
NmeAIII GCCGAG 3 cut(s) 81, 127, 450
NmuCI GTSAC 1 cut(s) 70
NsbI TGCGCA 1 cut(s) 621
PcsI WCGNNNNNNNCGW 1 cut(s) 20
PctI GAATGC 1 cut(s) 638
PdiI GCCGGC 1 cut(s) 83
PdmI GAANNNNTTC 1 cut(s) 162
PfeI GAWTC 1 cut(s) 240
PkrI GCNGC 7 cut(s) 112, 115, 145, 208, 229, 337, 549
PleI GAGTC 1 cut(s) 66
PpsI GAGTC 1 cut(s) 66
RsaI GTAC 1 cut(s) 296
RsaNI GTAC 1 cut(s) 295
SaqAI TTAA 1 cut(s) 509
SatI GCNGC 7 cut(s) 111, 114, 144, 207, 228, 336, 548
Sau3AI GATC 2 cut(s) 268, 373
SchI GAGTC 1 cut(s) 67
ScrFI CCNGG 1 cut(s) 28
SduI GDGCHC 1 cut(s) 471
SfaNI GCATC 3 cut(s) 20, 595, 607
SfcI CTRYAG 2 cut(s) 444, 681
SmlI CTYRAG 1 cut(s) 359
SmoI CTYRAG 1 cut(s) 359
Sse9I AATT 6 cut(s) 92, 175, 198, 451, 516, 542
SsiI CCGC 8 cut(s) 108, 111, 114, 123, 228, 474, 492, 697
SspMI CTAG 3 cut(s) 42, 78, 258
StyD4I CCNGG 1 cut(s) 26
TaaI ACNGT 3 cut(s) 163, 597, 685
TaiI ACGT 1 cut(s) 300
TaqI TCGA 1 cut(s) 14
TasI AATT 6 cut(s) 92, 175, 198, 451, 516, 542
TauI GCSGC 3 cut(s) 113, 116, 230
TfiI GAWTC 1 cut(s) 240
Tru1I TTAA 1 cut(s) 509
Tru9I TTAA 1 cut(s) 509
TscAI CASTG 2 cut(s) 418, 600
TseFI GTSAC 1 cut(s) 70
TseI GCWGC 4 cut(s) 143, 206, 335, 547
Tsp45I GTSAC 1 cut(s) 70
TspDTI ATGAA 1 cut(s) 105
TspRI CASTG 2 cut(s) 418, 600
XapI RAATTY 1 cut(s) 451
XmiI GTMKAC 1 cut(s) 61
XmnI GAANNNNTTC 1 cut(s) 162
XspI CTAG 3 cut(s) 42, 78, 258
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.