Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr03

Orthogroup ID

OG0007532

Physical Location & Seq

Genomic Coordinates Forward (+)

3959360 .. 3959746

Gene Structure 387 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD03G1049300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 387 bp

ATGACATGCAACTGGAGAAACCCGATCACAACGTGCCTCGTCCATATCTTGTTTGTGATATTAGTTTGCTACCCAAAACTAATATTGCCCACAATTATCCTCTACCTCTTTGTGATTGGCATATGGAACTACTGGTTCAGGCCAAGGCACCCACCTCACATGGATGCTCGGCTTTCAAGGGCAGACTTTGCCCATCCGGATGAGTTGGACGAGGAATTTGACAGCTTCCCCACGAGTCGACCCTCGGACATTGTGAGTATGAGGTACGACAAGTTGCGTAGCGTGGCGGGCAGGGTGGGGTGGGGGTTGCAGGGGAAGTGGGGTGTTTGGGTTGCAGGGAAGGGAAGGGTTCGGGGAAGAAGATGTTTTTTTTTTTTTTTTTTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005509 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005783 GO:0005829 GO:0007154 GO:0007165 GO:0008150 GO:0009987 GO:0012505 GO:0016020 GO:0016021 GO:0019722 GO:0019932 GO:0023052 GO:0031224 GO:0031974 GO:0031981 GO:0035556 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044425 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0046872 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0065007 GO:0070013

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

C2 PRT_C

Protein Analysis

129

Amino Acids

15.14

Weight (kDa)

9.69

Isoelectric Point (pI)

41.39

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PRT_C	PF08372	29 - 99	2.2e-31	Plant phosphoribosyltransferase C-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0007532)

Species	Orthologous Gene IDs
malus_domestica	MD03G1049300.v1.1
rosa_chinensis	RchiOBHm_Chr2g0107641 RchiOBHm_Chr2g0171191 RchiOBHm_Chr7g0217211
rosa_laevigata	RLG00000016544 RLG00000018440 RLG00000018516
rosa_multiflora	Rmu_sc0000070.1_g000056 Rmu_sc0000147.1_g000002 Rmu_sc0001149.1_g000002 Rmu_sc0001513.1_g000002 Rmu_sc0004372.1_g000001 Rmu_sc0005690.1_g000022 Rmu_sc0007586.1_g000003 Rmu_sc0007734.1_g000006 Rmu_sc0010274.1_g000012
rosa_roxburghii	Rroxscaffold_3G00257030
rosa_samantha	Rh2BG208200 Rh2CG200900 Rh2CG606400 Rh2DG654500 Rh2DG654600 Rh7AG279600 Rh7AG306200 Rh7CG325300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	147
AccI	GTMKAC	1 cut(s)	238
AccIII	TCCGGA	1 cut(s)	196
AciI	CCGC	1 cut(s)	287
AcsI	RAATTY	1 cut(s)	215
AdeI	CACNNNGTG	1 cut(s)	33
AfaI	GTAC	1 cut(s)	266
AgsI	TTSAA	1 cut(s)	177
AluBI	AGCT	1 cut(s)	225
AluI	AGCT	1 cut(s)	225
Aor13HI	TCCGGA	1 cut(s)	196
AoxI	GGCC	1 cut(s)	140
ApoI	RAATTY	1 cut(s)	215
ArsI	GACNNNNNNTTYG	2 cut(s)	200, 232
BanI	GGYRCC	1 cut(s)	147
BauI	CACGAG	1 cut(s)	232
BccI	CCATC	1 cut(s)	201
BmiI	GGNNCC	1 cut(s)	149
BmsI	GCATC	1 cut(s)	154
BpmI	CTGGAG	1 cut(s)	34
BsaJI	CCNNGG	2 cut(s)	143, 243
BsaWI	WCCGGW	1 cut(s)	196
Bse1I	ACTGG	2 cut(s)	17, 137
BseAI	TCCGGA	1 cut(s)	196
BseDI	CCNNGG	2 cut(s)	143, 243
BseGI	GGATG	3 cut(s)	169, 193, 205
BseNI	ACTGG	2 cut(s)	17, 137
BshFI	GGCC	1 cut(s)	142
BshNI	GGYRCC	1 cut(s)	147
BsiSI	CCGG	1 cut(s)	197
BsnI	GGCC	1 cut(s)	142
Bsp13I	TCCGGA	1 cut(s)	196
Bsp143I	GATC	1 cut(s)	24
BspACI	CCGC	1 cut(s)	287
BspANI	GGCC	1 cut(s)	142
BspEI	TCCGGA	1 cut(s)	196
BspLI	GGNNCC	1 cut(s)	149
BspT107I	GGYRCC	1 cut(s)	147
BsrI	ACTGG	2 cut(s)	17, 137
BssECI	CCNNGG	2 cut(s)	143, 243
BssMI	GATC	1 cut(s)	24
BssSI	CACGAG	1 cut(s)	232
BssT1I	CCWWGG	1 cut(s)	143
Bst2BI	CACGAG	1 cut(s)	232
BstAPI	GCANNNNNTGC	1 cut(s)	188
BstC8I	GCNNGC	1 cut(s)	289
BstF5I	GGATG	3 cut(s)	169, 193, 205
BstKTI	GATC	1 cut(s)	27
BstMBI	GATC	1 cut(s)	24
BstMWI	GCNNNNNNNGC	2 cut(s)	188, 288
BstNSI	RCATGY	1 cut(s)	9
BsuRI	GGCC	1 cut(s)	142
BtsCI	GGATG	3 cut(s)	169, 193, 205
Cac8I	GCNNGC	1 cut(s)	289
Csp6I	GTAC	1 cut(s)	265
CviAII	CATG	2 cut(s)	6, 160
CviJI	RGCY	3 cut(s)	142, 172, 225
CviKI_1	RGCY	3 cut(s)	142, 172, 225
CviQI	GTAC	1 cut(s)	265
DpnI	GATC	1 cut(s)	26
DpnII	GATC	1 cut(s)	24
DraIII	CACNNNGTG	1 cut(s)	33
Eco130I	CCWWGG	1 cut(s)	143
EcoT14I	CCWWGG	1 cut(s)	143
ErhI	CCWWGG	1 cut(s)	143
FaeI	CATG	2 cut(s)	9, 163
FaiI	YATR	6 cut(s)	7, 45, 122, 124, 161, 260
FatI	CATG	2 cut(s)	5, 159
FauI	CCCGC	1 cut(s)	280
FauNDI	CATATG	1 cut(s)	122
FblI	GTMKAC	1 cut(s)	238
FokI	GGATG	3 cut(s)	176, 180, 212
GsuI	CTGGAG	1 cut(s)	34
HaeIII	GGCC	1 cut(s)	142
HapII	CCGG	1 cut(s)	197
Hin1II	CATG	2 cut(s)	9, 163
HincII	GTYRAC	1 cut(s)	239
HindII	GTYRAC	1 cut(s)	239
HinfI	GANTC	1 cut(s)	235
HpaII	CCGG	1 cut(s)	197
Hpy166II	GTNNAC	1 cut(s)	239
Hpy188I	TCNGA	1 cut(s)	247
Hpy188III	TCNNGA	1 cut(s)	197
Hpy8I	GTNNAC	1 cut(s)	239
HpyAV	CCTTC	2 cut(s)	334, 339
HpyCH4IV	ACGT	1 cut(s)	32
HpyCH4V	TGCA	3 cut(s)	9, 310, 335
HpyF10VI	GCNNNNNNNGC	2 cut(s)	188, 288
HpySE526I	ACGT	1 cut(s)	32
Hsp92II	CATG	2 cut(s)	9, 163
Kpn2I	TCCGGA	1 cut(s)	196
Kzo9I	GATC	1 cut(s)	24
LpnPI	CCDG	6 cut(s)	118, 124, 210, 277, 296, 321
LweI	GCATC	1 cut(s)	154
MaeII	ACGT	1 cut(s)	32
MalI	GATC	1 cut(s)	26
MboI	GATC	1 cut(s)	24
MboII	GAAGA	2 cut(s)	369, 372
MluCI	AATT	2 cut(s)	93, 215
MlyI	GAGTC	1 cut(s)	244
MmeI	TCCRAC	1 cut(s)	186
MnlI	CCTC	7 cut(s)	47, 110, 116, 165, 205, 253, 255
MroI	TCCGGA	1 cut(s)	196
MseI	TTAA	1 cut(s)	385
MslI	CAYNNNNRTG	2 cut(s)	162, 198
MspI	CCGG	1 cut(s)	197
MwoI	GCNNNNNNNGC	2 cut(s)	188, 288
NdeI	CATATG	1 cut(s)	122
NdeII	GATC	1 cut(s)	24
NlaIII	CATG	2 cut(s)	9, 163
NlaIV	GGNNCC	1 cut(s)	149
NmeAIII	GCCGAG	1 cut(s)	148
NspI	RCATGY	1 cut(s)	9
PleI	GAGTC	1 cut(s)	243
PpsI	GAGTC	1 cut(s)	243
PspN4I	GGNNCC	1 cut(s)	149
RsaI	GTAC	1 cut(s)	266
RsaNI	GTAC	1 cut(s)	265
RseI	CAYNNNNRTG	2 cut(s)	162, 198
SalI	GTCGAC	1 cut(s)	237
SaqAI	TTAA	1 cut(s)	385
Sau3AI	GATC	1 cut(s)	24
SchI	GAGTC	1 cut(s)	244
SetI	ASST	5 cut(s)	35, 108, 157, 227, 266
SfaNI	GCATC	1 cut(s)	154
SmiMI	CAYNNNNRTG	2 cut(s)	162, 198
Sse9I	AATT	2 cut(s)	93, 215
SsiI	CCGC	1 cut(s)	287
SspI	AATATT	1 cut(s)	84
StyI	CCWWGG	1 cut(s)	143
TaiI	ACGT	1 cut(s)	35
TaqI	TCGA	1 cut(s)	238
TasI	AATT	2 cut(s)	93, 215
Tru1I	TTAA	1 cut(s)	385
Tru9I	TTAA	1 cut(s)	385
XapI	RAATTY	1 cut(s)	215
XceI	RCATGY	1 cut(s)	9
XmiI	GTMKAC	1 cut(s)	238

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.