Rmu_sc0005690.1_g000022

Multiple C2 and transmembrane domain-containing protein

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0005690.1
Physical Location & Seq
Reverse (-)
79226 .. 80239
1014 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0005690.1_g000022.1.cds

Sequence Viewer

Length: 1014 bp
atgcttgctgacgtcacagaggaaaagcaggatttccgtatagggaaaatacgaattcgcatctctacgctggagagcaacagggtgtacaagaactcgtacccgttgctggttttgtcccggaccgggttaaagaaaatgggagagatagagctggcggtccggttcgcctgcccgtccttgctacccgagacctgcgcggtttacgggcagccattgctgcccagaatgcactacctccgccctctcggggtggctcagcaggaggctttacgcggggcagccacacgcatggtggccgcgtggctcgcacgctccgaaccgccgctggggccggaggtggtgcggtacatgttggacgcggactcgcacacgtggagcatgaggaagagcaaagcgaattggtttcggatcgtggcggtgctggcgtggttggtcgggttagccaagtggttggatgatatacggaggtggaggaacccggtgacgacagttttggtgcacgtgttgtatttggttctggtttggtacccggatttgatagtcccaaccgggtttctatatgtgtttctgattggggtttggtactaccggttcaggcctaagataccagctggaatggacctccggctctctcaggccgatacagtcgacccggatgaacttgatgaggagttcgatacttttcctagctcaaaatctccagatgtgattcgagcccggtatgaccgattaagaatgctggcggcccgggtccaaacggttttgggcgactttgcggcccaaggagagcgggcccaggcccttgtgagctggagggacccacgtgctacaaagttgttcataggtgtatgcttgcttatcactgtggtgctgtatgctgtgccacccaaaatggttgcggtggcattgggtttttactacctgcgccacccgatgttcagagacccaatgccaccggcgagcctcaactttttccggaggcttccgagtctgtcggaccggttaatgtag

Protein Analysis

337

Amino Acids

38.67

Weight (kDa)

9.74

Isoelectric Point (pI)

47.17

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 15
Acc36I ACCTGC 2 cut(s) 203, 933
Acc65I GGTACC 1 cut(s) 528
AccB1I GGYRCC 1 cut(s) 528
AccBSI CCGCTC 1 cut(s) 793
AccI GTMKAC 1 cut(s) 651
AccII CGCG 4 cut(s) 200, 276, 302, 362
AccIII TCCGGA 1 cut(s) 978
AclWI GGATC 1 cut(s) 419
AcoI YGGCCR 1 cut(s) 297
AcsI RAATTY 1 cut(s) 54
AcvI CACGTG 3 cut(s) 375, 505, 827
AcyI GRCGYC 1 cut(s) 12
AfaI GTAC 5 cut(s) 89, 101, 350, 530, 587
AfiI CCNNNNNNNGG 4 cut(s) 109, 126, 250, 329
AflIII ACRYGT 3 cut(s) 351, 372, 504
AgeI ACCGGT 2 cut(s) 591, 1002
AjnI CCWGG 1 cut(s) 798
AleI CACNNNNGTG 1 cut(s) 869
AluBI AGCT 4 cut(s) 154, 614, 693, 813
AluI AGCT 4 cut(s) 154, 614, 693, 813
Alw21I GWGCWC 1 cut(s) 504
Alw26I GTCTC 2 cut(s) 185, 939
Alw44I GTGCAC 1 cut(s) 500
AlwI GGATC 1 cut(s) 419
Ama87I CYCGRG 3 cut(s) 188, 248, 750
Aor13HI TCCGGA 1 cut(s) 978
AoxI GGCC 8 cut(s) 297, 332, 599, 639, 747, 780, 795, 801
ApaI GGGCCC 1 cut(s) 799
ApaLI GTGCAC 1 cut(s) 500
ApeKI GCWGC 3 cut(s) 211, 220, 281
ApoI RAATTY 1 cut(s) 54
ArsI GACNNNNNNTTYG 2 cut(s) 478, 510
AsiGI ACCGGT 2 cut(s) 591, 1002
Asp718I GGTACC 1 cut(s) 528
AspLEI GCGC 2 cut(s) 200, 930
AsuC2I CCSGG 9 cut(s) 121, 127, 482, 533, 553, 656, 721, 751, 752
AsuHPI GGTGA 1 cut(s) 496
AvaI CYCGRG 3 cut(s) 188, 248, 750
AvaII GGWCC 6 cut(s) 123, 160, 622, 754, 820, 1000
BaeGI GKGCMC 2 cut(s) 504, 799
BanI GGYRCC 1 cut(s) 528
BanII GRGCYC 2 cut(s) 721, 799
BbrPI CACGTG 3 cut(s) 375, 505, 827
Bbv12I GWGCWC 1 cut(s) 504
BbvI GCAGC 3 cut(s) 207, 223, 293
BciT130I CCWGG 1 cut(s) 800
BcnI CCSGG 9 cut(s) 121, 127, 482, 533, 553, 656, 721, 751, 752
BcoDI GTCTC 2 cut(s) 185, 939
BfaI CTAG 1 cut(s) 690
BfuAI ACCTGC 2 cut(s) 203, 933
BglI GCCNNNNNGGC 1 cut(s) 331
BisI GCNGC 7 cut(s) 212, 221, 282, 300, 326, 747, 780
BlpI GCTNAGC 1 cut(s) 258
BlsI GCNGC 7 cut(s) 213, 222, 283, 301, 327, 748, 781
Bme18I GGWCC 6 cut(s) 123, 160, 622, 754, 820, 1000
BmeT110I CYCGRG 3 cut(s) 188, 248, 750
BmiI GGNNCC 7 cut(s) 333, 479, 530, 755, 797, 821, 822
BmsI GCATC 1 cut(s) 69
BpmI CTGGAG 3 cut(s) 92, 687, 835
Bpu1102I GCTNAGC 1 cut(s) 258
BpuMI CCSGG 9 cut(s) 121, 127, 482, 533, 553, 656, 721, 751, 752
BsaAI YACGTR 3 cut(s) 375, 505, 827
BsaHI GRCGYC 1 cut(s) 12
BsaI GGTCTC 2 cut(s) 185, 939
BsaJI CCNNGG 3 cut(s) 750, 784, 798
BsaWI WCCGGW 4 cut(s) 162, 591, 978, 1002
Bsc4I CCNNNNNNNGG 4 cut(s) 109, 126, 250, 329
Bse118I RCCGGY 3 cut(s) 591, 958, 1002
Bse3DI GCAATG 1 cut(s) 215
BseAI TCCGGA 1 cut(s) 978
BseBI CCWGG 1 cut(s) 800
BseDI CCNNGG 3 cut(s) 750, 784, 798
BseGI GGATG 2 cut(s) 463, 664
BseLI CCNNNNNNNGG 4 cut(s) 109, 126, 250, 329
BseMI GCAATG 1 cut(s) 215
BseMII CTCAG 2 cut(s) 272, 650
BseRI GAGGAG 1 cut(s) 686
BseSI GKGCMC 2 cut(s) 504, 799
BseXI GCAGC 3 cut(s) 207, 223, 293
BseYI CCCAGC 1 cut(s) 328
Bsh1236I CGCG 4 cut(s) 200, 276, 302, 362
BshFI GGCC 8 cut(s) 299, 334, 601, 641, 749, 782, 797, 803
BshNI GGYRCC 1 cut(s) 528
BshTI ACCGGT 2 cut(s) 591, 1002
BsiHKAI GWGCWC 1 cut(s) 504
BsiHKCI CYCGRG 3 cut(s) 188, 248, 750
BslFI GGGAC 3 cut(s) 103, 530, 833
BslI CCNNNNNNNGG 4 cut(s) 109, 126, 250, 329
BsmAI GTCTC 2 cut(s) 185, 939
BsmFI GGGAC 3 cut(s) 103, 530, 833
BsmI GAATGC 2 cut(s) 234, 744
BsnI GGCC 8 cut(s) 299, 334, 601, 641, 749, 782, 797, 803
Bso31I GGTCTC 2 cut(s) 185, 939
BsoBI CYCGRG 3 cut(s) 188, 248, 750
Bsp120I GGGCCC 1 cut(s) 795
Bsp1286I GDGCHC 3 cut(s) 504, 721, 799
Bsp13I TCCGGA 1 cut(s) 978
Bsp1407I TGTACA 1 cut(s) 87
Bsp143I GATC 1 cut(s) 411
Bsp1720I GCTNAGC 1 cut(s) 258
BspANI GGCC 8 cut(s) 299, 334, 601, 641, 749, 782, 797, 803
BspCNI CTCAG 2 cut(s) 271, 649
BspEI TCCGGA 1 cut(s) 978
BspFNI CGCG 4 cut(s) 200, 276, 302, 362
BspLI GGNNCC 7 cut(s) 333, 479, 530, 755, 797, 821, 822
BspMI ACCTGC 2 cut(s) 203, 933
BspPI GGATC 1 cut(s) 419
BspQI GCTCTTC 1 cut(s) 383
BspT107I GGYRCC 1 cut(s) 528
BspTNI GGTCTC 2 cut(s) 185, 939
BsrBI CCGCTC 1 cut(s) 793
BsrDI GCAATG 1 cut(s) 215
BsrFI RCCGGY 3 cut(s) 591, 958, 1002
BsrGI TGTACA 1 cut(s) 87
BssAI RCCGGY 3 cut(s) 591, 958, 1002
BssECI CCNNGG 3 cut(s) 750, 784, 798
BssMI GATC 1 cut(s) 411
BssNI GRCGYC 1 cut(s) 12
BssT1I CCWWGG 1 cut(s) 784
Bst2UI CCWGG 1 cut(s) 800
Bst4CI ACNGT 4 cut(s) 493, 649, 763, 868
Bst6I CTCTTC 1 cut(s) 383
BstACI GRCGYC 1 cut(s) 12
BstAPI GCANNNNNTGC 1 cut(s) 217
BstAUI TGTACA 1 cut(s) 87
BstBAI YACGTR 3 cut(s) 375, 505, 827
BstDEI CTNAG 3 cut(s) 258, 603, 636
BstF5I GGATG 2 cut(s) 463, 664
BstFNI CGCG 4 cut(s) 200, 276, 302, 362
BstHHI GCGC 2 cut(s) 200, 930
BstKTI GATC 1 cut(s) 414
BstMAI GTCTC 2 cut(s) 185, 939
BstMBI GATC 1 cut(s) 411
BstMWI GCNNNNNNNGC 6 cut(s) 217, 220, 229, 308, 331, 425
BstNI CCWGG 1 cut(s) 800
BstNSI RCATGY 1 cut(s) 355
BstSLI GKGCMC 2 cut(s) 504, 799
BstUI CGCG 4 cut(s) 200, 276, 302, 362
BstV1I GCAGC 3 cut(s) 207, 223, 293
BstXI CCANNNNNNTGG 2 cut(s) 292, 454
BsuRI GGCC 8 cut(s) 299, 334, 601, 641, 749, 782, 797, 803
BtsCI GGATG 2 cut(s) 463, 664
BtsIMutI CAGTG 1 cut(s) 864
BveI ACCTGC 2 cut(s) 203, 933
CfoI GCGC 2 cut(s) 200, 930
Cfr10I RCCGGY 3 cut(s) 591, 958, 1002
Cfr9I CCCGGG 1 cut(s) 750
CpoI CGGWCCG 3 cut(s) 123, 160, 1000
CseI GACGC 1 cut(s) 368
Csp6I GTAC 5 cut(s) 88, 100, 349, 529, 586
CspAI ACCGGT 2 cut(s) 591, 1002
CspI CGGWCCG 3 cut(s) 123, 160, 1000
CviAII CATG 3 cut(s) 292, 352, 382
CviQI GTAC 5 cut(s) 88, 100, 349, 529, 586
DdeI CTNAG 3 cut(s) 258, 603, 636
DpnI GATC 1 cut(s) 413
DpnII GATC 1 cut(s) 411
EaeI YGGCCR 1 cut(s) 297
Eam1104I CTCTTC 1 cut(s) 383
EarI CTCTTC 1 cut(s) 383
EciI GGCGGA 1 cut(s) 230
Eco130I CCWWGG 1 cut(s) 784
Eco147I AGGCCT 1 cut(s) 601
Eco24I GRGCYC 2 cut(s) 721, 799
Eco31I GGTCTC 2 cut(s) 185, 939
Eco47I GGWCC 6 cut(s) 123, 160, 622, 754, 820, 1000
Eco72I CACGTG 3 cut(s) 375, 505, 827
Eco88I CYCGRG 3 cut(s) 188, 248, 750
EcoO109I RGGNCCY 2 cut(s) 802, 820
EcoRI GAATTC 1 cut(s) 54
EcoRII CCWGG 1 cut(s) 798
EcoT14I CCWWGG 1 cut(s) 784
EcoT38I GRGCYC 2 cut(s) 721, 799
ErhI CCWWGG 1 cut(s) 784
FaeI CATG 3 cut(s) 295, 355, 385
FaqI GGGAC 3 cut(s) 103, 530, 833
FatI CATG 3 cut(s) 291, 351, 381
FauI CCCGC 2 cut(s) 269, 786
FblI GTMKAC 1 cut(s) 651
Fnu4HI GCNGC 7 cut(s) 212, 221, 282, 300, 326, 747, 780
FokI GGATG 2 cut(s) 470, 671
FriOI GRGCYC 2 cut(s) 721, 799
Fsp4HI GCNGC 7 cut(s) 212, 221, 282, 300, 326, 747, 780
FspBI CTAG 1 cut(s) 690
GlaI GCGC 2 cut(s) 199, 929
GluI GCNGC 7 cut(s) 212, 221, 282, 300, 326, 747, 780
GsaI CCCAGC 1 cut(s) 332
GsuI CTGGAG 3 cut(s) 92, 687, 835
HaeIII GGCC 8 cut(s) 299, 334, 601, 641, 749, 782, 797, 803
HgaI GACGC 1 cut(s) 368
HhaI GCGC 2 cut(s) 200, 930
Hin1I GRCGYC 1 cut(s) 12
Hin1II CATG 3 cut(s) 295, 355, 385
Hin6I GCGC 2 cut(s) 198, 928
HinP1I GCGC 2 cut(s) 198, 928
HincII GTYRAC 1 cut(s) 652
HindII GTYRAC 1 cut(s) 652
HinfI GANTC 3 cut(s) 365, 712, 991
HphI GGTGA 1 cut(s) 496
Hpy166II GTNNAC 4 cut(s) 88, 205, 502, 652
Hpy188I TCNGA 6 cut(s) 319, 411, 573, 944, 990, 1000
Hpy188III TCNNGA 2 cut(s) 704, 979
Hpy8I GTNNAC 4 cut(s) 88, 205, 502, 652
HpyCH4III ACNGT 4 cut(s) 493, 649, 763, 868
HpyCH4IV ACGT 4 cut(s) 12, 374, 504, 826
HpyCH4V TGCA 2 cut(s) 232, 502
HpyF10VI GCNNNNNNNGC 6 cut(s) 217, 220, 229, 308, 331, 425
HpyF3I CTNAG 3 cut(s) 258, 603, 636
HpySE526I ACGT 4 cut(s) 12, 374, 504, 826
Hsp92I GRCGYC 1 cut(s) 12
Hsp92II CATG 3 cut(s) 295, 355, 385
HspAI GCGC 2 cut(s) 198, 928
KflI GGGWCCC 1 cut(s) 820
Kpn2I TCCGGA 1 cut(s) 978
KpnI GGTACC 1 cut(s) 532
Kzo9I GATC 1 cut(s) 411
LguI GCTCTTC 1 cut(s) 383
LmnI GCTCC 2 cut(s) 320, 378
Lsp1109I GCAGC 3 cut(s) 207, 223, 293
LweI GCATC 1 cut(s) 69
MaeI CTAG 1 cut(s) 690
MaeII ACGT 4 cut(s) 12, 374, 504, 826
MaeIII GTNAC 2 cut(s) 13, 484
MalI GATC 1 cut(s) 413
MbiI CCGCTC 1 cut(s) 793
MboI GATC 1 cut(s) 411
MboII GAAGA 1 cut(s) 400
MhlI GDGCHC 3 cut(s) 504, 721, 799
MluCI AATT 2 cut(s) 54, 400
MlyI GAGTC 2 cut(s) 359, 1000
MmeI TCCRAC 3 cut(s) 336, 435, 978
MroI TCCGGA 1 cut(s) 978
MseI TTAA 3 cut(s) 131, 734, 1007
MslI CAYNNNNRTG 2 cut(s) 290, 869
MspA1I CMGCKG 2 cut(s) 328, 614
Mva1269I GAATGC 2 cut(s) 234, 744
MvaI CCWGG 1 cut(s) 800
MvnI CGCG 4 cut(s) 200, 276, 302, 362
MwoI GCNNNNNNNGC 6 cut(s) 217, 220, 229, 308, 331, 425
NciI CCSGG 9 cut(s) 121, 127, 482, 533, 553, 656, 721, 751, 752
NdeII GATC 1 cut(s) 411
NlaIII CATG 3 cut(s) 295, 355, 385
NlaIV GGNNCC 7 cut(s) 333, 479, 530, 755, 797, 821, 822
NmuCI GTSAC 2 cut(s) 13, 484
NspI RCATGY 1 cut(s) 355
OliI CACNNNNGTG 1 cut(s) 869
PceI AGGCCT 1 cut(s) 601
PciI ACATGT 1 cut(s) 351
PciSI GCTCTTC 1 cut(s) 383
PcsI WCGNNNNNNNCGW 1 cut(s) 315
PctI GAATGC 2 cut(s) 234, 744
PfeI GAWTC 1 cut(s) 712
PfoI TCCNGGA 1 cut(s) 119
PinAI ACCGGT 2 cut(s) 591, 1002
PkrI GCNGC 7 cut(s) 213, 222, 283, 301, 327, 748, 781
PleI GAGTC 2 cut(s) 359, 999
PmaCI CACGTG 3 cut(s) 375, 505, 827
PmlI CACGTG 3 cut(s) 375, 505, 827
PpsI GAGTC 2 cut(s) 359, 999
Ppu21I YACGTR 3 cut(s) 375, 505, 827
PpuMI RGGWCCY 1 cut(s) 820
PscI ACATGT 1 cut(s) 351
Psp5II RGGWCCY 1 cut(s) 820
Psp6I CCWGG 1 cut(s) 798
PspCI CACGTG 3 cut(s) 375, 505, 827
PspFI CCCAGC 1 cut(s) 328
PspGI CCWGG 1 cut(s) 798
PspN4I GGNNCC 7 cut(s) 333, 479, 530, 755, 797, 821, 822
PspOMI GGGCCC 1 cut(s) 795
PspPPI RGGWCCY 1 cut(s) 820
PsrI GAACNNNNNNTAC 2 cut(s) 578, 610
PvuII CAGCTG 1 cut(s) 614
RsaI GTAC 5 cut(s) 89, 101, 350, 530, 587
RsaNI GTAC 5 cut(s) 88, 100, 349, 529, 586
RseI CAYNNNNRTG 2 cut(s) 290, 869
Rsr2I CGGWCCG 3 cut(s) 123, 160, 1000
RsrII CGGWCCG 3 cut(s) 123, 160, 1000
SalI GTCGAC 1 cut(s) 650
SapI GCTCTTC 1 cut(s) 383
SaqAI TTAA 3 cut(s) 131, 734, 1007
SatI GCNGC 7 cut(s) 212, 221, 282, 300, 326, 747, 780
Sau3AI GATC 1 cut(s) 411
SchI GAGTC 2 cut(s) 359, 1000
SduI GDGCHC 3 cut(s) 504, 721, 799
SfaNI GCATC 1 cut(s) 69
SgrAI CRCCGGYG 1 cut(s) 958
SinI GGWCC 6 cut(s) 123, 160, 622, 754, 820, 1000
SmaI CCCGGG 1 cut(s) 752
SmiMI CAYNNNNRTG 2 cut(s) 290, 869
Sse9I AATT 2 cut(s) 54, 400
SseBI AGGCCT 1 cut(s) 601
SspMI CTAG 1 cut(s) 690
StuI AGGCCT 1 cut(s) 601
StyI CCWWGG 1 cut(s) 784
TaaI ACNGT 4 cut(s) 493, 649, 763, 868
TaiI ACGT 4 cut(s) 15, 377, 507, 829
TaqI TCGA 3 cut(s) 651, 678, 715
TaqII GACCGA 1 cut(s) 744
TasI AATT 2 cut(s) 54, 400
TatI WGTACW 1 cut(s) 87
TauI GCSGC 4 cut(s) 302, 328, 749, 782
TfiI GAWTC 1 cut(s) 712
Tru1I TTAA 3 cut(s) 131, 734, 1007
Tru9I TTAA 3 cut(s) 131, 734, 1007
TscAI CASTG 1 cut(s) 871
TseFI GTSAC 2 cut(s) 13, 484
TseI GCWGC 3 cut(s) 211, 220, 281
Tsp45I GTSAC 2 cut(s) 13, 484
TspDTI ATGAA 2 cut(s) 675, 832
TspGWI ACGGA 2 cut(s) 26, 481
TspMI CCCGGG 1 cut(s) 750
TspRI CASTG 1 cut(s) 871
VneI GTGCAC 1 cut(s) 500
VpaK11BI GGWCC 6 cut(s) 123, 160, 622, 754, 820, 1000
XapI RAATTY 1 cut(s) 54
XceI RCATGY 1 cut(s) 355
XcmI CCANNNNNNNNNTGG 1 cut(s) 292
XmaI CCCGGG 1 cut(s) 750
XmiI GTMKAC 1 cut(s) 651
XspI CTAG 1 cut(s) 690
ZraI GACGTC 1 cut(s) 13
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.