Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0010274.1

Orthogroup ID

OG0007532

Physical Location & Seq

Genomic Coordinates Forward (+)

26312 .. 26722

Gene Structure 411 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0010274.1_g000012.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 282 bp

atggtagccgcatggctcgtacactctaagccgctgctagggccggaggtagtgcggtacatgttggatgctgactcgcacatgtggagcatgaggaagaccaaagcgaattggtttcggatagtggaaatgctagcatggttggtcgggttagcgaagtggttggatgatatacggaggcctaagatactggctggaatggacttctggctcccccaggcggatacggtcgacccggatgaacttgatgaggagttcgacactttctcggagctgccgtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005509 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005783 GO:0005829 GO:0005886 GO:0005911 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0009506 GO:0009987 GO:0012505 GO:0016020 GO:0016021 GO:0019722 GO:0019932 GO:0023052 GO:0030054 GO:0031224 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0035556 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044425 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0046872 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055044 GO:0065007 GO:0070013 GO:0071944 GO:0099402

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

C2 PRT_C

Protein Analysis

93

Amino Acids

10.9

Weight (kDa)

4.69

Isoelectric Point (pI)

34.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007532)

Species	Orthologous Gene IDs
malus_domestica	MD03G1049300.v1.1
rosa_chinensis	RchiOBHm_Chr2g0107641 RchiOBHm_Chr2g0171191 RchiOBHm_Chr7g0217211
rosa_laevigata	RLG00000016544 RLG00000018440 RLG00000018516
rosa_multiflora	Rmu_sc0000070.1_g000056 Rmu_sc0000147.1_g000002 Rmu_sc0001149.1_g000002 Rmu_sc0001513.1_g000002 Rmu_sc0004372.1_g000001 Rmu_sc0005690.1_g000022 Rmu_sc0007586.1_g000003 Rmu_sc0007734.1_g000006 Rmu_sc0010274.1_g000012
rosa_roxburghii	Rroxscaffold_3G00257030
rosa_samantha	Rh2BG208200 Rh2CG200900 Rh2CG606400 Rh2DG654500 Rh2DG654600 Rh7AG279600 Rh7AG306200 Rh7CG325300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	231
AciI	CCGC	4 cut(s)	9, 32, 55, 221
AfaI	GTAC	2 cut(s)	21, 59
AfiI	CCNNNNNNNGG	2 cut(s)	38, 220
AflIII	ACRYGT	2 cut(s)	60, 81
AjnI	CCWGG	1 cut(s)	216
AluBI	AGCT	1 cut(s)	274
AluI	AGCT	1 cut(s)	274
AoxI	GGCC	2 cut(s)	41, 179
ApeKI	GCWGC	2 cut(s)	34, 274
AspS9I	GGNCC	1 cut(s)	41
AsuC2I	CCSGG	1 cut(s)	236
AsuNHI	GCTAGC	1 cut(s)	133
BbsI	GAAGAC	1 cut(s)	104
BbvI	GCAGC	2 cut(s)	21, 261
BceAI	ACGGC	1 cut(s)	262
BciT130I	CCWGG	1 cut(s)	218
BciVI	GTATCC	1 cut(s)	217
BcnI	CCSGG	1 cut(s)	236
BfaI	CTAG	2 cut(s)	38, 134
BfuI	GTATCC	1 cut(s)	217
BisI	GCNGC	4 cut(s)	9, 32, 35, 275
BlsI	GCNGC	4 cut(s)	10, 33, 36, 276
Bme1390I	CCNGG	2 cut(s)	218, 236
BmgT120I	GGNCC	1 cut(s)	41
BmiI	GGNNCC	1 cut(s)	212
BmrFI	CCNGG	2 cut(s)	218, 236
BmsI	GCATC	1 cut(s)	58
BmtI	GCTAGC	1 cut(s)	137
BpiI	GAAGAC	1 cut(s)	104
BpuMI	CCSGG	1 cut(s)	236
BsaJI	CCNNGG	1 cut(s)	216
BsaXI	ACNNNNNCTCC	1 cut(s)	263
Bsc4I	CCNNNNNNNGG	2 cut(s)	38, 220
Bse1I	ACTGG	1 cut(s)	195
BseBI	CCWGG	1 cut(s)	218
BseDI	CCNNGG	1 cut(s)	216
BseGI	GGATG	3 cut(s)	73, 172, 244
BseLI	CCNNNNNNNGG	2 cut(s)	38, 220
BseNI	ACTGG	1 cut(s)	195
BseRI	GAGGAG	1 cut(s)	266
BseXI	GCAGC	2 cut(s)	21, 261
Bsh1285I	CGRYCG	1 cut(s)	231
BshFI	GGCC	2 cut(s)	43, 181
BsiEI	CGRYCG	1 cut(s)	231
BsiSI	CCGG	2 cut(s)	44, 236
BslI	CCNNNNNNNGG	2 cut(s)	38, 220
BsnI	GGCC	2 cut(s)	43, 181
BspACI	CCGC	4 cut(s)	9, 32, 55, 221
BspANI	GGCC	2 cut(s)	43, 181
BspLI	GGNNCC	1 cut(s)	212
BspOI	GCTAGC	1 cut(s)	137
BsrI	ACTGG	1 cut(s)	195
BssECI	CCNNGG	1 cut(s)	216
Bst2UI	CCWGG	1 cut(s)	218
Bst4CI	ACNGT	1 cut(s)	229
BstC8I	GCNNGC	1 cut(s)	135
BstDEI	CTNAG	2 cut(s)	27, 183
BstF5I	GGATG	3 cut(s)	73, 172, 244
BstMCI	CGRYCG	1 cut(s)	231
BstMWI	GCNNNNNNNGC	1 cut(s)	40
BstNI	CCWGG	1 cut(s)	218
BstNSI	RCATGY	2 cut(s)	64, 85
BstSCI	CCNGG	2 cut(s)	216, 234
BstV1I	GCAGC	2 cut(s)	21, 261
BstV2I	GAAGAC	1 cut(s)	104
BsuI	GTATCC	1 cut(s)	217
BsuRI	GGCC	2 cut(s)	43, 181
BtsCI	GGATG	3 cut(s)	73, 172, 244
Cac8I	GCNNGC	1 cut(s)	135
Cfr13I	GGNCC	1 cut(s)	41
Csp6I	GTAC	2 cut(s)	20, 58
CviAII	CATG	5 cut(s)	12, 61, 82, 91, 138
CviJI	RGCY	8 cut(s)	8, 16, 31, 43, 181, 194, 211, 274
CviKI_1	RGCY	8 cut(s)	8, 16, 31, 43, 181, 194, 211, 274
CviQI	GTAC	2 cut(s)	20, 58
DdeI	CTNAG	2 cut(s)	27, 183
EciI	GGCGGA	1 cut(s)	236
Eco147I	AGGCCT	1 cut(s)	181
EcoRII	CCWGG	1 cut(s)	216
FaeI	CATG	5 cut(s)	15, 64, 85, 94, 141
FaiI	YATR	6 cut(s)	13, 62, 83, 92, 139, 173
FatI	CATG	5 cut(s)	11, 60, 81, 90, 137
FblI	GTMKAC	1 cut(s)	231
Fnu4HI	GCNGC	4 cut(s)	9, 32, 35, 275
FokI	GGATG	3 cut(s)	80, 179, 251
Fsp4HI	GCNGC	4 cut(s)	9, 32, 35, 275
FspBI	CTAG	2 cut(s)	38, 134
GluI	GCNGC	4 cut(s)	9, 32, 35, 275
HaeIII	GGCC	2 cut(s)	43, 181
HapII	CCGG	2 cut(s)	44, 236
Hin1II	CATG	5 cut(s)	15, 64, 85, 94, 141
HincII	GTYRAC	1 cut(s)	232
HindII	GTYRAC	1 cut(s)	232
HinfI	GANTC	1 cut(s)	74
HpaII	CCGG	2 cut(s)	44, 236
Hpy166II	GTNNAC	2 cut(s)	22, 232
Hpy188I	TCNGA	2 cut(s)	120, 271
Hpy8I	GTNNAC	2 cut(s)	22, 232
HpyCH4III	ACNGT	1 cut(s)	229
HpyF10VI	GCNNNNNNNGC	1 cut(s)	40
HpyF3I	CTNAG	2 cut(s)	27, 183
Hsp92II	CATG	5 cut(s)	15, 64, 85, 94, 141
LmnI	GCTCC	3 cut(s)	87, 216, 271
LpnPI	CCDG	7 cut(s)	57, 176, 180, 193, 203, 230, 249
Lsp1109I	GCAGC	2 cut(s)	21, 261
LweI	GCATC	1 cut(s)	58
MaeI	CTAG	2 cut(s)	38, 134
MboII	GAAGA	1 cut(s)	109
MluCI	AATT	1 cut(s)	109
MlyI	GAGTC	1 cut(s)	68
MmeI	TCCRAC	2 cut(s)	45, 144
MnlI	CCTC	4 cut(s)	40, 87, 171, 244
MspA1I	CMGCKG	1 cut(s)	34
MspI	CCGG	2 cut(s)	44, 236
MspR9I	CCNGG	2 cut(s)	218, 236
MvaI	CCWGG	1 cut(s)	218
MwoI	GCNNNNNNNGC	1 cut(s)	40
NciI	CCSGG	1 cut(s)	236
NheI	GCTAGC	1 cut(s)	133
NlaIII	CATG	5 cut(s)	15, 64, 85, 94, 141
NlaIV	GGNNCC	1 cut(s)	212
NspI	RCATGY	2 cut(s)	64, 85
PceI	AGGCCT	1 cut(s)	181
PciI	ACATGT	2 cut(s)	60, 81
PcsI	WCGNNNNNNNCGW	1 cut(s)	275
PkrI	GCNGC	4 cut(s)	10, 33, 36, 276
PleI	GAGTC	1 cut(s)	68
PpsI	GAGTC	1 cut(s)	68
PscI	ACATGT	2 cut(s)	60, 81
Psp6I	CCWGG	1 cut(s)	216
PspGI	CCWGG	1 cut(s)	216
PspN4I	GGNNCC	1 cut(s)	212
PspPI	GGNCC	1 cut(s)	41
RsaI	GTAC	2 cut(s)	21, 59
RsaNI	GTAC	2 cut(s)	20, 58
SalI	GTCGAC	1 cut(s)	230
SatI	GCNGC	4 cut(s)	9, 32, 35, 275
Sau96I	GGNCC	1 cut(s)	41
SchI	GAGTC	1 cut(s)	68
ScrFI	CCNGG	2 cut(s)	218, 236
SetI	ASST	2 cut(s)	51, 276
SfaNI	GCATC	1 cut(s)	58
Sse9I	AATT	1 cut(s)	109
SseBI	AGGCCT	1 cut(s)	181
SsiI	CCGC	4 cut(s)	9, 32, 55, 221
SspMI	CTAG	2 cut(s)	38, 134
StuI	AGGCCT	1 cut(s)	181
StyD4I	CCNGG	2 cut(s)	216, 234
TaaI	ACNGT	1 cut(s)	229
TaqI	TCGA	2 cut(s)	231, 258
TasI	AATT	1 cut(s)	109
TauI	GCSGC	2 cut(s)	11, 34
TseI	GCWGC	2 cut(s)	34, 274
TspDTI	ATGAA	1 cut(s)	255
TspGWI	ACGGA	1 cut(s)	190
XceI	RCATGY	2 cut(s)	64, 85
XmiI	GTMKAC	1 cut(s)	231
XspI	CTAG	2 cut(s)	38, 134

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.