Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0007532

Physical Location & Seq

Genomic Coordinates Reverse (-)

34246316 .. 34246663

Gene Structure 348 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG306200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 348 bp

ATGGTGGTAGCATGGCTAGCACAGTCCGAGCCGCCGCTAGGGCCGGAGGTGGTACAGTACATGTTGGATGTTGACTCACACACGTGGAGCATGAGGAAGAGCAAAGCGAATTGGTTTCAGATAGTGGCGATGCTGGCGTGGTTGGTCGGGTTAGCGAAGTGGTTGGATGATATACAGAGGTGGAGGAACTCGGTGAGGACGGTTTTGGTGCACATGTTGTATTTGGTTCTGGTTTGGTACCCGGATTTGCTAATCCCGACTGGGTTTCTGTATGTGTTTCTGATTGGGGTTTGGTACTACAGATTCAGGCCCAAGATACCGGCTGGAATGGACGTCTGGCTCTCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005509 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005783 GO:0005829 GO:0005886 GO:0005911 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0009506 GO:0009987 GO:0012505 GO:0016020 GO:0016021 GO:0019722 GO:0019932 GO:0023052 GO:0030054 GO:0031224 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0035556 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044425 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0046872 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055044 GO:0065007 GO:0070013 GO:0071944 GO:0099402

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

C2 PRT_C

Protein Analysis

115

Amino Acids

13.61

Weight (kDa)

9.05

Isoelectric Point (pI)

30.54

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007532)

Species	Orthologous Gene IDs
malus_domestica	MD03G1049300.v1.1
rosa_chinensis	RchiOBHm_Chr2g0107641 RchiOBHm_Chr2g0171191 RchiOBHm_Chr7g0217211
rosa_laevigata	RLG00000016544 RLG00000018440 RLG00000018516
rosa_multiflora	Rmu_sc0000070.1_g000056 Rmu_sc0000147.1_g000002 Rmu_sc0001149.1_g000002 Rmu_sc0001513.1_g000002 Rmu_sc0004372.1_g000001 Rmu_sc0005690.1_g000022 Rmu_sc0007586.1_g000003 Rmu_sc0007734.1_g000006 Rmu_sc0010274.1_g000012
rosa_roxburghii	Rroxscaffold_3G00257030
rosa_samantha	Rh2BG208200 Rh2CG200900 Rh2CG606400 Rh2DG654500 Rh2DG654600 Rh7AG279600 Rh7AG306200 Rh7CG325300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	336
Acc65I	GGTACC	1 cut(s)	237
AccB1I	GGYRCC	1 cut(s)	237
AciI	CCGC	2 cut(s)	32, 35
AcvI	CACGTG	1 cut(s)	84
AcyI	GRCGYC	1 cut(s)	333
AfaI	GTAC	4 cut(s)	54, 59, 239, 296
AfiI	CCNNNNNNNGG	1 cut(s)	38
AflIII	ACRYGT	3 cut(s)	60, 81, 213
AleI	CACNNNNGTG	1 cut(s)	82
Alw21I	GWGCWC	1 cut(s)	213
Alw44I	GTGCAC	1 cut(s)	209
AoxI	GGCC	2 cut(s)	41, 308
ApaLI	GTGCAC	1 cut(s)	209
Asp718I	GGTACC	1 cut(s)	237
AspS9I	GGNCC	2 cut(s)	41, 309
AsuC2I	CCSGG	1 cut(s)	242
AsuHPI	GGTGA	1 cut(s)	205
AsuNHI	GCTAGC	1 cut(s)	16
BaeGI	GKGCMC	1 cut(s)	213
BanI	GGYRCC	1 cut(s)	237
BbrPI	CACGTG	1 cut(s)	84
Bbv12I	GWGCWC	1 cut(s)	213
BcnI	CCSGG	1 cut(s)	242
BfaI	CTAG	3 cut(s)	17, 38, 346
BfmI	CTRYAG	1 cut(s)	298
BglI	GCCNNNNNGGC	1 cut(s)	40
BisI	GCNGC	2 cut(s)	32, 35
BlsI	GCNGC	2 cut(s)	33, 36
Bme1390I	CCNGG	1 cut(s)	242
BmgT120I	GGNCC	2 cut(s)	41, 309
BmiI	GGNNCC	1 cut(s)	239
BmrFI	CCNGG	1 cut(s)	242
BmrI	ACTGGG	1 cut(s)	270
BmsI	GCATC	1 cut(s)	120
BmtI	GCTAGC	1 cut(s)	20
BmuI	ACTGGG	1 cut(s)	270
BpuMI	CCSGG	1 cut(s)	242
BsaAI	YACGTR	1 cut(s)	84
BsaHI	GRCGYC	1 cut(s)	333
Bsc4I	CCNNNNNNNGG	1 cut(s)	38
Bse118I	RCCGGY	1 cut(s)	319
Bse1I	ACTGG	1 cut(s)	265
BseGI	GGATG	2 cut(s)	73, 172
BseLI	CCNNNNNNNGG	1 cut(s)	38
BseNI	ACTGG	1 cut(s)	265
BseSI	GKGCMC	1 cut(s)	213
BshFI	GGCC	2 cut(s)	43, 310
BshNI	GGYRCC	1 cut(s)	237
BsiHKAI	GWGCWC	1 cut(s)	213
BsiSI	CCGG	3 cut(s)	44, 242, 320
BslI	CCNNNNNNNGG	1 cut(s)	38
BsnI	GGCC	2 cut(s)	43, 310
Bsp1286I	GDGCHC	1 cut(s)	213
BspACI	CCGC	2 cut(s)	32, 35
BspANI	GGCC	2 cut(s)	43, 310
BspLI	GGNNCC	1 cut(s)	239
BspOI	GCTAGC	1 cut(s)	20
BspQI	GCTCTTC	1 cut(s)	92
BspT107I	GGYRCC	1 cut(s)	237
BsrFI	RCCGGY	1 cut(s)	319
BsrI	ACTGG	1 cut(s)	265
BssAI	RCCGGY	1 cut(s)	319
BssNI	GRCGYC	1 cut(s)	333
Bst4CI	ACNGT	3 cut(s)	24, 57, 202
Bst6I	CTCTTC	1 cut(s)	92
BstACI	GRCGYC	1 cut(s)	333
BstBAI	YACGTR	1 cut(s)	84
BstC8I	GCNNGC	2 cut(s)	18, 135
BstF5I	GGATG	2 cut(s)	73, 172
BstMWI	GCNNNNNNNGC	3 cut(s)	17, 40, 134
BstNSI	RCATGY	2 cut(s)	64, 217
BstSCI	CCNGG	1 cut(s)	240
BstSFI	CTRYAG	1 cut(s)	298
BstSLI	GKGCMC	1 cut(s)	213
BsuRI	GGCC	2 cut(s)	43, 310
BtgZI	GCGATG	1 cut(s)	143
BtsCI	GGATG	2 cut(s)	73, 172
Cac8I	GCNNGC	2 cut(s)	18, 135
Cfr10I	RCCGGY	1 cut(s)	319
Cfr13I	GGNCC	2 cut(s)	41, 309
Csp6I	GTAC	4 cut(s)	53, 58, 238, 295
CviAII	CATG	4 cut(s)	12, 61, 91, 214
CviJI	RGCY	6 cut(s)	16, 31, 43, 310, 323, 340
CviKI_1	RGCY	6 cut(s)	16, 31, 43, 310, 323, 340
CviQI	GTAC	4 cut(s)	53, 58, 238, 295
Eam1104I	CTCTTC	1 cut(s)	92
EarI	CTCTTC	1 cut(s)	92
Eco72I	CACGTG	1 cut(s)	84
FaeI	CATG	4 cut(s)	15, 64, 94, 217
FaiI	YATR	6 cut(s)	13, 62, 92, 173, 215, 273
FatI	CATG	4 cut(s)	11, 60, 90, 213
Fnu4HI	GCNGC	2 cut(s)	32, 35
FokI	GGATG	2 cut(s)	80, 179
Fsp4HI	GCNGC	2 cut(s)	32, 35
FspBI	CTAG	3 cut(s)	17, 38, 346
GluI	GCNGC	2 cut(s)	32, 35
HaeIII	GGCC	2 cut(s)	43, 310
HapII	CCGG	3 cut(s)	44, 242, 320
Hin1I	GRCGYC	1 cut(s)	333
Hin1II	CATG	4 cut(s)	15, 64, 94, 217
HincII	GTYRAC	1 cut(s)	73
HindII	GTYRAC	1 cut(s)	73
HinfI	GANTC	2 cut(s)	74, 303
HpaII	CCGG	3 cut(s)	44, 242, 320
HphI	GGTGA	1 cut(s)	205
Hpy166II	GTNNAC	2 cut(s)	73, 211
Hpy188I	TCNGA	3 cut(s)	28, 120, 282
Hpy188III	TCNNGA	1 cut(s)	256
Hpy8I	GTNNAC	2 cut(s)	73, 211
HpyCH4III	ACNGT	3 cut(s)	24, 57, 202
HpyCH4IV	ACGT	2 cut(s)	83, 333
HpyCH4V	TGCA	1 cut(s)	211
HpyF10VI	GCNNNNNNNGC	3 cut(s)	17, 40, 134
HpySE526I	ACGT	2 cut(s)	83, 333
Hsp92I	GRCGYC	1 cut(s)	333
Hsp92II	CATG	4 cut(s)	15, 64, 94, 217
KpnI	GGTACC	1 cut(s)	241
LguI	GCTCTTC	1 cut(s)	92
LmnI	GCTCC	1 cut(s)	87
LpnPI	CCDG	9 cut(s)	57, 119, 215, 246, 255, 292, 309, 322, 333
LweI	GCATC	1 cut(s)	120
MaeI	CTAG	3 cut(s)	17, 38, 346
MaeII	ACGT	2 cut(s)	83, 333
MboII	GAAGA	1 cut(s)	109
MhlI	GDGCHC	1 cut(s)	213
MluCI	AATT	1 cut(s)	109
MlyI	GAGTC	1 cut(s)	68
MmeI	TCCRAC	2 cut(s)	45, 144
MnlI	CCTC	5 cut(s)	40, 87, 171, 177, 189
MslI	CAYNNNNRTG	1 cut(s)	82
MspI	CCGG	3 cut(s)	44, 242, 320
MspR9I	CCNGG	1 cut(s)	242
MwoI	GCNNNNNNNGC	3 cut(s)	17, 40, 134
NciI	CCSGG	1 cut(s)	242
NheI	GCTAGC	1 cut(s)	16
NlaIII	CATG	4 cut(s)	15, 64, 94, 217
NlaIV	GGNNCC	1 cut(s)	239
NspI	RCATGY	2 cut(s)	64, 217
OliI	CACNNNNGTG	1 cut(s)	82
PciI	ACATGT	2 cut(s)	60, 213
PciSI	GCTCTTC	1 cut(s)	92
PfeI	GAWTC	1 cut(s)	303
PkrI	GCNGC	2 cut(s)	33, 36
PleI	GAGTC	1 cut(s)	68
PmaCI	CACGTG	1 cut(s)	84
PmlI	CACGTG	1 cut(s)	84
PpsI	GAGTC	1 cut(s)	68
Ppu21I	YACGTR	1 cut(s)	84
PscI	ACATGT	2 cut(s)	60, 213
PspCI	CACGTG	1 cut(s)	84
PspN4I	GGNNCC	1 cut(s)	239
PspPI	GGNCC	2 cut(s)	41, 309
RsaI	GTAC	4 cut(s)	54, 59, 239, 296
RsaNI	GTAC	4 cut(s)	53, 58, 238, 295
RseI	CAYNNNNRTG	1 cut(s)	82
SapI	GCTCTTC	1 cut(s)	92
SatI	GCNGC	2 cut(s)	32, 35
Sau96I	GGNCC	2 cut(s)	41, 309
SchI	GAGTC	1 cut(s)	68
ScrFI	CCNGG	1 cut(s)	242
SduI	GDGCHC	1 cut(s)	213
SetI	ASST	4 cut(s)	51, 86, 182, 336
SfaNI	GCATC	1 cut(s)	120
SfcI	CTRYAG	1 cut(s)	298
SmiMI	CAYNNNNRTG	1 cut(s)	82
Sse9I	AATT	1 cut(s)	109
SsiI	CCGC	2 cut(s)	32, 35
SspMI	CTAG	3 cut(s)	17, 38, 346
StyD4I	CCNGG	1 cut(s)	240
TaaI	ACNGT	3 cut(s)	24, 57, 202
TaiI	ACGT	2 cut(s)	86, 336
TasI	AATT	1 cut(s)	109
TatI	WGTACW	1 cut(s)	57
TauI	GCSGC	2 cut(s)	34, 37
TfiI	GAWTC	1 cut(s)	303
VneI	GTGCAC	1 cut(s)	209
XceI	RCATGY	2 cut(s)	64, 217
XspI	CTAG	3 cut(s)	17, 38, 346
ZraI	GACGTC	1 cut(s)	334

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.