Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001513.1

Orthogroup ID

OG0007532

Physical Location & Seq

Genomic Coordinates Reverse (-)

2917 .. 3659

Gene Structure 743 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001513.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 663 bp

atggtggccgcatggctagtacgctccgagccgccactagggccggaggtggtgcagtacatgttggatgctgactcacacacgtggagcatgaggaagagcaaagcgaattggtttcagatcgtggcgatgctggcgtggttggtcgggttagcaaagtggttggatgatatacggatgtggaggaactcggtcacgactattttggtgcacatgttgcatttggttctggtttggtacccggatttcataatcccgactgggattctgtatgtgtttctgattggggtttggtactaccgattcaggcccaagataccggctggaatggacctctggctctcccaggcggatacaattgacccggataaacttgatgaggagttcgacactttctcgaagctgctgaacatgtcgccgttagggggagaagagacgagattaatggatcaattggttagtggttggcgacaatttggagtgtggcttgaggtctggtgcgaccatggtggatttgtgggtagagtgttgagaccggtggtgtgggagaagggaggcgtttgggatgaagtgcaatatggatcgggacctaggcagggcggagcagcggcgatgctgcttggtgcctccggccaatgggtcgatgctaggttaggaggatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005509 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005783 GO:0005829 GO:0005886 GO:0005911 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0009506 GO:0009987 GO:0012505 GO:0016020 GO:0016021 GO:0019722 GO:0019932 GO:0023052 GO:0030054 GO:0031224 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0035556 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044425 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0046872 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055044 GO:0065007 GO:0070013 GO:0071944 GO:0099402

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

C2 PRT_C

Protein Analysis

220

Amino Acids

25.08

Weight (kDa)

5.34

Isoelectric Point (pI)

30.19

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007532)

Species	Orthologous Gene IDs
malus_domestica	MD03G1049300.v1.1
rosa_chinensis	RchiOBHm_Chr2g0107641 RchiOBHm_Chr2g0171191 RchiOBHm_Chr7g0217211
rosa_laevigata	RLG00000016544 RLG00000018440 RLG00000018516
rosa_multiflora	Rmu_sc0000070.1_g000056 Rmu_sc0000147.1_g000002 Rmu_sc0001149.1_g000002 Rmu_sc0001513.1_g000002 Rmu_sc0004372.1_g000001 Rmu_sc0005690.1_g000022 Rmu_sc0007586.1_g000003 Rmu_sc0007734.1_g000006 Rmu_sc0010274.1_g000012
rosa_roxburghii	Rroxscaffold_3G00257030
rosa_samantha	Rh2BG208200 Rh2CG200900 Rh2CG606400 Rh2DG654500 Rh2DG654600 Rh7AG279600 Rh7AG306200 Rh7CG325300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	237
AccB1I	GGYRCC	2 cut(s)	237, 623
AciI	CCGC	5 cut(s)	9, 32, 350, 600, 608
AclWI	GGATC	2 cut(s)	456, 589
AcoI	YGGCCR	2 cut(s)	6, 631
AcvI	CACGTG	1 cut(s)	84
AfaI	GTAC	4 cut(s)	21, 59, 239, 296
AfiI	CCNNNNNNNGG	4 cut(s)	38, 425, 596, 636
AflIII	ACRYGT	4 cut(s)	60, 81, 213, 411
AgeI	ACCGGT	1 cut(s)	535
AjnI	CCWGG	1 cut(s)	345
AleI	CACNNNNGTG	1 cut(s)	82
AluBI	AGCT	1 cut(s)	403
AluI	AGCT	1 cut(s)	403
Alw21I	GWGCWC	1 cut(s)	213
Alw26I	GTCTC	2 cut(s)	428, 526
Alw44I	GTGCAC	1 cut(s)	209
AlwI	GGATC	2 cut(s)	456, 589
AoxI	GGCC	4 cut(s)	6, 41, 308, 631
ApaLI	GTGCAC	1 cut(s)	209
ApeKI	GCWGC	3 cut(s)	403, 605, 616
AseI	ATTAAT	1 cut(s)	443
AsiGI	ACCGGT	1 cut(s)	535
Asp718I	GGTACC	1 cut(s)	237
AspA2I	CCTAGG	1 cut(s)	590
AspS9I	GGNCC	4 cut(s)	41, 309, 331, 587
AsuC2I	CCSGG	2 cut(s)	242, 365
AvaII	GGWCC	2 cut(s)	331, 587
AvrII	CCTAGG	1 cut(s)	590
BaeGI	GKGCMC	1 cut(s)	213
BanI	GGYRCC	2 cut(s)	237, 623
BbrPI	CACGTG	1 cut(s)	84
Bbv12I	GWGCWC	1 cut(s)	213
BbvI	GCAGC	3 cut(s)	390, 603, 617
BceAI	ACGGC	1 cut(s)	403
BciT130I	CCWGG	1 cut(s)	347
BciVI	GTATCC	1 cut(s)	346
BcnI	CCSGG	2 cut(s)	242, 365
BcoDI	GTCTC	2 cut(s)	428, 526
BfaI	CTAG	4 cut(s)	17, 38, 591, 648
BfuI	GTATCC	1 cut(s)	346
BglI	GCCNNNNNGGC	1 cut(s)	40
BisI	GCNGC	6 cut(s)	9, 32, 404, 606, 609, 617
BlnI	CCTAGG	1 cut(s)	590
BlsI	GCNGC	6 cut(s)	10, 33, 405, 607, 610, 618
Bme1390I	CCNGG	3 cut(s)	242, 347, 365
Bme18I	GGWCC	2 cut(s)	331, 587
BmgT120I	GGNCC	4 cut(s)	41, 309, 331, 587
BmiI	GGNNCC	3 cut(s)	239, 588, 625
BmrFI	CCNGG	3 cut(s)	242, 347, 365
BmrI	ACTGGG	1 cut(s)	270
BmsI	GCATC	4 cut(s)	58, 120, 603, 634
BmuI	ACTGGG	1 cut(s)	270
BpuEI	CTTGAG	1 cut(s)	509
BpuMI	CCSGG	2 cut(s)	242, 365
BsaAI	YACGTR	1 cut(s)	84
BsaI	GGTCTC	1 cut(s)	526
BsaJI	CCNNGG	3 cut(s)	345, 505, 590
BsaWI	WCCGGW	1 cut(s)	535
Bsc4I	CCNNNNNNNGG	4 cut(s)	38, 425, 596, 636
Bse118I	RCCGGY	2 cut(s)	319, 535
Bse1I	ACTGG	1 cut(s)	265
BseBI	CCWGG	1 cut(s)	347
BseDI	CCNNGG	3 cut(s)	345, 505, 590
BseGI	GGATG	4 cut(s)	73, 172, 183, 571
BseLI	CCNNNNNNNGG	4 cut(s)	38, 425, 596, 636
BseNI	ACTGG	1 cut(s)	265
BseRI	GAGGAG	1 cut(s)	395
BseSI	GKGCMC	1 cut(s)	213
BseXI	GCAGC	3 cut(s)	390, 603, 617
BsgI	GTGCAG	1 cut(s)	74
BshFI	GGCC	4 cut(s)	8, 43, 310, 633
BshNI	GGYRCC	2 cut(s)	237, 623
BshTI	ACCGGT	1 cut(s)	535
BsiHKAI	GWGCWC	1 cut(s)	213
BsiSI	CCGG	6 cut(s)	44, 242, 320, 365, 536, 630
BslFI	GGGAC	1 cut(s)	600
BslI	CCNNNNNNNGG	4 cut(s)	38, 425, 596, 636
BsmAI	GTCTC	2 cut(s)	428, 526
BsmBI	CGTCTC	1 cut(s)	428
BsmFI	GGGAC	1 cut(s)	600
BsnI	GGCC	4 cut(s)	8, 43, 310, 633
Bso31I	GGTCTC	1 cut(s)	526
Bsp1286I	GDGCHC	1 cut(s)	213
Bsp143I	GATC	3 cut(s)	120, 448, 581
Bsp19I	CCATGG	1 cut(s)	505
BspACI	CCGC	5 cut(s)	9, 32, 350, 600, 608
BspANI	GGCC	4 cut(s)	8, 43, 310, 633
BspLI	GGNNCC	3 cut(s)	239, 588, 625
BspPI	GGATC	2 cut(s)	456, 589
BspQI	GCTCTTC	1 cut(s)	92
BspT107I	GGYRCC	2 cut(s)	237, 623
BspTNI	GGTCTC	1 cut(s)	526
BsrFI	RCCGGY	2 cut(s)	319, 535
BsrI	ACTGG	1 cut(s)	265
BssAI	RCCGGY	2 cut(s)	319, 535
BssECI	CCNNGG	3 cut(s)	345, 505, 590
BssMI	GATC	3 cut(s)	120, 448, 581
BssT1I	CCWWGG	2 cut(s)	505, 590
Bst2UI	CCWGG	1 cut(s)	347
Bst6I	CTCTTC	2 cut(s)	92, 426
BstAPI	GCANNNNNTGC	1 cut(s)	217
BstBAI	YACGTR	1 cut(s)	84
BstC8I	GCNNGC	1 cut(s)	135
BstDSI	CCRYGG	1 cut(s)	505
BstF5I	GGATG	4 cut(s)	73, 172, 183, 571
BstKTI	GATC	3 cut(s)	123, 451, 584
BstMAI	GTCTC	2 cut(s)	428, 526
BstMBI	GATC	3 cut(s)	120, 448, 581
BstMWI	GCNNNNNNNGC	3 cut(s)	40, 134, 217
BstNI	CCWGG	1 cut(s)	347
BstNSI	RCATGY	3 cut(s)	64, 217, 415
BstSCI	CCNGG	3 cut(s)	240, 345, 363
BstSLI	GKGCMC	1 cut(s)	213
BstV1I	GCAGC	3 cut(s)	390, 603, 617
BsuI	GTATCC	1 cut(s)	346
BsuRI	GGCC	4 cut(s)	8, 43, 310, 633
BtgI	CCRYGG	1 cut(s)	505
BtgZI	GCGATG	2 cut(s)	143, 626
BtsCI	GGATG	4 cut(s)	73, 172, 183, 571
Cac8I	GCNNGC	1 cut(s)	135
Cfr10I	RCCGGY	2 cut(s)	319, 535
Cfr13I	GGNCC	4 cut(s)	41, 309, 331, 587
Csp6I	GTAC	4 cut(s)	20, 58, 238, 295
CspAI	ACCGGT	1 cut(s)	535
CviAII	CATG	6 cut(s)	12, 61, 91, 214, 412, 506
CviQI	GTAC	4 cut(s)	20, 58, 238, 295
DpnI	GATC	3 cut(s)	122, 450, 583
DpnII	GATC	3 cut(s)	120, 448, 581
EaeI	YGGCCR	2 cut(s)	6, 631
Eam1104I	CTCTTC	2 cut(s)	92, 426
EarI	CTCTTC	2 cut(s)	92, 426
EciI	GGCGGA	2 cut(s)	365, 615
Eco130I	CCWWGG	2 cut(s)	505, 590
Eco31I	GGTCTC	1 cut(s)	526
Eco47I	GGWCC	2 cut(s)	331, 587
Eco72I	CACGTG	1 cut(s)	84
EcoO109I	RGGNCCY	1 cut(s)	587
EcoRII	CCWGG	1 cut(s)	345
EcoT14I	CCWWGG	2 cut(s)	505, 590
ErhI	CCWWGG	2 cut(s)	505, 590
Esp3I	CGTCTC	1 cut(s)	428
FaeI	CATG	6 cut(s)	15, 64, 94, 217, 415, 509
FaqI	GGGAC	1 cut(s)	600
FatI	CATG	6 cut(s)	11, 60, 90, 213, 411, 505
Fnu4HI	GCNGC	6 cut(s)	9, 32, 404, 606, 609, 617
FokI	GGATG	4 cut(s)	80, 179, 190, 578
Fsp4HI	GCNGC	6 cut(s)	9, 32, 404, 606, 609, 617
FspBI	CTAG	4 cut(s)	17, 38, 591, 648
GluI	GCNGC	6 cut(s)	9, 32, 404, 606, 609, 617
HaeIII	GGCC	4 cut(s)	8, 43, 310, 633
HapII	CCGG	6 cut(s)	44, 242, 320, 365, 536, 630
Hin1II	CATG	6 cut(s)	15, 64, 94, 217, 415, 509
HinfI	GANTC	3 cut(s)	74, 265, 303
HpaII	CCGG	6 cut(s)	44, 242, 320, 365, 536, 630
Hpy166II	GTNNAC	1 cut(s)	211
Hpy188I	TCNGA	3 cut(s)	28, 120, 282
Hpy188III	TCNNGA	4 cut(s)	196, 256, 397, 585
Hpy8I	GTNNAC	1 cut(s)	211
HpyAV	CCTTC	1 cut(s)	544
HpyCH4IV	ACGT	1 cut(s)	83
HpyCH4V	TGCA	4 cut(s)	55, 211, 220, 574
HpyF10VI	GCNNNNNNNGC	3 cut(s)	40, 134, 217
HpySE526I	ACGT	1 cut(s)	83
Hsp92II	CATG	6 cut(s)	15, 64, 94, 217, 415, 509
KpnI	GGTACC	1 cut(s)	241
Kzo9I	GATC	3 cut(s)	120, 448, 581
LguI	GCTCTTC	1 cut(s)	92
LmnI	GCTCC	3 cut(s)	29, 87, 602
Lsp1109I	GCAGC	3 cut(s)	390, 603, 617
LweI	GCATC	4 cut(s)	58, 120, 603, 634
MaeI	CTAG	4 cut(s)	17, 38, 591, 648
MaeII	ACGT	1 cut(s)	83
MaeIII	GTNAC	1 cut(s)	193
MalI	GATC	3 cut(s)	122, 450, 583
MboI	GATC	3 cut(s)	120, 448, 581
MboII	GAAGA	2 cut(s)	109, 443
MfeI	CAATTG	2 cut(s)	357, 452
MhlI	GDGCHC	1 cut(s)	213
MluCI	AATT	4 cut(s)	109, 357, 452, 473
MlyI	GAGTC	1 cut(s)	68
MmeI	TCCRAC	2 cut(s)	45, 144
MnlI	CCTC	9 cut(s)	40, 87, 177, 344, 373, 484, 548, 637, 650
MseI	TTAA	1 cut(s)	443
MslI	CAYNNNNRTG	1 cut(s)	82
MspA1I	CMGCKG	1 cut(s)	608
MspI	CCGG	6 cut(s)	44, 242, 320, 365, 536, 630
MspR9I	CCNGG	3 cut(s)	242, 347, 365
MunI	CAATTG	2 cut(s)	357, 452
MvaI	CCWGG	1 cut(s)	347
MwoI	GCNNNNNNNGC	3 cut(s)	40, 134, 217
NciI	CCSGG	2 cut(s)	242, 365
NcoI	CCATGG	1 cut(s)	505
NdeII	GATC	3 cut(s)	120, 448, 581
NlaIII	CATG	6 cut(s)	15, 64, 94, 217, 415, 509
NlaIV	GGNNCC	3 cut(s)	239, 588, 625
NmuCI	GTSAC	1 cut(s)	193
NspI	RCATGY	3 cut(s)	64, 217, 415
OliI	CACNNNNGTG	1 cut(s)	82
PciI	ACATGT	3 cut(s)	60, 213, 411
PciSI	GCTCTTC	1 cut(s)	92
PfeI	GAWTC	2 cut(s)	265, 303
PinAI	ACCGGT	1 cut(s)	535
PkrI	GCNGC	6 cut(s)	10, 33, 405, 607, 610, 618
PleI	GAGTC	1 cut(s)	68
PmaCI	CACGTG	1 cut(s)	84
PmlI	CACGTG	1 cut(s)	84
PpsI	GAGTC	1 cut(s)	68
Ppu21I	YACGTR	1 cut(s)	84
PpuMI	RGGWCCY	1 cut(s)	587
PscI	ACATGT	3 cut(s)	60, 213, 411
PshBI	ATTAAT	1 cut(s)	443
Psp5II	RGGWCCY	1 cut(s)	587
Psp6I	CCWGG	1 cut(s)	345
PspCI	CACGTG	1 cut(s)	84
PspGI	CCWGG	1 cut(s)	345
PspN4I	GGNNCC	3 cut(s)	239, 588, 625
PspPI	GGNCC	4 cut(s)	41, 309, 331, 587
PspPPI	RGGWCCY	1 cut(s)	587
RsaI	GTAC	4 cut(s)	21, 59, 239, 296
RsaNI	GTAC	4 cut(s)	20, 58, 238, 295
RseI	CAYNNNNRTG	1 cut(s)	82
SapI	GCTCTTC	1 cut(s)	92
SaqAI	TTAA	1 cut(s)	443
SatI	GCNGC	6 cut(s)	9, 32, 404, 606, 609, 617
Sau3AI	GATC	3 cut(s)	120, 448, 581
Sau96I	GGNCC	4 cut(s)	41, 309, 331, 587
SchI	GAGTC	1 cut(s)	68
ScrFI	CCNGG	3 cut(s)	242, 347, 365
SduI	GDGCHC	1 cut(s)	213
SetI	ASST	7 cut(s)	51, 86, 336, 405, 495, 592, 653
SfaNI	GCATC	4 cut(s)	58, 120, 603, 634
SinI	GGWCC	2 cut(s)	331, 587
SmiMI	CAYNNNNRTG	1 cut(s)	82
SmlI	CTYRAG	1 cut(s)	488
SmoI	CTYRAG	1 cut(s)	488
Sse9I	AATT	4 cut(s)	109, 357, 452, 473
SsiI	CCGC	5 cut(s)	9, 32, 350, 600, 608
SspMI	CTAG	4 cut(s)	17, 38, 591, 648
StyD4I	CCNGG	3 cut(s)	240, 345, 363
StyI	CCWWGG	2 cut(s)	505, 590
TaiI	ACGT	1 cut(s)	86
TaqI	TCGA	3 cut(s)	387, 398, 642
TaqII	GACCGA	1 cut(s)	181
TasI	AATT	4 cut(s)	109, 357, 452, 473
TatI	WGTACW	1 cut(s)	57
TauI	GCSGC	3 cut(s)	11, 34, 611
TfiI	GAWTC	2 cut(s)	265, 303
Tru1I	TTAA	1 cut(s)	443
Tru9I	TTAA	1 cut(s)	443
TseFI	GTSAC	1 cut(s)	193
TseI	GCWGC	3 cut(s)	403, 605, 616
Tsp45I	GTSAC	1 cut(s)	193
TspDTI	ATGAA	2 cut(s)	238, 582
TspGWI	ACGGA	1 cut(s)	190
VneI	GTGCAC	1 cut(s)	209
VpaK11BI	GGWCC	2 cut(s)	331, 587
VspI	ATTAAT	1 cut(s)	443
XceI	RCATGY	3 cut(s)	64, 217, 415
XmaJI	CCTAGG	1 cut(s)	590
XspI	CTAG	4 cut(s)	17, 38, 591, 648

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.