Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001149.1

Orthogroup ID

OG0007532

Physical Location & Seq

Genomic Coordinates Reverse (-)

4625 .. 5278

Gene Structure 654 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001149.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 423 bp

atggtagccgcatggctcggacactccaagccgctgctagggccggaggtagtgcggtacatgttggatgctgactcgcacacgtggagcatgaggaagagcaaagcgaattggtttcggatagtggaaatgctagcgtggttggtcgggttagcgaagtggttggatgatatacggaggtggaggaactcggcccaagatactggctggaatggacttcttgctcccctaggcggatacggtttgggcaagaacatgtcactgttagggggagagggaatgagattaatggatcattggctggtggttggtgacgatttggcttatggcttaaggtttggtgttgaccatggtggatttgtgggtggttgtgggtggagtgttgagaccggtggtgtgggagaagtgaggcgtttgggatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005509 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005783 GO:0005829 GO:0005886 GO:0005911 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0009506 GO:0009987 GO:0012505 GO:0016020 GO:0016021 GO:0019722 GO:0019932 GO:0023052 GO:0030054 GO:0031224 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0035556 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044425 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0046872 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055044 GO:0065007 GO:0070013 GO:0071944 GO:0099402

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

C2 PRT_C

Protein Analysis

140

Amino Acids

15.44

Weight (kDa)

7.94

Isoelectric Point (pI)

29.65

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007532)

Species	Orthologous Gene IDs
malus_domestica	MD03G1049300.v1.1
rosa_chinensis	RchiOBHm_Chr2g0107641 RchiOBHm_Chr2g0171191 RchiOBHm_Chr7g0217211
rosa_laevigata	RLG00000016544 RLG00000018440 RLG00000018516
rosa_multiflora	Rmu_sc0000070.1_g000056 Rmu_sc0000147.1_g000002 Rmu_sc0001149.1_g000002 Rmu_sc0001513.1_g000002 Rmu_sc0004372.1_g000001 Rmu_sc0005690.1_g000022 Rmu_sc0007586.1_g000003 Rmu_sc0007734.1_g000006 Rmu_sc0010274.1_g000012
rosa_roxburghii	Rroxscaffold_3G00257030
rosa_samantha	Rh2BG208200 Rh2CG200900 Rh2CG606400 Rh2DG654500 Rh2DG654600 Rh7AG279600 Rh7AG306200 Rh7CG325300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	4 cut(s)	9, 32, 55, 234
AclWI	GGATC	1 cut(s)	300
AcvI	CACGTG	1 cut(s)	84
AfaI	GTAC	1 cut(s)	59
AfiI	CCNNNNNNNGG	2 cut(s)	38, 233
AflII	CTTAAG	1 cut(s)	331
AflIII	ACRYGT	3 cut(s)	60, 81, 255
AgeI	ACCGGT	1 cut(s)	389
Alw26I	GTCTC	1 cut(s)	380
AlwI	GGATC	1 cut(s)	300
AoxI	GGCC	2 cut(s)	41, 192
ApeKI	GCWGC	1 cut(s)	34
AseI	ATTAAT	1 cut(s)	287
AsiGI	ACCGGT	1 cut(s)	389
AspA2I	CCTAGG	1 cut(s)	229
AspS9I	GGNCC	2 cut(s)	41, 193
AsuHPI	GGTGA	1 cut(s)	323
AsuNHI	GCTAGC	1 cut(s)	133
AvrII	CCTAGG	1 cut(s)	229
BbrPI	CACGTG	1 cut(s)	84
BbvI	GCAGC	1 cut(s)	21
BciVI	GTATCC	1 cut(s)	230
BcoDI	GTCTC	1 cut(s)	380
BfaI	CTAG	3 cut(s)	38, 134, 230
BfrI	CTTAAG	1 cut(s)	331
BfuI	GTATCC	1 cut(s)	230
BisI	GCNGC	3 cut(s)	9, 32, 35
BlnI	CCTAGG	1 cut(s)	229
BlsI	GCNGC	3 cut(s)	10, 33, 36
BmgT120I	GGNCC	2 cut(s)	41, 193
BmsI	GCATC	1 cut(s)	58
BmtI	GCTAGC	1 cut(s)	137
BsaAI	YACGTR	1 cut(s)	84
BsaI	GGTCTC	1 cut(s)	380
BsaJI	CCNNGG	2 cut(s)	229, 349
BsaWI	WCCGGW	1 cut(s)	389
Bsc4I	CCNNNNNNNGG	2 cut(s)	38, 233
Bse118I	RCCGGY	1 cut(s)	389
Bse1I	ACTGG	1 cut(s)	208
BseDI	CCNNGG	2 cut(s)	229, 349
BseGI	GGATG	2 cut(s)	73, 172
BseLI	CCNNNNNNNGG	2 cut(s)	38, 233
BseNI	ACTGG	1 cut(s)	208
BseXI	GCAGC	1 cut(s)	21
BshFI	GGCC	2 cut(s)	43, 194
BshTI	ACCGGT	1 cut(s)	389
BsiSI	CCGG	2 cut(s)	44, 390
BslI	CCNNNNNNNGG	2 cut(s)	38, 233
BsmAI	GTCTC	1 cut(s)	380
BsnI	GGCC	2 cut(s)	43, 194
Bso31I	GGTCTC	1 cut(s)	380
Bsp143I	GATC	1 cut(s)	292
Bsp19I	CCATGG	1 cut(s)	349
BspACI	CCGC	4 cut(s)	9, 32, 55, 234
BspANI	GGCC	2 cut(s)	43, 194
BspOI	GCTAGC	1 cut(s)	137
BspPI	GGATC	1 cut(s)	300
BspQI	GCTCTTC	1 cut(s)	92
BspTI	CTTAAG	1 cut(s)	331
BspTNI	GGTCTC	1 cut(s)	380
BsrFI	RCCGGY	1 cut(s)	389
BsrI	ACTGG	1 cut(s)	208
BssAI	RCCGGY	1 cut(s)	389
BssECI	CCNNGG	2 cut(s)	229, 349
BssMI	GATC	1 cut(s)	292
BssT1I	CCWWGG	2 cut(s)	229, 349
Bst4CI	ACNGT	2 cut(s)	242, 264
Bst6I	CTCTTC	1 cut(s)	92
BstAFI	CTTAAG	1 cut(s)	331
BstBAI	YACGTR	1 cut(s)	84
BstC8I	GCNNGC	1 cut(s)	135
BstDSI	CCRYGG	1 cut(s)	349
BstF5I	GGATG	2 cut(s)	73, 172
BstKTI	GATC	1 cut(s)	295
BstMAI	GTCTC	1 cut(s)	380
BstMBI	GATC	1 cut(s)	292
BstMWI	GCNNNNNNNGC	1 cut(s)	40
BstNSI	RCATGY	2 cut(s)	64, 259
BstV1I	GCAGC	1 cut(s)	21
BstXI	CCANNNNNNTGG	1 cut(s)	203
BsuI	GTATCC	1 cut(s)	230
BsuRI	GGCC	2 cut(s)	43, 194
BtgI	CCRYGG	1 cut(s)	349
BtsCI	GGATG	2 cut(s)	73, 172
BtsIMutI	CAGTG	1 cut(s)	260
Cac8I	GCNNGC	1 cut(s)	135
Cfr10I	RCCGGY	1 cut(s)	389
Cfr13I	GGNCC	2 cut(s)	41, 193
Csp6I	GTAC	1 cut(s)	58
CspAI	ACCGGT	1 cut(s)	389
CviAII	CATG	5 cut(s)	12, 61, 91, 256, 350
CviJI	RGCY	9 cut(s)	8, 16, 31, 43, 194, 207, 301, 323, 330
CviKI_1	RGCY	9 cut(s)	8, 16, 31, 43, 194, 207, 301, 323, 330
CviQI	GTAC	1 cut(s)	58
DpnI	GATC	1 cut(s)	294
DpnII	GATC	1 cut(s)	292
Eam1104I	CTCTTC	1 cut(s)	92
EarI	CTCTTC	1 cut(s)	92
EciI	GGCGGA	1 cut(s)	249
Eco130I	CCWWGG	2 cut(s)	229, 349
Eco31I	GGTCTC	1 cut(s)	380
Eco72I	CACGTG	1 cut(s)	84
EcoT14I	CCWWGG	2 cut(s)	229, 349
ErhI	CCWWGG	2 cut(s)	229, 349
FaeI	CATG	5 cut(s)	15, 64, 94, 259, 353
FaiI	YATR	7 cut(s)	13, 62, 92, 173, 257, 327, 351
FatI	CATG	5 cut(s)	11, 60, 90, 255, 349
Fnu4HI	GCNGC	3 cut(s)	9, 32, 35
FokI	GGATG	2 cut(s)	80, 179
Fsp4HI	GCNGC	3 cut(s)	9, 32, 35
FspBI	CTAG	3 cut(s)	38, 134, 230
GluI	GCNGC	3 cut(s)	9, 32, 35
HaeIII	GGCC	2 cut(s)	43, 194
HapII	CCGG	2 cut(s)	44, 390
Hin1II	CATG	5 cut(s)	15, 64, 94, 259, 353
HincII	GTYRAC	1 cut(s)	346
HindII	GTYRAC	1 cut(s)	346
HinfI	GANTC	1 cut(s)	74
HpaII	CCGG	2 cut(s)	44, 390
HphI	GGTGA	1 cut(s)	323
Hpy166II	GTNNAC	1 cut(s)	346
Hpy188I	TCNGA	2 cut(s)	20, 120
Hpy8I	GTNNAC	1 cut(s)	346
HpyCH4III	ACNGT	2 cut(s)	242, 264
HpyCH4IV	ACGT	1 cut(s)	83
HpyF10VI	GCNNNNNNNGC	1 cut(s)	40
HpySE526I	ACGT	1 cut(s)	83
Hsp92II	CATG	5 cut(s)	15, 64, 94, 259, 353
Kzo9I	GATC	1 cut(s)	292
LguI	GCTCTTC	1 cut(s)	92
LmnI	GCTCC	2 cut(s)	87, 229
LpnPI	CCDG	5 cut(s)	57, 189, 193, 287, 403
Lsp1109I	GCAGC	1 cut(s)	21
LweI	GCATC	1 cut(s)	58
MaeI	CTAG	3 cut(s)	38, 134, 230
MaeII	ACGT	1 cut(s)	83
MaeIII	GTNAC	2 cut(s)	258, 311
MalI	GATC	1 cut(s)	294
MboI	GATC	1 cut(s)	292
MboII	GAAGA	1 cut(s)	109
MluCI	AATT	1 cut(s)	109
MlyI	GAGTC	1 cut(s)	68
MmeI	TCCRAC	2 cut(s)	45, 144
MnlI	CCTC	6 cut(s)	40, 87, 171, 177, 268, 402
MseI	TTAA	2 cut(s)	287, 332
MspA1I	CMGCKG	1 cut(s)	34
MspCI	CTTAAG	1 cut(s)	331
MspI	CCGG	2 cut(s)	44, 390
MwoI	GCNNNNNNNGC	1 cut(s)	40
NcoI	CCATGG	1 cut(s)	349
NdeII	GATC	1 cut(s)	292
NheI	GCTAGC	1 cut(s)	133
NlaIII	CATG	5 cut(s)	15, 64, 94, 259, 353
NmeAIII	GCCGAG	1 cut(s)	170
NmuCI	GTSAC	2 cut(s)	258, 311
NspI	RCATGY	2 cut(s)	64, 259
PciI	ACATGT	2 cut(s)	60, 255
PciSI	GCTCTTC	1 cut(s)	92
PinAI	ACCGGT	1 cut(s)	389
PkrI	GCNGC	3 cut(s)	10, 33, 36
PleI	GAGTC	1 cut(s)	68
PmaCI	CACGTG	1 cut(s)	84
PmlI	CACGTG	1 cut(s)	84
PpsI	GAGTC	1 cut(s)	68
Ppu21I	YACGTR	1 cut(s)	84
PscI	ACATGT	2 cut(s)	60, 255
PshBI	ATTAAT	1 cut(s)	287
PspCI	CACGTG	1 cut(s)	84
PspPI	GGNCC	2 cut(s)	41, 193
RsaI	GTAC	1 cut(s)	59
RsaNI	GTAC	1 cut(s)	58
SapI	GCTCTTC	1 cut(s)	92
SaqAI	TTAA	2 cut(s)	287, 332
SatI	GCNGC	3 cut(s)	9, 32, 35
Sau3AI	GATC	1 cut(s)	292
Sau96I	GGNCC	2 cut(s)	41, 193
SchI	GAGTC	1 cut(s)	68
SetI	ASST	4 cut(s)	51, 86, 182, 338
SfaNI	GCATC	1 cut(s)	58
SmlI	CTYRAG	1 cut(s)	331
SmoI	CTYRAG	1 cut(s)	331
Sse9I	AATT	1 cut(s)	109
SsiI	CCGC	4 cut(s)	9, 32, 55, 234
SspMI	CTAG	3 cut(s)	38, 134, 230
StyI	CCWWGG	2 cut(s)	229, 349
TaaI	ACNGT	2 cut(s)	242, 264
TaiI	ACGT	1 cut(s)	86
TasI	AATT	1 cut(s)	109
TauI	GCSGC	2 cut(s)	11, 34
Tru1I	TTAA	2 cut(s)	287, 332
Tru9I	TTAA	2 cut(s)	287, 332
TscAI	CASTG	1 cut(s)	267
TseFI	GTSAC	2 cut(s)	258, 311
TseI	GCWGC	1 cut(s)	34
Tsp45I	GTSAC	2 cut(s)	258, 311
TspGWI	ACGGA	1 cut(s)	190
TspRI	CASTG	1 cut(s)	267
Vha464I	CTTAAG	1 cut(s)	331
VspI	ATTAAT	1 cut(s)	287
XceI	RCATGY	2 cut(s)	64, 259
XmaJI	CCTAGG	1 cut(s)	229
XspI	CTAG	3 cut(s)	38, 134, 230

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.