Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004372.1

Orthogroup ID

OG0007532

Physical Location & Seq

Genomic Coordinates Forward (+)

1231 .. 1871

Gene Structure 641 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004372.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 447 bp

atgatggccgcatggctcgcacgctccgagcagccactagggctagaggtggtgcggtacatgttgaatgctgactcgcacacctggagcatgaggaagagcaaagcgaattggttttggatcatagcgatgctggtgtggttggttcggttggcgaagtggttggatgatatacgaaggcccaagataccggctggaatggacctctggctctcccaggcgaatacgatcaaccatgaacttgatgaggagttcgacactttctcggagctgccgaacatgtcgccgttagggggagaggggacgagattaatggatcgatggttggtggttggcgacaatttggtgtatggcttgaggtctagtgttgaccatggtagatttgtgggtagctgtgggtggagtgttgagactagtggtgtgggagaagggaggcgtttgggatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005509 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005783 GO:0005829 GO:0005886 GO:0005911 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0009506 GO:0009987 GO:0012505 GO:0016020 GO:0016021 GO:0019722 GO:0019932 GO:0023052 GO:0030054 GO:0031224 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0035556 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044425 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0046872 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055044 GO:0065007 GO:0070013 GO:0071944 GO:0099402

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

C2 PRT_C

Protein Analysis

148

Amino Acids

16.87

Weight (kDa)

5.9

Isoelectric Point (pI)

52.05

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007532)

Species	Orthologous Gene IDs
malus_domestica	MD03G1049300.v1.1
rosa_chinensis	RchiOBHm_Chr2g0107641 RchiOBHm_Chr2g0171191 RchiOBHm_Chr7g0217211
rosa_laevigata	RLG00000016544 RLG00000018440 RLG00000018516
rosa_multiflora	Rmu_sc0000070.1_g000056 Rmu_sc0000147.1_g000002 Rmu_sc0001149.1_g000002 Rmu_sc0001513.1_g000002 Rmu_sc0004372.1_g000001 Rmu_sc0005690.1_g000022 Rmu_sc0007586.1_g000003 Rmu_sc0007734.1_g000006 Rmu_sc0010274.1_g000012
rosa_roxburghii	Rroxscaffold_3G00257030
rosa_samantha	Rh2BG208200 Rh2CG200900 Rh2CG606400 Rh2DG654500 Rh2DG654600 Rh7AG279600 Rh7AG306200 Rh7CG325300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	9, 55
AclWI	GGATC	2 cut(s)	128, 324
AcoI	YGGCCR	1 cut(s)	6
AfaI	GTAC	1 cut(s)	59
AfiI	CCNNNNNNNGG	1 cut(s)	293
AflIII	ACRYGT	2 cut(s)	60, 279
AgsI	TTSAA	1 cut(s)	67
AhlI	ACTAGT	1 cut(s)	413
AjnI	CCWGG	2 cut(s)	83, 216
AluBI	AGCT	2 cut(s)	271, 393
AluI	AGCT	2 cut(s)	271, 393
Alw26I	GTCTC	1 cut(s)	404
AlwI	GGATC	2 cut(s)	128, 324
AoxI	GGCC	2 cut(s)	6, 179
ApeKI	GCWGC	2 cut(s)	31, 271
AseI	ATTAAT	1 cut(s)	311
AspS9I	GGNCC	2 cut(s)	180, 202
AvaII	GGWCC	1 cut(s)	202
BbvI	GCAGC	2 cut(s)	43, 258
BccI	CCATC	1 cut(s)	315
BceAI	ACGGC	1 cut(s)	271
BciT130I	CCWGG	2 cut(s)	85, 218
BcoDI	GTCTC	1 cut(s)	404
BcuI	ACTAGT	1 cut(s)	413
BfaI	CTAG	4 cut(s)	38, 44, 363, 414
BglI	GCCNNNNNGGC	1 cut(s)	40
BisI	GCNGC	3 cut(s)	9, 32, 272
BlsI	GCNGC	3 cut(s)	10, 33, 273
Bme1390I	CCNGG	2 cut(s)	85, 218
Bme18I	GGWCC	1 cut(s)	202
BmgT120I	GGNCC	2 cut(s)	180, 202
BmrFI	CCNGG	2 cut(s)	85, 218
BmsI	GCATC	1 cut(s)	120
BpmI	CTGGAG	1 cut(s)	106
BpuEI	CTTGAG	1 cut(s)	376
Bsa29I	ATCGAT	1 cut(s)	319
BsaJI	CCNNGG	2 cut(s)	216, 373
Bsc4I	CCNNNNNNNGG	1 cut(s)	293
Bse118I	RCCGGY	1 cut(s)	190
BseBI	CCWGG	2 cut(s)	85, 218
BseCI	ATCGAT	1 cut(s)	319
BseDI	CCNNGG	2 cut(s)	216, 373
BseGI	GGATG	1 cut(s)	172
BseLI	CCNNNNNNNGG	1 cut(s)	293
BseRI	GAGGAG	1 cut(s)	263
BseXI	GCAGC	2 cut(s)	43, 258
BshFI	GGCC	2 cut(s)	8, 181
BshVI	ATCGAT	1 cut(s)	319
BsiSI	CCGG	1 cut(s)	191
BslFI	GGGAC	1 cut(s)	316
BslI	CCNNNNNNNGG	1 cut(s)	293
BsmAI	GTCTC	1 cut(s)	404
BsmFI	GGGAC	1 cut(s)	316
BsmI	GAATGC	1 cut(s)	73
BsnI	GGCC	2 cut(s)	8, 181
Bsp143I	GATC	3 cut(s)	120, 228, 316
Bsp19I	CCATGG	1 cut(s)	373
BspACI	CCGC	2 cut(s)	9, 55
BspANI	GGCC	2 cut(s)	8, 181
BspDI	ATCGAT	1 cut(s)	319
BspPI	GGATC	2 cut(s)	128, 324
BspQI	GCTCTTC	1 cut(s)	92
BsrFI	RCCGGY	1 cut(s)	190
BssAI	RCCGGY	1 cut(s)	190
BssECI	CCNNGG	2 cut(s)	216, 373
BssMI	GATC	3 cut(s)	120, 228, 316
BssT1I	CCWWGG	1 cut(s)	373
Bst2UI	CCWGG	2 cut(s)	85, 218
Bst6I	CTCTTC	1 cut(s)	92
BstC8I	GCNNGC	2 cut(s)	18, 22
BstDSI	CCRYGG	1 cut(s)	373
BstF5I	GGATG	1 cut(s)	172
BstKTI	GATC	3 cut(s)	123, 231, 319
BstMAI	GTCTC	1 cut(s)	404
BstMBI	GATC	3 cut(s)	120, 228, 316
BstMWI	GCNNNNNNNGC	2 cut(s)	17, 40
BstNI	CCWGG	2 cut(s)	85, 218
BstNSI	RCATGY	2 cut(s)	64, 283
BstSCI	CCNGG	2 cut(s)	83, 216
BstV1I	GCAGC	2 cut(s)	43, 258
Bsu15I	ATCGAT	1 cut(s)	319
BsuRI	GGCC	2 cut(s)	8, 181
BsuTUI	ATCGAT	1 cut(s)	319
BtgI	CCRYGG	1 cut(s)	373
BtgZI	GCGATG	1 cut(s)	143
BtsCI	GGATG	1 cut(s)	172
Cac8I	GCNNGC	2 cut(s)	18, 22
Cfr10I	RCCGGY	1 cut(s)	190
Cfr13I	GGNCC	2 cut(s)	180, 202
ClaI	ATCGAT	1 cut(s)	319
Csp6I	GTAC	1 cut(s)	58
CviAII	CATG	6 cut(s)	12, 61, 91, 236, 280, 374
CviQI	GTAC	1 cut(s)	58
DpnI	GATC	3 cut(s)	122, 230, 318
DpnII	GATC	3 cut(s)	120, 228, 316
EaeI	YGGCCR	1 cut(s)	6
Eam1104I	CTCTTC	1 cut(s)	92
EarI	CTCTTC	1 cut(s)	92
Eco130I	CCWWGG	1 cut(s)	373
Eco47I	GGWCC	1 cut(s)	202
EcoRII	CCWGG	2 cut(s)	83, 216
EcoT14I	CCWWGG	1 cut(s)	373
ErhI	CCWWGG	1 cut(s)	373
FaeI	CATG	6 cut(s)	15, 64, 94, 239, 283, 377
FaiI	YATR	9 cut(s)	13, 62, 92, 125, 173, 237, 281, 351, 375
FaqI	GGGAC	1 cut(s)	316
FatI	CATG	6 cut(s)	11, 60, 90, 235, 279, 373
Fnu4HI	GCNGC	3 cut(s)	9, 32, 272
FokI	GGATG	1 cut(s)	179
Fsp4HI	GCNGC	3 cut(s)	9, 32, 272
FspBI	CTAG	4 cut(s)	38, 44, 363, 414
GluI	GCNGC	3 cut(s)	9, 32, 272
GsuI	CTGGAG	1 cut(s)	106
HaeIII	GGCC	2 cut(s)	8, 181
HapII	CCGG	1 cut(s)	191
Hin1II	CATG	6 cut(s)	15, 64, 94, 239, 283, 377
HincII	GTYRAC	1 cut(s)	370
HindII	GTYRAC	1 cut(s)	370
HinfI	GANTC	1 cut(s)	74
HpaII	CCGG	1 cut(s)	191
Hpy166II	GTNNAC	1 cut(s)	370
Hpy188I	TCNGA	2 cut(s)	28, 268
Hpy8I	GTNNAC	1 cut(s)	370
HpyAV	CCTTC	2 cut(s)	171, 422
HpyF10VI	GCNNNNNNNGC	2 cut(s)	17, 40
Hsp92II	CATG	6 cut(s)	15, 64, 94, 239, 283, 377
Kzo9I	GATC	3 cut(s)	120, 228, 316
LguI	GCTCTTC	1 cut(s)	92
LmnI	GCTCC	3 cut(s)	29, 87, 268
LpnPI	CCDG	8 cut(s)	70, 97, 119, 180, 193, 203, 204, 230
Lsp1109I	GCAGC	2 cut(s)	43, 258
LweI	GCATC	1 cut(s)	120
MaeI	CTAG	4 cut(s)	38, 44, 363, 414
MalI	GATC	3 cut(s)	122, 230, 318
MboI	GATC	3 cut(s)	120, 228, 316
MboII	GAAGA	1 cut(s)	109
MluCI	AATT	2 cut(s)	109, 340
MlyI	GAGTC	1 cut(s)	68
MmeI	TCCRAC	1 cut(s)	144
MnlI	CCTC	7 cut(s)	40, 87, 215, 241, 292, 351, 426
MseI	TTAA	1 cut(s)	311
MslI	CAYNNNNRTG	1 cut(s)	128
MspI	CCGG	1 cut(s)	191
MspR9I	CCNGG	2 cut(s)	85, 218
Mva1269I	GAATGC	1 cut(s)	73
MvaI	CCWGG	2 cut(s)	85, 218
MwoI	GCNNNNNNNGC	2 cut(s)	17, 40
NcoI	CCATGG	1 cut(s)	373
NdeII	GATC	3 cut(s)	120, 228, 316
NlaIII	CATG	6 cut(s)	15, 64, 94, 239, 283, 377
NspI	RCATGY	2 cut(s)	64, 283
PciI	ACATGT	2 cut(s)	60, 279
PciSI	GCTCTTC	1 cut(s)	92
PcsI	WCGNNNNNNNCGW	2 cut(s)	24, 272
PctI	GAATGC	1 cut(s)	73
PkrI	GCNGC	3 cut(s)	10, 33, 273
PleI	GAGTC	1 cut(s)	68
PpsI	GAGTC	1 cut(s)	68
PscI	ACATGT	2 cut(s)	60, 279
PshBI	ATTAAT	1 cut(s)	311
Psp6I	CCWGG	2 cut(s)	83, 216
PspGI	CCWGG	2 cut(s)	83, 216
PspPI	GGNCC	2 cut(s)	180, 202
RsaI	GTAC	1 cut(s)	59
RsaNI	GTAC	1 cut(s)	58
RseI	CAYNNNNRTG	1 cut(s)	128
SapI	GCTCTTC	1 cut(s)	92
SaqAI	TTAA	1 cut(s)	311
SatI	GCNGC	3 cut(s)	9, 32, 272
Sau3AI	GATC	3 cut(s)	120, 228, 316
Sau96I	GGNCC	2 cut(s)	180, 202
SchI	GAGTC	1 cut(s)	68
ScrFI	CCNGG	2 cut(s)	85, 218
SetI	ASST	6 cut(s)	51, 86, 207, 273, 362, 395
SfaNI	GCATC	1 cut(s)	120
SinI	GGWCC	1 cut(s)	202
SmiMI	CAYNNNNRTG	1 cut(s)	128
SmlI	CTYRAG	1 cut(s)	355
SmoI	CTYRAG	1 cut(s)	355
SpeI	ACTAGT	1 cut(s)	413
Sse9I	AATT	2 cut(s)	109, 340
SsiI	CCGC	2 cut(s)	9, 55
SspMI	CTAG	4 cut(s)	38, 44, 363, 414
StyD4I	CCNGG	2 cut(s)	83, 216
StyI	CCWWGG	1 cut(s)	373
TaqI	TCGA	2 cut(s)	255, 319
TasI	AATT	2 cut(s)	109, 340
TauI	GCSGC	1 cut(s)	11
Tru1I	TTAA	1 cut(s)	311
Tru9I	TTAA	1 cut(s)	311
TseI	GCWGC	2 cut(s)	31, 271
TspDTI	ATGAA	1 cut(s)	252
VpaK11BI	GGWCC	1 cut(s)	202
VspI	ATTAAT	1 cut(s)	311
XceI	RCATGY	2 cut(s)	64, 283
XspI	CTAG	4 cut(s)	38, 44, 363, 414

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.