Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0007532

Physical Location & Seq

Genomic Coordinates Forward (+)

29775670 .. 29776082

Gene Structure 413 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000018440

Sequence Viewer

CDS Protein Promoter (2k)

Length: 342 bp

ATGGTGGCAGCATGGCTCGCACGCTCTGAGCCGCCGCTAGGGCTGGAGGTGGTGGGGTCGATGCTGGCGTGGTTGGTCGGGTTAGCGAAGTGGTTATATGATATACGAAGGTGGAGGAACTCGGTGACGACGGTTTTGGTGCACATGTTGTATTTGGTTCTGCTTTGGTACCCAGATTTGATAATCCCGATTAGGTTTCTGTATGTGTTTCTGATTGGGGTTTGGTACTACCGGTTCAGGCCCAAGATACCTGCTGGAATGGACCTCTGGCTCTCCCAGGCGGATACGGTCGACCCGGATGAACTTGATGAGGAGTTCGACACTTTCTCGAAGCTGCCGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005509 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005783 GO:0005829 GO:0005886 GO:0005911 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0009506 GO:0009987 GO:0012505 GO:0016020 GO:0016021 GO:0019722 GO:0019932 GO:0023052 GO:0030054 GO:0031224 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0035556 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044425 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0046872 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055044 GO:0065007 GO:0070013 GO:0071944 GO:0099402

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

C2 PRT_C

Protein Analysis

114

Amino Acids

13.3

Weight (kDa)

4.96

Isoelectric Point (pI)

43.03

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PRT_C	PF08372	63 - 109	1e-14	Plant phosphoribosyltransferase C-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007532)

Species	Orthologous Gene IDs
malus_domestica	MD03G1049300.v1.1
rosa_chinensis	RchiOBHm_Chr2g0107641 RchiOBHm_Chr2g0171191 RchiOBHm_Chr7g0217211
rosa_laevigata	RLG00000016544 RLG00000018440 RLG00000018516
rosa_multiflora	Rmu_sc0000070.1_g000056 Rmu_sc0000147.1_g000002 Rmu_sc0001149.1_g000002 Rmu_sc0001513.1_g000002 Rmu_sc0004372.1_g000001 Rmu_sc0005690.1_g000022 Rmu_sc0007586.1_g000003 Rmu_sc0007734.1_g000006 Rmu_sc0010274.1_g000012
rosa_roxburghii	Rroxscaffold_3G00257030
rosa_samantha	Rh2BG208200 Rh2CG200900 Rh2CG606400 Rh2DG654500 Rh2DG654600 Rh7AG279600 Rh7AG306200 Rh7CG325300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	259
Acc65I	GGTACC	1 cut(s)	168
AccB1I	GGYRCC	1 cut(s)	168
AccI	GTMKAC	1 cut(s)	291
AciI	CCGC	3 cut(s)	32, 35, 281
AfaI	GTAC	2 cut(s)	170, 227
AfiI	CCNNNNNNNGG	1 cut(s)	38
AflIII	ACRYGT	1 cut(s)	144
AgeI	ACCGGT	1 cut(s)	231
AjnI	CCWGG	1 cut(s)	276
AluBI	AGCT	1 cut(s)	334
AluI	AGCT	1 cut(s)	334
Alw21I	GWGCWC	1 cut(s)	144
Alw44I	GTGCAC	1 cut(s)	140
AoxI	GGCC	1 cut(s)	239
ApaLI	GTGCAC	1 cut(s)	140
ApeKI	GCWGC	2 cut(s)	8, 334
ArsI	GACNNNNNNTTYG	2 cut(s)	118, 150
AsiGI	ACCGGT	1 cut(s)	231
Asp718I	GGTACC	1 cut(s)	168
AspS9I	GGNCC	2 cut(s)	240, 262
AsuC2I	CCSGG	1 cut(s)	296
AsuHPI	GGTGA	1 cut(s)	136
AvaII	GGWCC	1 cut(s)	262
BaeGI	GKGCMC	1 cut(s)	144
BanI	GGYRCC	1 cut(s)	168
Bbv12I	GWGCWC	1 cut(s)	144
BbvI	GCAGC	2 cut(s)	20, 321
BceAI	ACGGC	1 cut(s)	322
BciT130I	CCWGG	1 cut(s)	278
BciVI	GTATCC	1 cut(s)	277
BcnI	CCSGG	1 cut(s)	296
BfaI	CTAG	1 cut(s)	38
BfuAI	ACCTGC	1 cut(s)	259
BfuI	GTATCC	1 cut(s)	277
BglI	GCCNNNNNGGC	1 cut(s)	40
BisI	GCNGC	4 cut(s)	9, 32, 35, 335
BlsI	GCNGC	4 cut(s)	10, 33, 36, 336
Bme1390I	CCNGG	2 cut(s)	278, 296
Bme18I	GGWCC	1 cut(s)	262
BmgT120I	GGNCC	2 cut(s)	240, 262
BmiI	GGNNCC	1 cut(s)	170
BmrFI	CCNGG	2 cut(s)	278, 296
BmsI	GCATC	1 cut(s)	51
BpmI	CTGGAG	1 cut(s)	65
BpuMI	CCSGG	1 cut(s)	296
BsaJI	CCNNGG	1 cut(s)	276
BsaWI	WCCGGW	1 cut(s)	231
Bsc4I	CCNNNNNNNGG	1 cut(s)	38
Bse118I	RCCGGY	1 cut(s)	231
BseBI	CCWGG	1 cut(s)	278
BseDI	CCNNGG	1 cut(s)	276
BseGI	GGATG	1 cut(s)	304
BseLI	CCNNNNNNNGG	1 cut(s)	38
BseMII	CTCAG	1 cut(s)	18
BseRI	GAGGAG	1 cut(s)	326
BseSI	GKGCMC	1 cut(s)	144
BseXI	GCAGC	2 cut(s)	20, 321
Bsh1285I	CGRYCG	1 cut(s)	291
BshFI	GGCC	1 cut(s)	241
BshNI	GGYRCC	1 cut(s)	168
BshTI	ACCGGT	1 cut(s)	231
BsiEI	CGRYCG	1 cut(s)	291
BsiHKAI	GWGCWC	1 cut(s)	144
BsiSI	CCGG	2 cut(s)	232, 296
BslI	CCNNNNNNNGG	1 cut(s)	38
BsnI	GGCC	1 cut(s)	241
Bsp1286I	GDGCHC	1 cut(s)	144
BspACI	CCGC	3 cut(s)	32, 35, 281
BspANI	GGCC	1 cut(s)	241
BspCNI	CTCAG	1 cut(s)	19
BspLI	GGNNCC	1 cut(s)	170
BspMI	ACCTGC	1 cut(s)	259
BspT107I	GGYRCC	1 cut(s)	168
BsrFI	RCCGGY	1 cut(s)	231
BssAI	RCCGGY	1 cut(s)	231
BssECI	CCNNGG	1 cut(s)	276
Bst2UI	CCWGG	1 cut(s)	278
Bst4CI	ACNGT	2 cut(s)	133, 289
BstC8I	GCNNGC	3 cut(s)	18, 22, 66
BstDEI	CTNAG	1 cut(s)	27
BstF5I	GGATG	1 cut(s)	304
BstMCI	CGRYCG	1 cut(s)	291
BstMWI	GCNNNNNNNGC	2 cut(s)	17, 40
BstNI	CCWGG	1 cut(s)	278
BstNSI	RCATGY	1 cut(s)	148
BstSCI	CCNGG	2 cut(s)	276, 294
BstSLI	GKGCMC	1 cut(s)	144
BstV1I	GCAGC	2 cut(s)	20, 321
BsuI	GTATCC	1 cut(s)	277
BsuRI	GGCC	1 cut(s)	241
BtsCI	GGATG	1 cut(s)	304
BveI	ACCTGC	1 cut(s)	259
Cac8I	GCNNGC	3 cut(s)	18, 22, 66
Cfr10I	RCCGGY	1 cut(s)	231
Cfr13I	GGNCC	2 cut(s)	240, 262
Csp6I	GTAC	2 cut(s)	169, 226
CspAI	ACCGGT	1 cut(s)	231
CviAII	CATG	2 cut(s)	12, 145
CviJI	RGCY	6 cut(s)	16, 31, 43, 241, 271, 334
CviKI_1	RGCY	6 cut(s)	16, 31, 43, 241, 271, 334
CviQI	GTAC	2 cut(s)	169, 226
DdeI	CTNAG	1 cut(s)	27
EciI	GGCGGA	1 cut(s)	296
Eco47I	GGWCC	1 cut(s)	262
EcoRII	CCWGG	1 cut(s)	276
FaeI	CATG	2 cut(s)	15, 148
FaiI	YATR	6 cut(s)	13, 97, 99, 104, 146, 204
FatI	CATG	2 cut(s)	11, 144
FblI	GTMKAC	1 cut(s)	291
Fnu4HI	GCNGC	4 cut(s)	9, 32, 35, 335
FokI	GGATG	1 cut(s)	311
Fsp4HI	GCNGC	4 cut(s)	9, 32, 35, 335
FspBI	CTAG	1 cut(s)	38
GluI	GCNGC	4 cut(s)	9, 32, 35, 335
GsuI	CTGGAG	1 cut(s)	65
HaeIII	GGCC	1 cut(s)	241
HapII	CCGG	2 cut(s)	232, 296
Hin1II	CATG	2 cut(s)	15, 148
HincII	GTYRAC	1 cut(s)	292
HindII	GTYRAC	1 cut(s)	292
HpaII	CCGG	2 cut(s)	232, 296
HphI	GGTGA	1 cut(s)	136
Hpy166II	GTNNAC	2 cut(s)	142, 292
Hpy188I	TCNGA	2 cut(s)	28, 213
Hpy188III	TCNNGA	2 cut(s)	187, 328
Hpy8I	GTNNAC	2 cut(s)	142, 292
Hpy99I	CGWCG	1 cut(s)	133
HpyAV	CCTTC	1 cut(s)	102
HpyCH4III	ACNGT	2 cut(s)	133, 289
HpyCH4V	TGCA	1 cut(s)	142
HpyF10VI	GCNNNNNNNGC	2 cut(s)	17, 40
HpyF3I	CTNAG	1 cut(s)	27
Hsp92II	CATG	2 cut(s)	15, 148
KpnI	GGTACC	1 cut(s)	172
Lsp1109I	GCAGC	2 cut(s)	20, 321
LweI	GCATC	1 cut(s)	51
MaeI	CTAG	1 cut(s)	38
MaeIII	GTNAC	1 cut(s)	124
MhlI	GDGCHC	1 cut(s)	144
MnlI	CCTC	4 cut(s)	40, 108, 275, 304
MspI	CCGG	2 cut(s)	232, 296
MspR9I	CCNGG	2 cut(s)	278, 296
MvaI	CCWGG	1 cut(s)	278
MwoI	GCNNNNNNNGC	2 cut(s)	17, 40
NciI	CCSGG	1 cut(s)	296
NlaIII	CATG	2 cut(s)	15, 148
NlaIV	GGNNCC	1 cut(s)	170
NmuCI	GTSAC	1 cut(s)	124
NspI	RCATGY	1 cut(s)	148
PciI	ACATGT	1 cut(s)	144
PcsI	WCGNNNNNNNCGW	2 cut(s)	65, 335
PinAI	ACCGGT	1 cut(s)	231
PkrI	GCNGC	4 cut(s)	10, 33, 36, 336
PscI	ACATGT	1 cut(s)	144
Psp6I	CCWGG	1 cut(s)	276
PspGI	CCWGG	1 cut(s)	276
PspN4I	GGNNCC	1 cut(s)	170
PspPI	GGNCC	2 cut(s)	240, 262
PsrI	GAACNNNNNNTAC	2 cut(s)	218, 250
RsaI	GTAC	2 cut(s)	170, 227
RsaNI	GTAC	2 cut(s)	169, 226
SalI	GTCGAC	1 cut(s)	290
SatI	GCNGC	4 cut(s)	9, 32, 35, 335
Sau96I	GGNCC	2 cut(s)	240, 262
ScrFI	CCNGG	2 cut(s)	278, 296
SduI	GDGCHC	1 cut(s)	144
SetI	ASST	6 cut(s)	51, 113, 197, 253, 267, 336
SfaNI	GCATC	1 cut(s)	51
SinI	GGWCC	1 cut(s)	262
SsiI	CCGC	3 cut(s)	32, 35, 281
SspMI	CTAG	1 cut(s)	38
StyD4I	CCNGG	2 cut(s)	276, 294
TaaI	ACNGT	2 cut(s)	133, 289
TaqI	TCGA	4 cut(s)	59, 291, 318, 329
TauI	GCSGC	2 cut(s)	34, 37
TseFI	GTSAC	1 cut(s)	124
TseI	GCWGC	2 cut(s)	8, 334
Tsp45I	GTSAC	1 cut(s)	124
TspDTI	ATGAA	1 cut(s)	315
VneI	GTGCAC	1 cut(s)	140
VpaK11BI	GGWCC	1 cut(s)	262
XceI	RCATGY	1 cut(s)	148
XmiI	GTMKAC	1 cut(s)	291
XspI	CTAG	1 cut(s)	38

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.