Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000147.1

Orthogroup ID

OG0007532

Physical Location & Seq

Genomic Coordinates Reverse (-)

3841 .. 4613

Gene Structure 773 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000147.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 528 bp

atggtggctgcatggctcgcacgcttcaagctgccactagggccggaggtggtgcggtacatgttggatgctgactcacacgcgtggagcatgaggaagagcaaagcgaattggtttcggattgtggcgattctggcgtggttagttgggttactgaagtggttggatgatatacggaggtggaggaactcggtgactgcggttttggtgcacatgttgtatttggttctggtttggtacctgtatttgataatcccgactgggtttctatatgtgtttctgattggggtttggtactaccggttcaggcccaagataccggctggaatggacctctggttctctcaggcggatacagtcgaccccgatgaacttgatgaagagttcgacactttctcggagagaagtgaggcgtttgggatgaaatgcactatgaatcgggacccaggaagggcagagcagcggcggtgctgcttggtgccaccggccaatgggtcaatggtaggttgggaagatgaaaagtgctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005509 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005783 GO:0005829 GO:0005886 GO:0005911 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0009506 GO:0009987 GO:0012505 GO:0016020 GO:0016021 GO:0019722 GO:0019932 GO:0023052 GO:0030054 GO:0031224 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0035556 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044425 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0046872 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055044 GO:0065007 GO:0070013 GO:0071944 GO:0099402

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

C2 PRT_C

Protein Analysis

175

Amino Acids

20.55

Weight (kDa)

6.73

Isoelectric Point (pI)

39.58

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007532)

Species	Orthologous Gene IDs
malus_domestica	MD03G1049300.v1.1
rosa_chinensis	RchiOBHm_Chr2g0107641 RchiOBHm_Chr2g0171191 RchiOBHm_Chr7g0217211
rosa_laevigata	RLG00000016544 RLG00000018440 RLG00000018516
rosa_multiflora	Rmu_sc0000070.1_g000056 Rmu_sc0000147.1_g000002 Rmu_sc0001149.1_g000002 Rmu_sc0001513.1_g000002 Rmu_sc0004372.1_g000001 Rmu_sc0005690.1_g000022 Rmu_sc0007586.1_g000003 Rmu_sc0007734.1_g000006 Rmu_sc0010274.1_g000012
rosa_roxburghii	Rroxscaffold_3G00257030
rosa_samantha	Rh2BG208200 Rh2CG200900 Rh2CG606400 Rh2DG654500 Rh2DG654600 Rh7AG279600 Rh7AG306200 Rh7CG325300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	237
AccB1I	GGYRCC	2 cut(s)	237, 478
AccI	GTMKAC	1 cut(s)	360
AccII	CGCG	1 cut(s)	83
AciI	CCGC	5 cut(s)	55, 200, 350, 463, 466
AcoI	YGGCCR	1 cut(s)	486
AcuI	CTGAAG	1 cut(s)	176
AfaI	GTAC	3 cut(s)	59, 239, 296
AfiI	CCNNNNNNNGG	2 cut(s)	451, 491
AflIII	ACRYGT	3 cut(s)	60, 81, 213
AgeI	ACCGGT	1 cut(s)	300
AgsI	TTSAA	1 cut(s)	28
AjnI	CCWGG	1 cut(s)	445
AleI	CACNNNNGTG	1 cut(s)	82
AloI	GAACNNNNNNTCC	2 cut(s)	323, 355
AluBI	AGCT	1 cut(s)	31
AluI	AGCT	1 cut(s)	31
Alw21I	GWGCWC	1 cut(s)	213
Alw44I	GTGCAC	1 cut(s)	209
AoxI	GGCC	3 cut(s)	41, 308, 486
ApaLI	GTGCAC	1 cut(s)	209
ApeKI	GCWGC	4 cut(s)	8, 31, 460, 471
ArsI	GACNNNNNNTTYG	2 cut(s)	187, 219
AsiGI	ACCGGT	1 cut(s)	300
Asp718I	GGTACC	1 cut(s)	237
AspS9I	GGNCC	4 cut(s)	41, 309, 331, 442
AsuHPI	GGTGA	1 cut(s)	205
AvaII	GGWCC	2 cut(s)	331, 442
BaeGI	GKGCMC	1 cut(s)	213
BanI	GGYRCC	2 cut(s)	237, 478
Bbv12I	GWGCWC	1 cut(s)	213
BbvI	GCAGC	3 cut(s)	18, 458, 472
BciT130I	CCWGG	1 cut(s)	447
BciVI	GTATCC	1 cut(s)	346
BfaI	CTAG	2 cut(s)	38, 526
BfuI	GTATCC	1 cut(s)	346
BglI	GCCNNNNNGGC	1 cut(s)	40
BisI	GCNGC	5 cut(s)	9, 32, 461, 464, 472
BlsI	GCNGC	5 cut(s)	10, 33, 462, 465, 473
Bme1390I	CCNGG	1 cut(s)	447
Bme18I	GGWCC	2 cut(s)	331, 442
BmgT120I	GGNCC	4 cut(s)	41, 309, 331, 442
BmiI	GGNNCC	4 cut(s)	239, 443, 444, 480
BmrFI	CCNGG	1 cut(s)	447
BmrI	ACTGGG	1 cut(s)	270
BmsI	GCATC	1 cut(s)	58
BmuI	ACTGGG	1 cut(s)	270
BsaJI	CCNNGG	1 cut(s)	445
BsaWI	WCCGGW	1 cut(s)	300
Bsc4I	CCNNNNNNNGG	2 cut(s)	451, 491
Bse118I	RCCGGY	3 cut(s)	300, 319, 484
Bse1I	ACTGG	1 cut(s)	265
BseBI	CCWGG	1 cut(s)	447
BseDI	CCNNGG	1 cut(s)	445
BseGI	GGATG	3 cut(s)	73, 172, 426
BseLI	CCNNNNNNNGG	2 cut(s)	451, 491
BseMII	CTCAG	1 cut(s)	359
BseNI	ACTGG	1 cut(s)	265
BseSI	GKGCMC	1 cut(s)	213
BseXI	GCAGC	3 cut(s)	18, 458, 472
Bsh1236I	CGCG	1 cut(s)	83
BshFI	GGCC	3 cut(s)	43, 310, 488
BshNI	GGYRCC	2 cut(s)	237, 478
BshTI	ACCGGT	1 cut(s)	300
BsiHKAI	GWGCWC	1 cut(s)	213
BsiSI	CCGG	4 cut(s)	44, 301, 320, 485
BslFI	GGGAC	1 cut(s)	455
BslI	CCNNNNNNNGG	2 cut(s)	451, 491
BsmFI	GGGAC	1 cut(s)	455
BsnI	GGCC	3 cut(s)	43, 310, 488
Bsp1286I	GDGCHC	1 cut(s)	213
BspACI	CCGC	5 cut(s)	55, 200, 350, 463, 466
BspANI	GGCC	3 cut(s)	43, 310, 488
BspCNI	CTCAG	1 cut(s)	358
BspFNI	CGCG	1 cut(s)	83
BspLI	GGNNCC	4 cut(s)	239, 443, 444, 480
BspQI	GCTCTTC	1 cut(s)	92
BspT107I	GGYRCC	2 cut(s)	237, 478
BsrFI	RCCGGY	3 cut(s)	300, 319, 484
BsrI	ACTGG	1 cut(s)	265
BssAI	RCCGGY	3 cut(s)	300, 319, 484
BssECI	CCNNGG	1 cut(s)	445
Bst2UI	CCWGG	1 cut(s)	447
Bst4CI	ACNGT	1 cut(s)	358
Bst6I	CTCTTC	2 cut(s)	92, 375
BstC8I	GCNNGC	2 cut(s)	18, 22
BstDEI	CTNAG	1 cut(s)	345
BstF5I	GGATG	3 cut(s)	73, 172, 426
BstFNI	CGCG	1 cut(s)	83
BstMWI	GCNNNNNNNGC	3 cut(s)	17, 40, 134
BstNI	CCWGG	1 cut(s)	447
BstNSI	RCATGY	2 cut(s)	64, 217
BstSCI	CCNGG	1 cut(s)	445
BstSLI	GKGCMC	1 cut(s)	213
BstUI	CGCG	1 cut(s)	83
BstV1I	GCAGC	3 cut(s)	18, 458, 472
BsuI	GTATCC	1 cut(s)	346
BsuRI	GGCC	3 cut(s)	43, 310, 488
BtsCI	GGATG	3 cut(s)	73, 172, 426
Cac8I	GCNNGC	2 cut(s)	18, 22
Cfr10I	RCCGGY	3 cut(s)	300, 319, 484
Cfr13I	GGNCC	4 cut(s)	41, 309, 331, 442
Csp6I	GTAC	3 cut(s)	58, 238, 295
CspAI	ACCGGT	1 cut(s)	300
CviAII	CATG	4 cut(s)	12, 61, 91, 214
CviJI	RGCY	7 cut(s)	8, 16, 31, 43, 310, 323, 488
CviKI_1	RGCY	7 cut(s)	8, 16, 31, 43, 310, 323, 488
CviQI	GTAC	3 cut(s)	58, 238, 295
DdeI	CTNAG	1 cut(s)	345
EaeI	YGGCCR	1 cut(s)	486
Eam1104I	CTCTTC	2 cut(s)	92, 375
EarI	CTCTTC	2 cut(s)	92, 375
EciI	GGCGGA	1 cut(s)	365
Eco47I	GGWCC	2 cut(s)	331, 442
Eco57I	CTGAAG	1 cut(s)	176
EcoO109I	RGGNCCY	1 cut(s)	442
EcoRII	CCWGG	1 cut(s)	445
FaeI	CATG	4 cut(s)	15, 64, 94, 217
FaiI	YATR	8 cut(s)	13, 62, 92, 173, 215, 271, 273, 434
FaqI	GGGAC	1 cut(s)	455
FatI	CATG	4 cut(s)	11, 60, 90, 213
FblI	GTMKAC	1 cut(s)	360
Fnu4HI	GCNGC	5 cut(s)	9, 32, 461, 464, 472
FokI	GGATG	3 cut(s)	80, 179, 433
Fsp4HI	GCNGC	5 cut(s)	9, 32, 461, 464, 472
FspBI	CTAG	2 cut(s)	38, 526
GluI	GCNGC	5 cut(s)	9, 32, 461, 464, 472
HaeIII	GGCC	3 cut(s)	43, 310, 488
HapII	CCGG	4 cut(s)	44, 301, 320, 485
Hin1II	CATG	4 cut(s)	15, 64, 94, 217
HincII	GTYRAC	1 cut(s)	361
HindII	GTYRAC	1 cut(s)	361
HinfI	GANTC	3 cut(s)	74, 130, 436
HpaII	CCGG	4 cut(s)	44, 301, 320, 485
HphI	GGTGA	1 cut(s)	205
Hpy166II	GTNNAC	2 cut(s)	211, 361
Hpy188I	TCNGA	3 cut(s)	120, 282, 400
Hpy188III	TCNNGA	2 cut(s)	256, 440
Hpy8I	GTNNAC	2 cut(s)	211, 361
HpyAV	CCTTC	1 cut(s)	444
HpyCH4III	ACNGT	1 cut(s)	358
HpyCH4V	TGCA	3 cut(s)	11, 211, 429
HpyF10VI	GCNNNNNNNGC	3 cut(s)	17, 40, 134
HpyF3I	CTNAG	1 cut(s)	345
Hsp92II	CATG	4 cut(s)	15, 64, 94, 217
KflI	GGGWCCC	1 cut(s)	442
KpnI	GGTACC	1 cut(s)	241
LguI	GCTCTTC	1 cut(s)	92
LmnI	GCTCC	1 cut(s)	87
Lsp1109I	GCAGC	3 cut(s)	18, 458, 472
LweI	GCATC	1 cut(s)	58
MaeI	CTAG	2 cut(s)	38, 526
MaeIII	GTNAC	2 cut(s)	150, 193
MboII	GAAGA	3 cut(s)	109, 392, 524
MhlI	GDGCHC	1 cut(s)	213
MluCI	AATT	1 cut(s)	109
MluI	ACGCGT	1 cut(s)	81
MlyI	GAGTC	1 cut(s)	68
MmeI	TCCRAC	2 cut(s)	45, 144
MnlI	CCTC	6 cut(s)	40, 87, 171, 177, 344, 403
MslI	CAYNNNNRTG	1 cut(s)	82
MspA1I	CMGCKG	1 cut(s)	463
MspI	CCGG	4 cut(s)	44, 301, 320, 485
MspR9I	CCNGG	1 cut(s)	447
MvaI	CCWGG	1 cut(s)	447
MvnI	CGCG	1 cut(s)	83
MwoI	GCNNNNNNNGC	3 cut(s)	17, 40, 134
NlaIII	CATG	4 cut(s)	15, 64, 94, 217
NlaIV	GGNNCC	4 cut(s)	239, 443, 444, 480
NmuCI	GTSAC	1 cut(s)	193
NspI	RCATGY	2 cut(s)	64, 217
OliI	CACNNNNGTG	1 cut(s)	82
PciI	ACATGT	2 cut(s)	60, 213
PciSI	GCTCTTC	1 cut(s)	92
PfeI	GAWTC	2 cut(s)	130, 436
PinAI	ACCGGT	1 cut(s)	300
PkrI	GCNGC	5 cut(s)	10, 33, 462, 465, 473
PleI	GAGTC	1 cut(s)	68
PpsI	GAGTC	1 cut(s)	68
PpuMI	RGGWCCY	1 cut(s)	442
PscI	ACATGT	2 cut(s)	60, 213
Psp5II	RGGWCCY	1 cut(s)	442
Psp6I	CCWGG	1 cut(s)	445
PspGI	CCWGG	1 cut(s)	445
PspN4I	GGNNCC	4 cut(s)	239, 443, 444, 480
PspPI	GGNCC	4 cut(s)	41, 309, 331, 442
PspPPI	RGGWCCY	1 cut(s)	442
PsrI	GAACNNNNNNTAC	2 cut(s)	287, 319
RsaI	GTAC	3 cut(s)	59, 239, 296
RsaNI	GTAC	3 cut(s)	58, 238, 295
RseI	CAYNNNNRTG	1 cut(s)	82
SalI	GTCGAC	1 cut(s)	359
SapI	GCTCTTC	1 cut(s)	92
SatI	GCNGC	5 cut(s)	9, 32, 461, 464, 472
Sau96I	GGNCC	4 cut(s)	41, 309, 331, 442
SchI	GAGTC	1 cut(s)	68
ScrFI	CCNGG	1 cut(s)	447
SduI	GDGCHC	1 cut(s)	213
SetI	ASST	6 cut(s)	33, 51, 182, 243, 336, 508
SfaNI	GCATC	1 cut(s)	58
SinI	GGWCC	2 cut(s)	331, 442
SmiMI	CAYNNNNRTG	1 cut(s)	82
Sse9I	AATT	1 cut(s)	109
SsiI	CCGC	5 cut(s)	55, 200, 350, 463, 466
SspMI	CTAG	2 cut(s)	38, 526
StyD4I	CCNGG	1 cut(s)	445
TaaI	ACNGT	1 cut(s)	358
TaqI	TCGA	2 cut(s)	360, 387
TasI	AATT	1 cut(s)	109
TauI	GCSGC	1 cut(s)	466
TfiI	GAWTC	2 cut(s)	130, 436
TseFI	GTSAC	1 cut(s)	193
TseI	GCWGC	4 cut(s)	8, 31, 460, 471
Tsp45I	GTSAC	1 cut(s)	193
TspDTI	ATGAA	4 cut(s)	384, 393, 437, 449
TspGWI	ACGGA	1 cut(s)	190
VneI	GTGCAC	1 cut(s)	209
VpaK11BI	GGWCC	2 cut(s)	331, 442
XceI	RCATGY	2 cut(s)	64, 217
XcmI	CCANNNNNNNNNTGG	1 cut(s)	496
XmiI	GTMKAC	1 cut(s)	360
XspI	CTAG	2 cut(s)	38, 526

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.