Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007734.1

Orthogroup ID

OG0007532

Physical Location & Seq

Genomic Coordinates Reverse (-)

22839 .. 30037

Gene Structure 7199 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0007734.1_g000006.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 990 bp

atgggcctcccggcgctgttgggtctaaagaaagctcctccggtgggtcctggttgggagggtgggttgggaaaggcaaagagcctgagaatttggggtaggcgggttgggagtggagctcagtggaggcaggttggttggaaattggatcggagttggggaagtggggcatcctatcaacgatctagcctgaccagaaaatgggtcgtcgtcgatatggataaactcgaggtcgggagtaaacttctcggccttggttcgccgatttcctgccaagactcgacgagctaccaccgcaggcgtgtccaggaggaggagaggaagccaaggtggtcgcagttcgctcccaggtggccggaatcgaaagagttcggcttctcttcaggcaatgctattccatcaaattttcagcaagatagagatgaattacgtgaagattatcatgaaaactttccctcagctcttgataagcctcatgcagtactttccaaagaggctttggcaaagaaacaagccgccaaaactggagaggccattgaaatattgtcaacagaaaagagctacattggtggttccgaatgcttcaaaattattcttccattctacattatggagttgaaagtgtatgtaactgctatggtgtatcaatggccggaggtggttcggtacatgttggatgctgactcgcacacgtggagcatgaggaagagcaaatcgaattggtttcagatagtggcgatgctggcgtggttggttgggtttgcaaagtggttggatgatatacggaggtggaggaactcagtgacgacggttttggtgcacatgttgtatttggttctggtttggttcccggatttgataatcccaactgggtttctgtatgtgtttctgattggagtttggtctggtgttgaccatggtggatttgtgggtggctgtgggtggaatgttgagaccggtggtgtgggagaagggaggcgtttgggatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005509 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005783 GO:0005829 GO:0005886 GO:0005911 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0009506 GO:0009987 GO:0012505 GO:0016020 GO:0016021 GO:0019722 GO:0019932 GO:0023052 GO:0030054 GO:0031224 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0035556 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044425 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0046872 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055044 GO:0065007 GO:0070013 GO:0071944 GO:0099402

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

C2 PRT_C

Protein Analysis

329

Amino Acids

37.22

Weight (kDa)

9.44

Isoelectric Point (pI)

45.75

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007532)

Species	Orthologous Gene IDs
malus_domestica	MD03G1049300.v1.1
rosa_chinensis	RchiOBHm_Chr2g0107641 RchiOBHm_Chr2g0171191 RchiOBHm_Chr7g0217211
rosa_laevigata	RLG00000016544 RLG00000018440 RLG00000018516
rosa_multiflora	Rmu_sc0000070.1_g000056 Rmu_sc0000147.1_g000002 Rmu_sc0001149.1_g000002 Rmu_sc0001513.1_g000002 Rmu_sc0004372.1_g000001 Rmu_sc0005690.1_g000022 Rmu_sc0007586.1_g000003 Rmu_sc0007734.1_g000006 Rmu_sc0010274.1_g000012
rosa_roxburghii	Rroxscaffold_3G00257030
rosa_samantha	Rh2BG208200 Rh2CG200900 Rh2CG606400 Rh2DG654500 Rh2DG654600 Rh7AG279600 Rh7AG306200 Rh7CG325300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	121
AccB7I	CCANNNNNTGG	1 cut(s)	201
AciI	CCGC	3 cut(s)	103, 295, 516
AclWI	GGATC	1 cut(s)	156
AcoI	YGGCCR	2 cut(s)	353, 650
AcsI	RAATTY	2 cut(s)	90, 403
AcuI	CTGAAG	1 cut(s)	366
AcvI	CACGTG	1 cut(s)	693
AfaI	GTAC	2 cut(s)	483, 668
AfiI	CCNNNNNNNGG	3 cut(s)	44, 201, 313
AflIII	ACRYGT	3 cut(s)	669, 690, 822
AgeI	ACCGGT	1 cut(s)	956
AgsI	TTSAA	3 cut(s)	539, 586, 619
AjnI	CCWGG	3 cut(s)	49, 306, 347
AluBI	AGCT	5 cut(s)	35, 119, 288, 461, 561
AluI	AGCT	5 cut(s)	35, 119, 288, 461, 561
Alw21I	GWGCWC	2 cut(s)	121, 822
Alw26I	GTCTC	1 cut(s)	947
Alw44I	GTGCAC	1 cut(s)	818
AlwI	GGATC	1 cut(s)	156
Ama87I	CYCGRG	1 cut(s)	227
AoxI	GGCC	5 cut(s)	4, 250, 353, 531, 650
ApaLI	GTGCAC	1 cut(s)	818
ApoI	RAATTY	2 cut(s)	90, 403
ArsI	GACNNNNNNTTYG	2 cut(s)	796, 828
AsiGI	ACCGGT	1 cut(s)	956
Asp700I	GAANNNNTTC	2 cut(s)	368, 450
AspLEI	GCGC	1 cut(s)	16
AspS9I	GGNCC	2 cut(s)	4, 47
AsuC2I	CCSGG	2 cut(s)	11, 851
AvaI	CYCGRG	1 cut(s)	227
AvaII	GGWCC	1 cut(s)	47
BaeGI	GKGCMC	1 cut(s)	822
BanII	GRGCYC	1 cut(s)	121
BbrPI	CACGTG	1 cut(s)	693
Bbv12I	GWGCWC	2 cut(s)	121, 822
BbvCI	CCTCAGC	1 cut(s)	457
BccI	CCATC	1 cut(s)	406
BciT130I	CCWGG	3 cut(s)	51, 308, 349
BcnI	CCSGG	2 cut(s)	11, 851
BcoDI	GTCTC	1 cut(s)	947
BfaI	CTAG	1 cut(s)	186
BfoI	RGCGCY	1 cut(s)	17
BfuAI	ACCTGC	1 cut(s)	121
BisI	GCNGC	1 cut(s)	516
BlsI	GCNGC	1 cut(s)	517
BmcAI	AGTACT	1 cut(s)	483
Bme1390I	CCNGG	5 cut(s)	11, 51, 308, 349, 851
Bme18I	GGWCC	1 cut(s)	47
BmeT110I	CYCGRG	1 cut(s)	227
BmgT120I	GGNCC	2 cut(s)	4, 47
BmiI	GGNNCC	3 cut(s)	48, 574, 848
BmrFI	CCNGG	5 cut(s)	11, 51, 308, 349, 851
BmrI	ACTGGG	1 cut(s)	879
BmsI	GCATC	3 cut(s)	179, 667, 729
BmuI	ACTGGG	1 cut(s)	879
BplI	GAGNNNNNCTC	2 cut(s)	103, 135
BpmI	CTGGAG	1 cut(s)	546
Bpu10I	CCTNAGC	1 cut(s)	457
BpuMI	CCSGG	2 cut(s)	11, 851
BsaAI	YACGTR	2 cut(s)	431, 693
BsaI	GGTCTC	1 cut(s)	947
BsaJI	CCNNGG	4 cut(s)	253, 326, 347, 916
BsaWI	WCCGGW	2 cut(s)	40, 956
BsaXI	ACNNNNNCTCC	2 cut(s)	50, 80
Bsc4I	CCNNNNNNNGG	3 cut(s)	44, 201, 313
Bse118I	RCCGGY	1 cut(s)	956
Bse1I	ACTGG	2 cut(s)	529, 874
Bse3DI	GCAATG	1 cut(s)	394
BseBI	CCWGG	3 cut(s)	51, 308, 349
BseDI	CCNNGG	4 cut(s)	253, 326, 347, 916
BseGI	GGATG	3 cut(s)	170, 682, 781
BseLI	CCNNNNNNNGG	3 cut(s)	44, 201, 313
BseMI	GCAATG	1 cut(s)	394
BseMII	CTCAG	4 cut(s)	77, 134, 471, 813
BseNI	ACTGG	2 cut(s)	529, 874
BseRI	GAGGAG	3 cut(s)	27, 326, 329
BseSI	GKGCMC	1 cut(s)	822
BshFI	GGCC	5 cut(s)	6, 252, 355, 533, 652
BshTI	ACCGGT	1 cut(s)	956
BsiHKAI	GWGCWC	2 cut(s)	121, 822
BsiHKCI	CYCGRG	1 cut(s)	227
BsiSI	CCGG	6 cut(s)	11, 41, 356, 653, 851, 957
BslI	CCNNNNNNNGG	3 cut(s)	44, 201, 313
BsmAI	GTCTC	1 cut(s)	947
BsmI	GAATGC	1 cut(s)	584
BsnI	GGCC	5 cut(s)	6, 252, 355, 533, 652
Bso31I	GGTCTC	1 cut(s)	947
BsoBI	CYCGRG	1 cut(s)	227
Bsp1286I	GDGCHC	2 cut(s)	121, 822
Bsp143I	GATC	2 cut(s)	148, 182
Bsp19I	CCATGG	1 cut(s)	916
BspACI	CCGC	3 cut(s)	103, 295, 516
BspANI	GGCC	5 cut(s)	6, 252, 355, 533, 652
BspCNI	CTCAG	4 cut(s)	78, 133, 470, 812
BspHI	TCATGA	1 cut(s)	442
BspLI	GGNNCC	3 cut(s)	48, 574, 848
BspMI	ACCTGC	1 cut(s)	121
BspPI	GGATC	1 cut(s)	156
BspQI	GCTCTTC	1 cut(s)	701
BspTNI	GGTCTC	1 cut(s)	947
BsrDI	GCAATG	1 cut(s)	394
BsrFI	RCCGGY	1 cut(s)	956
BsrI	ACTGG	2 cut(s)	529, 874
BssAI	RCCGGY	1 cut(s)	956
BssECI	CCNNGG	4 cut(s)	253, 326, 347, 916
BssMI	GATC	2 cut(s)	148, 182
BssT1I	CCWWGG	3 cut(s)	253, 326, 916
Bst2UI	CCWGG	3 cut(s)	51, 308, 349
Bst4CI	ACNGT	1 cut(s)	811
Bst6I	CTCTTC	2 cut(s)	385, 701
BstBAI	YACGTR	2 cut(s)	431, 693
BstC8I	GCNNGC	2 cut(s)	299, 744
BstDEI	CTNAG	4 cut(s)	86, 120, 457, 799
BstDSI	CCRYGG	1 cut(s)	916
BstF5I	GGATG	3 cut(s)	170, 682, 781
BstH2I	RGCGCY	1 cut(s)	17
BstHHI	GCGC	1 cut(s)	16
BstKTI	GATC	2 cut(s)	151, 185
BstMAI	GTCTC	1 cut(s)	947
BstMBI	GATC	2 cut(s)	148, 182
BstMWI	GCNNNNNNNGC	2 cut(s)	294, 743
BstNI	CCWGG	3 cut(s)	51, 308, 349
BstNSI	RCATGY	2 cut(s)	673, 826
BstSCI	CCNGG	5 cut(s)	9, 49, 306, 347, 849
BstSLI	GKGCMC	1 cut(s)	822
BsuRI	GGCC	5 cut(s)	6, 252, 355, 533, 652
BtgI	CCRYGG	1 cut(s)	916
BtgZI	GCGATG	1 cut(s)	752
BtsCI	GGATG	3 cut(s)	170, 682, 781
BtsIMutI	CAGTG	2 cut(s)	128, 807
BveI	ACCTGC	1 cut(s)	121
Cac8I	GCNNGC	2 cut(s)	299, 744
CciI	TCATGA	1 cut(s)	442
CfoI	GCGC	1 cut(s)	16
Cfr10I	RCCGGY	1 cut(s)	956
Cfr13I	GGNCC	2 cut(s)	4, 47
Csp6I	GTAC	2 cut(s)	482, 667
CspAI	ACCGGT	1 cut(s)	956
CviAII	CATG	6 cut(s)	443, 476, 670, 700, 823, 917
CviQI	GTAC	2 cut(s)	482, 667
DdeI	CTNAG	4 cut(s)	86, 120, 457, 799
DpnI	GATC	2 cut(s)	150, 184
DpnII	GATC	2 cut(s)	148, 182
EaeI	YGGCCR	2 cut(s)	353, 650
Eam1104I	CTCTTC	2 cut(s)	385, 701
EarI	CTCTTC	2 cut(s)	385, 701
Ecl136II	GAGCTC	1 cut(s)	119
Eco130I	CCWWGG	3 cut(s)	253, 326, 916
Eco24I	GRGCYC	1 cut(s)	121
Eco31I	GGTCTC	1 cut(s)	947
Eco47I	GGWCC	1 cut(s)	47
Eco53kI	GAGCTC	1 cut(s)	119
Eco57I	CTGAAG	1 cut(s)	366
Eco72I	CACGTG	1 cut(s)	693
Eco88I	CYCGRG	1 cut(s)	227
EcoICRI	GAGCTC	1 cut(s)	119
EcoO109I	RGGNCCY	1 cut(s)	47
EcoRII	CCWGG	3 cut(s)	49, 306, 347
EcoT14I	CCWWGG	3 cut(s)	253, 326, 916
EcoT38I	GRGCYC	1 cut(s)	121
ErhI	CCWWGG	3 cut(s)	253, 326, 916
FaeI	CATG	6 cut(s)	446, 479, 673, 703, 826, 920
FatI	CATG	6 cut(s)	442, 475, 669, 699, 822, 916
FauI	CCCGC	1 cut(s)	96
Fnu4HI	GCNGC	1 cut(s)	516
FokI	GGATG	3 cut(s)	157, 689, 788
FriOI	GRGCYC	1 cut(s)	121
Fsp4HI	GCNGC	1 cut(s)	516
FspBI	CTAG	1 cut(s)	186
GlaI	GCGC	1 cut(s)	15
GluI	GCNGC	1 cut(s)	516
GsuI	CTGGAG	1 cut(s)	546
HaeII	RGCGCY	1 cut(s)	17
HaeIII	GGCC	5 cut(s)	6, 252, 355, 533, 652
HapII	CCGG	6 cut(s)	11, 41, 356, 653, 851, 957
HhaI	GCGC	1 cut(s)	16
Hin1II	CATG	6 cut(s)	446, 479, 673, 703, 826, 920
Hin6I	GCGC	1 cut(s)	14
HinP1I	GCGC	1 cut(s)	14
HincII	GTYRAC	2 cut(s)	549, 913
HindII	GTYRAC	2 cut(s)	549, 913
HinfI	GANTC	3 cut(s)	278, 359, 683
HpaII	CCGG	6 cut(s)	11, 41, 356, 653, 851, 957
Hpy166II	GTNNAC	4 cut(s)	242, 549, 820, 913
Hpy188I	TCNGA	4 cut(s)	153, 577, 729, 891
Hpy188III	TCNNGA	3 cut(s)	235, 443, 464
Hpy8I	GTNNAC	4 cut(s)	242, 549, 820, 913
Hpy99I	CGWCG	4 cut(s)	212, 215, 286, 811
HpyAV	CCTTC	1 cut(s)	965
HpyCH4III	ACNGT	1 cut(s)	811
HpyCH4IV	ACGT	2 cut(s)	430, 692
HpyCH4V	TGCA	3 cut(s)	479, 764, 820
HpyF10VI	GCNNNNNNNGC	2 cut(s)	294, 743
HpyF3I	CTNAG	4 cut(s)	86, 120, 457, 799
HpySE526I	ACGT	2 cut(s)	430, 692
Hsp92II	CATG	6 cut(s)	446, 479, 673, 703, 826, 920
HspAI	GCGC	1 cut(s)	14
Kzo9I	GATC	2 cut(s)	148, 182
LguI	GCTCTTC	1 cut(s)	701
LmnI	GCTCC	4 cut(s)	40, 116, 349, 696
LweI	GCATC	3 cut(s)	179, 667, 729
MaeI	CTAG	1 cut(s)	186
MaeII	ACGT	2 cut(s)	430, 692
MaeIII	GTNAC	2 cut(s)	628, 802
MalI	GATC	2 cut(s)	150, 184
MboI	GATC	2 cut(s)	148, 182
MboII	GAAGA	4 cut(s)	372, 446, 587, 718
MhlI	GDGCHC	2 cut(s)	121, 822
MluCI	AATT	6 cut(s)	90, 143, 403, 425, 588, 718
MlyI	GAGTC	2 cut(s)	272, 677
MmeI	TCCRAC	3 cut(s)	119, 654, 753
MroXI	GAANNNNTTC	2 cut(s)	368, 450
MspI	CCGG	6 cut(s)	11, 41, 356, 653, 851, 957
MspR9I	CCNGG	5 cut(s)	11, 51, 308, 349, 851
Mva1269I	GAATGC	1 cut(s)	584
MvaI	CCWGG	3 cut(s)	51, 308, 349
MwoI	GCNNNNNNNGC	2 cut(s)	294, 743
NciI	CCSGG	2 cut(s)	11, 851
NcoI	CCATGG	1 cut(s)	916
NdeII	GATC	2 cut(s)	148, 182
NlaIII	CATG	6 cut(s)	446, 479, 673, 703, 826, 920
NlaIV	GGNNCC	3 cut(s)	48, 574, 848
NmeAIII	GCCGAG	1 cut(s)	228
NmuCI	GTSAC	1 cut(s)	802
NspI	RCATGY	2 cut(s)	673, 826
PaeR7I	CTCGAG	1 cut(s)	227
PagI	TCATGA	1 cut(s)	442
PciI	ACATGT	2 cut(s)	669, 822
PciSI	GCTCTTC	1 cut(s)	701
PctI	GAATGC	1 cut(s)	584
PdmI	GAANNNNTTC	2 cut(s)	368, 450
PfeI	GAWTC	1 cut(s)	359
PflMI	CCANNNNNTGG	1 cut(s)	201
PfoI	TCCNGGA	2 cut(s)	306, 849
PinAI	ACCGGT	1 cut(s)	956
PkrI	GCNGC	1 cut(s)	517
PleI	GAGTC	2 cut(s)	272, 677
PmaCI	CACGTG	1 cut(s)	693
PmlI	CACGTG	1 cut(s)	693
PpsI	GAGTC	2 cut(s)	272, 677
Ppu21I	YACGTR	2 cut(s)	431, 693
PpuMI	RGGWCCY	1 cut(s)	47
PscI	ACATGT	2 cut(s)	669, 822
Psp124BI	GAGCTC	1 cut(s)	121
Psp5II	RGGWCCY	1 cut(s)	47
Psp6I	CCWGG	3 cut(s)	49, 306, 347
PspCI	CACGTG	1 cut(s)	693
PspGI	CCWGG	3 cut(s)	49, 306, 347
PspN4I	GGNNCC	3 cut(s)	48, 574, 848
PspPI	GGNCC	2 cut(s)	4, 47
PspPPI	RGGWCCY	1 cut(s)	47
PspXI	VCTCGAGB	1 cut(s)	227
RsaI	GTAC	2 cut(s)	483, 668
RsaNI	GTAC	2 cut(s)	482, 667
SacI	GAGCTC	1 cut(s)	121
SapI	GCTCTTC	1 cut(s)	701
SatI	GCNGC	1 cut(s)	516
Sau3AI	GATC	2 cut(s)	148, 182
Sau96I	GGNCC	2 cut(s)	4, 47
ScaI	AGTACT	1 cut(s)	483
SchI	GAGTC	2 cut(s)	272, 677
ScrFI	CCNGG	5 cut(s)	11, 51, 308, 349, 851
SduI	GDGCHC	2 cut(s)	121, 822
SfaNI	GCATC	3 cut(s)	179, 667, 729
Sfr274I	CTCGAG	1 cut(s)	227
SinI	GGWCC	1 cut(s)	47
SlaI	CTCGAG	1 cut(s)	227
SmlI	CTYRAG	1 cut(s)	227
SmoI	CTYRAG	1 cut(s)	227
Sse9I	AATT	6 cut(s)	90, 143, 403, 425, 588, 718
SsiI	CCGC	3 cut(s)	103, 295, 516
SspI	AATATT	1 cut(s)	543
SspMI	CTAG	1 cut(s)	186
SstI	GAGCTC	1 cut(s)	121
StyD4I	CCNGG	5 cut(s)	9, 49, 306, 347, 849
StyI	CCWWGG	3 cut(s)	253, 326, 916
TaaI	ACNGT	1 cut(s)	811
TaiI	ACGT	2 cut(s)	433, 695
TaqI	TCGA	5 cut(s)	213, 228, 281, 362, 716
TasI	AATT	6 cut(s)	90, 143, 403, 425, 588, 718
TatI	WGTACW	1 cut(s)	481
TauI	GCSGC	1 cut(s)	518
TfiI	GAWTC	1 cut(s)	359
TscAI	CASTG	2 cut(s)	128, 807
TseFI	GTSAC	1 cut(s)	802
Tsp45I	GTSAC	1 cut(s)	802
TspDTI	ATGAA	2 cut(s)	438, 459
TspGWI	ACGGA	1 cut(s)	799
TspRI	CASTG	2 cut(s)	128, 807
Van91I	CCANNNNNTGG	1 cut(s)	201
VneI	GTGCAC	1 cut(s)	818
VpaK11BI	GGWCC	1 cut(s)	47
XapI	RAATTY	2 cut(s)	90, 403
XceI	RCATGY	2 cut(s)	673, 826
XcmI	CCANNNNNNNNNTGG	1 cut(s)	496
XhoI	CTCGAG	1 cut(s)	227
XmnI	GAANNNNTTC	2 cut(s)	368, 450
XspI	CTAG	1 cut(s)	186
ZrmI	AGTACT	1 cut(s)	483

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.