Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007586.1

Orthogroup ID

OG0007532

Physical Location & Seq

Genomic Coordinates Forward (+)

21898 .. 22308

Gene Structure 411 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0007586.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 282 bp

atggtggcagcatggctagcacactccgagccgccgctagggttggaggtggtgcggtacatgttggatgctgactcacacaggtggagcatgaggaagagcaaagccaattggtttcagatcgtggcgatgctggcgtggtttgtcgagttagcgaagtggttggatgatatacagaggcccaagataccggctggaatggacctctggctctcccatgtggatacaattgacccggatgaacttgataaggagttcgacactttctcggagctgctgtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005509 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005783 GO:0005829 GO:0005886 GO:0005911 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0009506 GO:0009987 GO:0012505 GO:0016020 GO:0016021 GO:0019722 GO:0019932 GO:0023052 GO:0030054 GO:0031224 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0035556 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044425 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0046872 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055044 GO:0065007 GO:0070013 GO:0071944 GO:0099402

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

C2 PRT_C

Protein Analysis

93

Amino Acids

10.89

Weight (kDa)

4.69

Isoelectric Point (pI)

31.18

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007532)

Species	Orthologous Gene IDs
malus_domestica	MD03G1049300.v1.1
rosa_chinensis	RchiOBHm_Chr2g0107641 RchiOBHm_Chr2g0171191 RchiOBHm_Chr7g0217211
rosa_laevigata	RLG00000016544 RLG00000018440 RLG00000018516
rosa_multiflora	Rmu_sc0000070.1_g000056 Rmu_sc0000147.1_g000002 Rmu_sc0001149.1_g000002 Rmu_sc0001513.1_g000002 Rmu_sc0004372.1_g000001 Rmu_sc0005690.1_g000022 Rmu_sc0007586.1_g000003 Rmu_sc0007734.1_g000006 Rmu_sc0010274.1_g000012
rosa_roxburghii	Rroxscaffold_3G00257030
rosa_samantha	Rh2BG208200 Rh2CG200900 Rh2CG606400 Rh2DG654500 Rh2DG654600 Rh7AG279600 Rh7AG306200 Rh7CG325300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	32, 35, 55
AfaI	GTAC	1 cut(s)	59
AfiI	CCNNNNNNNGG	1 cut(s)	38
AflIII	ACRYGT	1 cut(s)	60
AleI	CACNNNNGTG	1 cut(s)	82
AluBI	AGCT	1 cut(s)	274
AluI	AGCT	1 cut(s)	274
AoxI	GGCC	1 cut(s)	179
ApeKI	GCWGC	2 cut(s)	8, 274
AspS9I	GGNCC	2 cut(s)	180, 202
AsuC2I	CCSGG	1 cut(s)	236
AsuNHI	GCTAGC	1 cut(s)	16
AvaII	GGWCC	1 cut(s)	202
BbvI	GCAGC	2 cut(s)	20, 261
BciVI	GTATCC	1 cut(s)	217
BcnI	CCSGG	1 cut(s)	236
BfaI	CTAG	2 cut(s)	17, 38
BfmI	CTRYAG	1 cut(s)	278
BfuI	GTATCC	1 cut(s)	217
BisI	GCNGC	4 cut(s)	9, 32, 35, 275
BlsI	GCNGC	4 cut(s)	10, 33, 36, 276
Bme1390I	CCNGG	1 cut(s)	236
Bme18I	GGWCC	1 cut(s)	202
BmgT120I	GGNCC	2 cut(s)	180, 202
BmrFI	CCNGG	1 cut(s)	236
BmsI	GCATC	2 cut(s)	58, 120
BmtI	GCTAGC	1 cut(s)	20
BpuMI	CCSGG	1 cut(s)	236
BsaXI	ACNNNNNCTCC	1 cut(s)	263
Bsc4I	CCNNNNNNNGG	1 cut(s)	38
Bse118I	RCCGGY	1 cut(s)	190
BseGI	GGATG	3 cut(s)	73, 172, 244
BseLI	CCNNNNNNNGG	1 cut(s)	38
BseXI	GCAGC	2 cut(s)	20, 261
BshFI	GGCC	1 cut(s)	181
BsiSI	CCGG	2 cut(s)	191, 236
BslI	CCNNNNNNNGG	1 cut(s)	38
BsnI	GGCC	1 cut(s)	181
Bsp143I	GATC	1 cut(s)	120
BspACI	CCGC	3 cut(s)	32, 35, 55
BspANI	GGCC	1 cut(s)	181
BspOI	GCTAGC	1 cut(s)	20
BspQI	GCTCTTC	1 cut(s)	92
BsrFI	RCCGGY	1 cut(s)	190
BssAI	RCCGGY	1 cut(s)	190
BssMI	GATC	1 cut(s)	120
Bst6I	CTCTTC	1 cut(s)	92
BstC8I	GCNNGC	2 cut(s)	18, 135
BstF5I	GGATG	3 cut(s)	73, 172, 244
BstKTI	GATC	1 cut(s)	123
BstMBI	GATC	1 cut(s)	120
BstMWI	GCNNNNNNNGC	2 cut(s)	17, 134
BstNSI	RCATGY	1 cut(s)	64
BstSCI	CCNGG	1 cut(s)	234
BstSFI	CTRYAG	1 cut(s)	278
BstV1I	GCAGC	2 cut(s)	20, 261
BsuI	GTATCC	1 cut(s)	217
BsuRI	GGCC	1 cut(s)	181
BtgZI	GCGATG	1 cut(s)	143
BtsCI	GGATG	3 cut(s)	73, 172, 244
Cac8I	GCNNGC	2 cut(s)	18, 135
Cfr10I	RCCGGY	1 cut(s)	190
Cfr13I	GGNCC	2 cut(s)	180, 202
Csp6I	GTAC	1 cut(s)	58
CviAII	CATG	4 cut(s)	12, 61, 91, 218
CviJI	RGCY	7 cut(s)	16, 31, 107, 181, 194, 211, 274
CviKI_1	RGCY	7 cut(s)	16, 31, 107, 181, 194, 211, 274
CviQI	GTAC	1 cut(s)	58
DpnI	GATC	1 cut(s)	122
DpnII	GATC	1 cut(s)	120
Eam1104I	CTCTTC	1 cut(s)	92
EarI	CTCTTC	1 cut(s)	92
Eco47I	GGWCC	1 cut(s)	202
FaeI	CATG	4 cut(s)	15, 64, 94, 221
FaiI	YATR	5 cut(s)	13, 62, 92, 173, 219
FatI	CATG	4 cut(s)	11, 60, 90, 217
Fnu4HI	GCNGC	4 cut(s)	9, 32, 35, 275
FokI	GGATG	3 cut(s)	80, 179, 251
Fsp4HI	GCNGC	4 cut(s)	9, 32, 35, 275
FspBI	CTAG	2 cut(s)	17, 38
GluI	GCNGC	4 cut(s)	9, 32, 35, 275
HaeIII	GGCC	1 cut(s)	181
HapII	CCGG	2 cut(s)	191, 236
Hin1II	CATG	4 cut(s)	15, 64, 94, 221
HinfI	GANTC	1 cut(s)	74
HpaII	CCGG	2 cut(s)	191, 236
Hpy188I	TCNGA	3 cut(s)	28, 120, 271
HpyF10VI	GCNNNNNNNGC	2 cut(s)	17, 134
Hsp92II	CATG	4 cut(s)	15, 64, 94, 221
Kzo9I	GATC	1 cut(s)	120
LguI	GCTCTTC	1 cut(s)	92
LmnI	GCTCC	2 cut(s)	87, 271
LpnPI	CCDG	6 cut(s)	67, 119, 180, 193, 204, 249
Lsp1109I	GCAGC	2 cut(s)	20, 261
LweI	GCATC	2 cut(s)	58, 120
MaeI	CTAG	2 cut(s)	17, 38
MalI	GATC	1 cut(s)	122
MboI	GATC	1 cut(s)	120
MboII	GAAGA	1 cut(s)	109
MfeI	CAATTG	2 cut(s)	109, 228
MluCI	AATT	2 cut(s)	109, 228
MlyI	GAGTC	1 cut(s)	68
MmeI	TCCRAC	3 cut(s)	24, 45, 144
MnlI	CCTC	4 cut(s)	40, 87, 171, 215
MslI	CAYNNNNRTG	1 cut(s)	82
MspI	CCGG	2 cut(s)	191, 236
MspR9I	CCNGG	1 cut(s)	236
MunI	CAATTG	2 cut(s)	109, 228
MwoI	GCNNNNNNNGC	2 cut(s)	17, 134
NciI	CCSGG	1 cut(s)	236
NdeII	GATC	1 cut(s)	120
NheI	GCTAGC	1 cut(s)	16
NlaIII	CATG	4 cut(s)	15, 64, 94, 221
NspI	RCATGY	1 cut(s)	64
OliI	CACNNNNGTG	1 cut(s)	82
PciI	ACATGT	1 cut(s)	60
PciSI	GCTCTTC	1 cut(s)	92
PkrI	GCNGC	4 cut(s)	10, 33, 36, 276
PleI	GAGTC	1 cut(s)	68
PpsI	GAGTC	1 cut(s)	68
PscI	ACATGT	1 cut(s)	60
PspPI	GGNCC	2 cut(s)	180, 202
RsaI	GTAC	1 cut(s)	59
RsaNI	GTAC	1 cut(s)	58
RseI	CAYNNNNRTG	1 cut(s)	82
SapI	GCTCTTC	1 cut(s)	92
SatI	GCNGC	4 cut(s)	9, 32, 35, 275
Sau3AI	GATC	1 cut(s)	120
Sau96I	GGNCC	2 cut(s)	180, 202
SchI	GAGTC	1 cut(s)	68
ScrFI	CCNGG	1 cut(s)	236
SetI	ASST	4 cut(s)	51, 86, 207, 276
SfaNI	GCATC	2 cut(s)	58, 120
SfcI	CTRYAG	1 cut(s)	278
SinI	GGWCC	1 cut(s)	202
SmiMI	CAYNNNNRTG	1 cut(s)	82
Sse9I	AATT	2 cut(s)	109, 228
SsiI	CCGC	3 cut(s)	32, 35, 55
SspMI	CTAG	2 cut(s)	17, 38
StyD4I	CCNGG	1 cut(s)	234
TaqI	TCGA	2 cut(s)	147, 258
TasI	AATT	2 cut(s)	109, 228
TauI	GCSGC	2 cut(s)	34, 37
TseI	GCWGC	2 cut(s)	8, 274
TspDTI	ATGAA	1 cut(s)	255
VpaK11BI	GGWCC	1 cut(s)	202
XceI	RCATGY	1 cut(s)	64
XspI	CTAG	2 cut(s)	17, 38

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.