Rh2BG208200

Multiple C2 and transmembrane domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0007532
Physical Location & Seq
Forward (+)
19462184 .. 19462594
411 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG208200.1

Sequence Viewer

Length: 411 bp
ATGGTAGCCGCATGGCTCATACGCTCCAAGCCGTTGCTAGGGCCGGAGGTAGTGCAGTACATGTTGGATGCTGACTCGCACACGTGGAGCATGAGGAAGAGCAAAGCGAATTGGTTTCGGATAGTGGAAATGCTAGCGTGGTTGGTCGGGTTAGCGAAGTGGTTGGATGATATACGGAGGTGGAGGAACTCGGTGACGACGATTTTGGTGCACATGTTGTATTTGGTTCTGGTTTGGTACCCGGATTTGATGATCCTGATTGGGTTTCTATATGTGTTTCTTATTGGGGTTTGGTACTACCGGTTCAGGCCCAAGATACTGGCTGGAATGGACCTCTGGCTCTCCCAGGCGGATACGGTCGACCCGGATGAACTTGATGAGGAGTTCGACACTTTCTCGGAGCTGCCGTAG

Protein Analysis

136

Amino Acids

16.19

Weight (kDa)

5.05

Isoelectric Point (pI)

36.22

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PRT_C PF08372 89 - 132 2.6e-13 Plant phosphoribosyltransferase C-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 237
AccB1I GGYRCC 1 cut(s) 237
AccI GTMKAC 1 cut(s) 360
AciI CCGC 2 cut(s) 9, 350
AclWI GGATC 1 cut(s) 247
AcvI CACGTG 1 cut(s) 84
AfaI GTAC 3 cut(s) 59, 239, 296
AfiI CCNNNNNNNGG 1 cut(s) 38
AflIII ACRYGT 3 cut(s) 60, 81, 213
AgeI ACCGGT 1 cut(s) 300
AjnI CCWGG 1 cut(s) 345
AluBI AGCT 1 cut(s) 403
AluI AGCT 1 cut(s) 403
Alw21I GWGCWC 1 cut(s) 213
Alw44I GTGCAC 1 cut(s) 209
AlwI GGATC 1 cut(s) 247
AoxI GGCC 2 cut(s) 41, 308
ApaLI GTGCAC 1 cut(s) 209
ApeKI GCWGC 1 cut(s) 403
ArsI GACNNNNNNTTYG 2 cut(s) 187, 219
AsiGI ACCGGT 1 cut(s) 300
Asp718I GGTACC 1 cut(s) 237
AspS9I GGNCC 3 cut(s) 41, 309, 331
AsuC2I CCSGG 2 cut(s) 242, 365
AsuHPI GGTGA 1 cut(s) 205
AsuNHI GCTAGC 1 cut(s) 133
AvaII GGWCC 1 cut(s) 331
BaeGI GKGCMC 1 cut(s) 213
BanI GGYRCC 1 cut(s) 237
BbrPI CACGTG 1 cut(s) 84
Bbv12I GWGCWC 1 cut(s) 213
BbvI GCAGC 1 cut(s) 390
BceAI ACGGC 2 cut(s) 16, 391
BcgI CGANNNNNNTGC 2 cut(s) 190, 224
BciT130I CCWGG 1 cut(s) 347
BciVI GTATCC 1 cut(s) 346
BcnI CCSGG 2 cut(s) 242, 365
BfaI CTAG 2 cut(s) 38, 134
BfuI GTATCC 1 cut(s) 346
BisI GCNGC 2 cut(s) 9, 404
BlsI GCNGC 2 cut(s) 10, 405
Bme1390I CCNGG 3 cut(s) 242, 347, 365
Bme18I GGWCC 1 cut(s) 331
BmgT120I GGNCC 3 cut(s) 41, 309, 331
BmiI GGNNCC 1 cut(s) 239
BmrFI CCNGG 3 cut(s) 242, 347, 365
BmsI GCATC 1 cut(s) 58
BmtI GCTAGC 1 cut(s) 137
BpuMI CCSGG 2 cut(s) 242, 365
BsaAI YACGTR 1 cut(s) 84
BsaJI CCNNGG 1 cut(s) 345
BsaWI WCCGGW 1 cut(s) 300
BsaXI ACNNNNNCTCC 1 cut(s) 392
Bsc4I CCNNNNNNNGG 1 cut(s) 38
Bse118I RCCGGY 1 cut(s) 300
Bse1I ACTGG 1 cut(s) 324
BseBI CCWGG 1 cut(s) 347
BseDI CCNNGG 1 cut(s) 345
BseGI GGATG 3 cut(s) 73, 172, 373
BseLI CCNNNNNNNGG 1 cut(s) 38
BseNI ACTGG 1 cut(s) 324
BseRI GAGGAG 1 cut(s) 395
BseSI GKGCMC 1 cut(s) 213
BseXI GCAGC 1 cut(s) 390
BsgI GTGCAG 1 cut(s) 74
Bsh1285I CGRYCG 1 cut(s) 360
BshFI GGCC 2 cut(s) 43, 310
BshNI GGYRCC 1 cut(s) 237
BshTI ACCGGT 1 cut(s) 300
BsiEI CGRYCG 1 cut(s) 360
BsiHKAI GWGCWC 1 cut(s) 213
BsiSI CCGG 4 cut(s) 44, 242, 301, 365
BslI CCNNNNNNNGG 1 cut(s) 38
BsnI GGCC 2 cut(s) 43, 310
Bsp1286I GDGCHC 1 cut(s) 213
Bsp143I GATC 1 cut(s) 252
BspACI CCGC 2 cut(s) 9, 350
BspANI GGCC 2 cut(s) 43, 310
BspLI GGNNCC 1 cut(s) 239
BspOI GCTAGC 1 cut(s) 137
BspPI GGATC 1 cut(s) 247
BspQI GCTCTTC 1 cut(s) 92
BspT107I GGYRCC 1 cut(s) 237
BsrFI RCCGGY 1 cut(s) 300
BsrI ACTGG 1 cut(s) 324
BssAI RCCGGY 1 cut(s) 300
BssECI CCNNGG 1 cut(s) 345
BssMI GATC 1 cut(s) 252
Bst2UI CCWGG 1 cut(s) 347
Bst4CI ACNGT 1 cut(s) 358
Bst6I CTCTTC 1 cut(s) 92
BstBAI YACGTR 1 cut(s) 84
BstC8I GCNNGC 1 cut(s) 135
BstF5I GGATG 3 cut(s) 73, 172, 373
BstKTI GATC 1 cut(s) 255
BstMBI GATC 1 cut(s) 252
BstMCI CGRYCG 1 cut(s) 360
BstNI CCWGG 1 cut(s) 347
BstNSI RCATGY 2 cut(s) 64, 217
BstSCI CCNGG 3 cut(s) 240, 345, 363
BstSLI GKGCMC 1 cut(s) 213
BstV1I GCAGC 1 cut(s) 390
BstXI CCANNNNNNTGG 1 cut(s) 319
BsuI GTATCC 1 cut(s) 346
BsuRI GGCC 2 cut(s) 43, 310
BtsCI GGATG 3 cut(s) 73, 172, 373
Cac8I GCNNGC 1 cut(s) 135
Cfr10I RCCGGY 1 cut(s) 300
Cfr13I GGNCC 3 cut(s) 41, 309, 331
Csp6I GTAC 3 cut(s) 58, 238, 295
CspAI ACCGGT 1 cut(s) 300
CviAII CATG 4 cut(s) 12, 61, 91, 214
CviJI RGCY 8 cut(s) 8, 16, 31, 43, 310, 323, 340, 403
CviKI_1 RGCY 8 cut(s) 8, 16, 31, 43, 310, 323, 340, 403
CviQI GTAC 3 cut(s) 58, 238, 295
DpnI GATC 1 cut(s) 254
DpnII GATC 1 cut(s) 252
Eam1104I CTCTTC 1 cut(s) 92
EarI CTCTTC 1 cut(s) 92
EciI GGCGGA 1 cut(s) 365
Eco47I GGWCC 1 cut(s) 331
Eco72I CACGTG 1 cut(s) 84
EcoRII CCWGG 1 cut(s) 345
FaeI CATG 4 cut(s) 15, 64, 94, 217
FaiI YATR 8 cut(s) 13, 20, 62, 92, 173, 215, 271, 273
FatI CATG 4 cut(s) 11, 60, 90, 213
FblI GTMKAC 1 cut(s) 360
Fnu4HI GCNGC 2 cut(s) 9, 404
FokI GGATG 3 cut(s) 80, 179, 380
Fsp4HI GCNGC 2 cut(s) 9, 404
FspBI CTAG 2 cut(s) 38, 134
GluI GCNGC 2 cut(s) 9, 404
HaeIII GGCC 2 cut(s) 43, 310
HapII CCGG 4 cut(s) 44, 242, 301, 365
Hin1II CATG 4 cut(s) 15, 64, 94, 217
HincII GTYRAC 1 cut(s) 361
HindII GTYRAC 1 cut(s) 361
HinfI GANTC 1 cut(s) 74
HpaII CCGG 4 cut(s) 44, 242, 301, 365
HphI GGTGA 1 cut(s) 205
Hpy166II GTNNAC 2 cut(s) 211, 361
Hpy188I TCNGA 2 cut(s) 120, 400
Hpy188III TCNNGA 1 cut(s) 256
Hpy8I GTNNAC 2 cut(s) 211, 361
Hpy99I CGWCG 1 cut(s) 202
HpyCH4III ACNGT 1 cut(s) 358
HpyCH4IV ACGT 1 cut(s) 83
HpyCH4V TGCA 2 cut(s) 55, 211
HpySE526I ACGT 1 cut(s) 83
Hsp92II CATG 4 cut(s) 15, 64, 94, 217
KpnI GGTACC 1 cut(s) 241
Kzo9I GATC 1 cut(s) 252
LguI GCTCTTC 1 cut(s) 92
LmnI GCTCC 3 cut(s) 29, 87, 400
Lsp1109I GCAGC 1 cut(s) 390
LweI GCATC 1 cut(s) 58
MaeI CTAG 2 cut(s) 38, 134
MaeII ACGT 1 cut(s) 83
MaeIII GTNAC 1 cut(s) 193
MalI GATC 1 cut(s) 254
MboI GATC 1 cut(s) 252
MboII GAAGA 1 cut(s) 109
MhlI GDGCHC 1 cut(s) 213
MluCI AATT 1 cut(s) 109
MlyI GAGTC 1 cut(s) 68
MmeI TCCRAC 2 cut(s) 45, 144
MnlI CCTC 6 cut(s) 40, 87, 171, 177, 344, 373
MspI CCGG 4 cut(s) 44, 242, 301, 365
MspR9I CCNGG 3 cut(s) 242, 347, 365
MvaI CCWGG 1 cut(s) 347
NciI CCSGG 2 cut(s) 242, 365
NdeII GATC 1 cut(s) 252
NheI GCTAGC 1 cut(s) 133
NlaIII CATG 4 cut(s) 15, 64, 94, 217
NlaIV GGNNCC 1 cut(s) 239
NmuCI GTSAC 1 cut(s) 193
NspI RCATGY 2 cut(s) 64, 217
PciI ACATGT 2 cut(s) 60, 213
PciSI GCTCTTC 1 cut(s) 92
PcsI WCGNNNNNNNCGW 2 cut(s) 197, 404
PinAI ACCGGT 1 cut(s) 300
PkrI GCNGC 2 cut(s) 10, 405
PleI GAGTC 1 cut(s) 68
PmaCI CACGTG 1 cut(s) 84
PmlI CACGTG 1 cut(s) 84
PpsI GAGTC 1 cut(s) 68
Ppu21I YACGTR 1 cut(s) 84
PscI ACATGT 2 cut(s) 60, 213
Psp6I CCWGG 1 cut(s) 345
PspCI CACGTG 1 cut(s) 84
PspGI CCWGG 1 cut(s) 345
PspN4I GGNNCC 1 cut(s) 239
PspPI GGNCC 3 cut(s) 41, 309, 331
PsrI GAACNNNNNNTAC 2 cut(s) 287, 319
RsaI GTAC 3 cut(s) 59, 239, 296
RsaNI GTAC 3 cut(s) 58, 238, 295
SalI GTCGAC 1 cut(s) 359
SapI GCTCTTC 1 cut(s) 92
SatI GCNGC 2 cut(s) 9, 404
Sau3AI GATC 1 cut(s) 252
Sau96I GGNCC 3 cut(s) 41, 309, 331
SchI GAGTC 1 cut(s) 68
ScrFI CCNGG 3 cut(s) 242, 347, 365
SduI GDGCHC 1 cut(s) 213
SetI ASST 5 cut(s) 51, 86, 182, 336, 405
SfaNI GCATC 1 cut(s) 58
SinI GGWCC 1 cut(s) 331
Sse9I AATT 1 cut(s) 109
SsiI CCGC 2 cut(s) 9, 350
SspMI CTAG 2 cut(s) 38, 134
StyD4I CCNGG 3 cut(s) 240, 345, 363
TaaI ACNGT 1 cut(s) 358
TaiI ACGT 1 cut(s) 86
TaqI TCGA 2 cut(s) 360, 387
TasI AATT 1 cut(s) 109
TatI WGTACW 1 cut(s) 57
TauI GCSGC 1 cut(s) 11
TseFI GTSAC 1 cut(s) 193
TseI GCWGC 1 cut(s) 403
Tsp45I GTSAC 1 cut(s) 193
TspDTI ATGAA 1 cut(s) 384
TspGWI ACGGA 1 cut(s) 190
VneI GTGCAC 1 cut(s) 209
VpaK11BI GGWCC 1 cut(s) 331
XceI RCATGY 2 cut(s) 64, 217
XmiI GTMKAC 1 cut(s) 360
XspI CTAG 2 cut(s) 38, 134
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.