Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000070.1

Orthogroup ID

OG0007532

Physical Location & Seq

Genomic Coordinates Reverse (-)

190822 .. 192654

Gene Structure 1833 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000070.1_g000056.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 633 bp

atgtcactgaattggggtttgggtgatggaggctttgctgagcatgttattgatattgcccacccccactaccaactatttgaaggaggaggaatgcaccatgttaagttggaatcccgtcttctggattttgctcttgataagcctcatgcagtactttccaaagaggctttggcaaagaaacaagccgccaaaactggagaggcggccattgaaatattgtcaacagaaaagagctacattggtggttccgaatgcttcaaaattattcttccattctacattatggagttgaaagtgtatgtaattgctatggtgtatcaatggccggaggtggttcggtacatgttggatgctgactcgcacacgtggagcatgaggaagagcaaatcgaattggtttcagatagtggcgatgctggcgtggttggttgggttagcgaagtggttggatgatataaggaggtggaggaactcagtgacgacggttttggtgcacatgttgtatttggttctggtttggttcccagatttgataatcccaactgggtttctatatgtgtttctgattggagtttggtactaccggttcaggcccaagttactggctggaatggacctctggctctcctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005509 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005783 GO:0005829 GO:0005886 GO:0005911 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0009506 GO:0009987 GO:0012505 GO:0016020 GO:0016021 GO:0019722 GO:0019932 GO:0023052 GO:0030054 GO:0031224 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0035556 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044425 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0046872 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055044 GO:0065007 GO:0070013 GO:0071944 GO:0099402

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

C2 PRT_C

Protein Analysis

210

Amino Acids

24.28

Weight (kDa)

7.86

Isoelectric Point (pI)

36.55

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007532)

Species	Orthologous Gene IDs
malus_domestica	MD03G1049300.v1.1
rosa_chinensis	RchiOBHm_Chr2g0107641 RchiOBHm_Chr2g0171191 RchiOBHm_Chr7g0217211
rosa_laevigata	RLG00000016544 RLG00000018440 RLG00000018516
rosa_multiflora	Rmu_sc0000070.1_g000056 Rmu_sc0000147.1_g000002 Rmu_sc0001149.1_g000002 Rmu_sc0001513.1_g000002 Rmu_sc0004372.1_g000001 Rmu_sc0005690.1_g000022 Rmu_sc0007586.1_g000003 Rmu_sc0007734.1_g000006 Rmu_sc0010274.1_g000012
rosa_roxburghii	Rroxscaffold_3G00257030
rosa_samantha	Rh2BG208200 Rh2CG200900 Rh2CG606400 Rh2DG654500 Rh2DG654600 Rh7AG279600 Rh7AG306200 Rh7CG325300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	189, 206
AcoI	YGGCCR	2 cut(s)	207, 326
AcvI	CACGTG	1 cut(s)	369
AfaI	GTAC	3 cut(s)	156, 344, 581
AfiI	CCNNNNNNNGG	1 cut(s)	124
AflIII	ACRYGT	3 cut(s)	345, 366, 498
AgeI	ACCGGT	1 cut(s)	585
AgsI	TTSAA	4 cut(s)	83, 215, 262, 295
AjuI	GAANNNNNNNTTGG	1 cut(s)	34
AluBI	AGCT	1 cut(s)	237
AluI	AGCT	1 cut(s)	237
Alw21I	GWGCWC	1 cut(s)	498
Alw44I	GTGCAC	1 cut(s)	494
AoxI	GGCC	3 cut(s)	207, 326, 593
ApaLI	GTGCAC	1 cut(s)	494
ArsI	GACNNNNNNTTYG	2 cut(s)	472, 504
AsiGI	ACCGGT	1 cut(s)	585
AspS9I	GGNCC	2 cut(s)	594, 616
AsuHPI	GGTGA	1 cut(s)	35
AvaII	GGWCC	1 cut(s)	616
BaeGI	GKGCMC	1 cut(s)	498
BbrPI	CACGTG	1 cut(s)	369
BbsI	GAAGAC	1 cut(s)	113
Bbv12I	GWGCWC	1 cut(s)	498
BccI	CCATC	1 cut(s)	20
BfaI	CTAG	1 cut(s)	631
BisI	GCNGC	2 cut(s)	189, 207
BlpI	GCTNAGC	1 cut(s)	39
BlsI	GCNGC	2 cut(s)	190, 208
BmcAI	AGTACT	1 cut(s)	156
Bme18I	GGWCC	1 cut(s)	616
BmgT120I	GGNCC	2 cut(s)	594, 616
BmiI	GGNNCC	2 cut(s)	250, 524
BmrI	ACTGGG	1 cut(s)	555
BmsI	GCATC	2 cut(s)	343, 405
BmuI	ACTGGG	1 cut(s)	555
BpiI	GAAGAC	1 cut(s)	113
BpmI	CTGGAG	1 cut(s)	219
Bpu1102I	GCTNAGC	1 cut(s)	39
BsaAI	YACGTR	1 cut(s)	369
BsaWI	WCCGGW	1 cut(s)	585
Bsc4I	CCNNNNNNNGG	1 cut(s)	124
Bse118I	RCCGGY	1 cut(s)	585
Bse1I	ACTGG	3 cut(s)	202, 550, 609
BseGI	GGATG	2 cut(s)	358, 457
BseLI	CCNNNNNNNGG	1 cut(s)	124
BseMII	CTCAG	2 cut(s)	30, 489
BseNI	ACTGG	3 cut(s)	202, 550, 609
BseRI	GAGGAG	1 cut(s)	102
BseSI	GKGCMC	1 cut(s)	498
BshFI	GGCC	3 cut(s)	209, 328, 595
BshTI	ACCGGT	1 cut(s)	585
BsiHKAI	GWGCWC	1 cut(s)	498
BsiSI	CCGG	2 cut(s)	329, 586
BslI	CCNNNNNNNGG	1 cut(s)	124
BsmI	GAATGC	2 cut(s)	99, 260
BsnI	GGCC	3 cut(s)	209, 328, 595
Bsp1286I	GDGCHC	1 cut(s)	498
Bsp1720I	GCTNAGC	1 cut(s)	39
BspACI	CCGC	2 cut(s)	189, 206
BspANI	GGCC	3 cut(s)	209, 328, 595
BspCNI	CTCAG	2 cut(s)	31, 488
BspLI	GGNNCC	2 cut(s)	250, 524
BspQI	GCTCTTC	1 cut(s)	377
BsrFI	RCCGGY	1 cut(s)	585
BsrI	ACTGG	3 cut(s)	202, 550, 609
BssAI	RCCGGY	1 cut(s)	585
Bst4CI	ACNGT	1 cut(s)	487
Bst6I	CTCTTC	1 cut(s)	377
BstBAI	YACGTR	1 cut(s)	369
BstC8I	GCNNGC	1 cut(s)	420
BstDEI	CTNAG	2 cut(s)	39, 475
BstF5I	GGATG	2 cut(s)	358, 457
BstMWI	GCNNNNNNNGC	1 cut(s)	419
BstNSI	RCATGY	3 cut(s)	47, 349, 502
BstSLI	GKGCMC	1 cut(s)	498
BstV2I	GAAGAC	1 cut(s)	113
BstXI	CCANNNNNNTGG	1 cut(s)	604
BsuRI	GGCC	3 cut(s)	209, 328, 595
BtgZI	GCGATG	1 cut(s)	428
BtsCI	GGATG	2 cut(s)	358, 457
BtsIMutI	CAGTG	2 cut(s)	5, 483
Cac8I	GCNNGC	1 cut(s)	420
Cfr10I	RCCGGY	1 cut(s)	585
Cfr13I	GGNCC	2 cut(s)	594, 616
Csp6I	GTAC	3 cut(s)	155, 343, 580
CspAI	ACCGGT	1 cut(s)	585
CviAII	CATG	6 cut(s)	44, 101, 149, 346, 376, 499
CviQI	GTAC	3 cut(s)	155, 343, 580
DdeI	CTNAG	2 cut(s)	39, 475
EaeI	YGGCCR	2 cut(s)	207, 326
Eam1104I	CTCTTC	1 cut(s)	377
EarI	CTCTTC	1 cut(s)	377
Eco47I	GGWCC	1 cut(s)	616
Eco72I	CACGTG	1 cut(s)	369
FaeI	CATG	6 cut(s)	47, 104, 152, 349, 379, 502
FatI	CATG	6 cut(s)	43, 100, 148, 345, 375, 498
Fnu4HI	GCNGC	2 cut(s)	189, 207
FokI	GGATG	2 cut(s)	365, 464
Fsp4HI	GCNGC	2 cut(s)	189, 207
FspBI	CTAG	1 cut(s)	631
GluI	GCNGC	2 cut(s)	189, 207
GsuI	CTGGAG	1 cut(s)	219
HaeIII	GGCC	3 cut(s)	209, 328, 595
HapII	CCGG	2 cut(s)	329, 586
Hin1II	CATG	6 cut(s)	47, 104, 152, 349, 379, 502
HincII	GTYRAC	1 cut(s)	225
HindII	GTYRAC	1 cut(s)	225
HinfI	GANTC	2 cut(s)	113, 359
HpaII	CCGG	2 cut(s)	329, 586
HphI	GGTGA	1 cut(s)	35
Hpy166II	GTNNAC	2 cut(s)	225, 496
Hpy188I	TCNGA	3 cut(s)	253, 405, 567
Hpy188III	TCNNGA	2 cut(s)	125, 137
Hpy8I	GTNNAC	2 cut(s)	225, 496
Hpy99I	CGWCG	1 cut(s)	487
HpyAV	CCTTC	1 cut(s)	77
HpyCH4III	ACNGT	1 cut(s)	487
HpyCH4IV	ACGT	1 cut(s)	368
HpyCH4V	TGCA	3 cut(s)	97, 152, 496
HpyF10VI	GCNNNNNNNGC	1 cut(s)	419
HpyF3I	CTNAG	2 cut(s)	39, 475
HpySE526I	ACGT	1 cut(s)	368
Hsp92II	CATG	6 cut(s)	47, 104, 152, 349, 379, 502
LguI	GCTCTTC	1 cut(s)	377
LmnI	GCTCC	1 cut(s)	372
LweI	GCATC	2 cut(s)	343, 405
MaeI	CTAG	1 cut(s)	631
MaeII	ACGT	1 cut(s)	368
MaeIII	GTNAC	3 cut(s)	3, 478, 600
MboII	GAAGA	3 cut(s)	113, 263, 394
MhlI	GDGCHC	1 cut(s)	498
MluCI	AATT	4 cut(s)	10, 264, 306, 394
MlyI	GAGTC	1 cut(s)	353
MmeI	TCCRAC	3 cut(s)	90, 330, 429
MseI	TTAA	1 cut(s)	105
MspI	CCGG	2 cut(s)	329, 586
Mva1269I	GAATGC	2 cut(s)	99, 260
MwoI	GCNNNNNNNGC	1 cut(s)	419
NlaIII	CATG	6 cut(s)	47, 104, 152, 349, 379, 502
NlaIV	GGNNCC	2 cut(s)	250, 524
NmuCI	GTSAC	2 cut(s)	3, 478
NspI	RCATGY	3 cut(s)	47, 349, 502
PciI	ACATGT	2 cut(s)	345, 498
PciSI	GCTCTTC	1 cut(s)	377
PctI	GAATGC	2 cut(s)	99, 260
PfeI	GAWTC	1 cut(s)	113
PinAI	ACCGGT	1 cut(s)	585
PkrI	GCNGC	2 cut(s)	190, 208
PleI	GAGTC	1 cut(s)	353
PmaCI	CACGTG	1 cut(s)	369
PmlI	CACGTG	1 cut(s)	369
PpsI	GAGTC	1 cut(s)	353
Ppu21I	YACGTR	1 cut(s)	369
PscI	ACATGT	2 cut(s)	345, 498
PspCI	CACGTG	1 cut(s)	369
PspN4I	GGNNCC	2 cut(s)	250, 524
PspPI	GGNCC	2 cut(s)	594, 616
PsrI	GAACNNNNNNTAC	2 cut(s)	572, 604
RsaI	GTAC	3 cut(s)	156, 344, 581
RsaNI	GTAC	3 cut(s)	155, 343, 580
SapI	GCTCTTC	1 cut(s)	377
SaqAI	TTAA	1 cut(s)	105
SatI	GCNGC	2 cut(s)	189, 207
Sau96I	GGNCC	2 cut(s)	594, 616
ScaI	AGTACT	1 cut(s)	156
SchI	GAGTC	1 cut(s)	353
SduI	GDGCHC	1 cut(s)	498
SetI	ASST	5 cut(s)	239, 336, 371, 467, 621
SfaNI	GCATC	2 cut(s)	343, 405
SinI	GGWCC	1 cut(s)	616
Sse9I	AATT	4 cut(s)	10, 264, 306, 394
SsiI	CCGC	2 cut(s)	189, 206
SspI	AATATT	1 cut(s)	219
SspMI	CTAG	1 cut(s)	631
TaaI	ACNGT	1 cut(s)	487
TaiI	ACGT	1 cut(s)	371
TaqI	TCGA	1 cut(s)	392
TasI	AATT	4 cut(s)	10, 264, 306, 394
TatI	WGTACW	1 cut(s)	154
TauI	GCSGC	2 cut(s)	191, 209
TfiI	GAWTC	1 cut(s)	113
Tru1I	TTAA	1 cut(s)	105
Tru9I	TTAA	1 cut(s)	105
TscAI	CASTG	2 cut(s)	12, 483
TseFI	GTSAC	2 cut(s)	3, 478
Tsp45I	GTSAC	2 cut(s)	3, 478
TspRI	CASTG	2 cut(s)	12, 483
VneI	GTGCAC	1 cut(s)	494
VpaK11BI	GGWCC	1 cut(s)	616
XceI	RCATGY	3 cut(s)	47, 349, 502
XcmI	CCANNNNNNNNNTGG	1 cut(s)	169
XspI	CTAG	1 cut(s)	631
ZrmI	AGTACT	1 cut(s)	156

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.