RchiOBHm_Chr2g0107641

Multiple C2 and transmembrane domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0007532
Physical Location & Seq
Forward (+)
19105803 .. 19106213
411 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ48166

Sequence Viewer

Length: 339 bp
ATGGTAGCCGCATGGCTCGTGCGCTCCAAGCCTCTGTTAGGGCCGGAGGTAGTGCGGTACATGTTGGATGCTGACTCGTACACGTGGAGCATGAGGAAGAGCAAAGAGAATTGGTTTCGGATCGTGGAAATGCTAGCATGGTTGGTCAAGTTAGCGAAGTGGTTGGATGATATACGGAGGTGGAGGAACTCGGTGACGACGATTTTGGTGCACATGTTGTATTTGGTTCTGGTTTGGCCCAAGATACTGGCTGGAATGGACCTCTGGCTCTCCCAGGAGGATACGGTCGACCCGGATGAACTTGATGAAGAGTTTGACACTTTCTCGGAGCTGCTGTAG

Protein Analysis

112

Amino Acids

13.39

Weight (kDa)

4.8

Isoelectric Point (pI)

40.52

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PRT_C PF08372 70 - 108 5.8e-06 Plant phosphoribosyltransferase C-terminal
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 288
AciI CCGC 2 cut(s) 9, 55
AclWI GGATC 1 cut(s) 128
AcvI CACGTG 1 cut(s) 84
AfaI GTAC 2 cut(s) 59, 80
AfiI CCNNNNNNNGG 1 cut(s) 38
AflIII ACRYGT 3 cut(s) 60, 81, 213
AjnI CCWGG 1 cut(s) 273
AluBI AGCT 1 cut(s) 331
AluI AGCT 1 cut(s) 331
Alw21I GWGCWC 1 cut(s) 213
Alw44I GTGCAC 1 cut(s) 209
AlwI GGATC 1 cut(s) 128
AoxI GGCC 2 cut(s) 41, 236
ApaLI GTGCAC 1 cut(s) 209
ApeKI GCWGC 1 cut(s) 331
ArsI GACNNNNNNTTYG 2 cut(s) 187, 219
AspLEI GCGC 1 cut(s) 24
AspS9I GGNCC 3 cut(s) 41, 237, 259
AsuC2I CCSGG 1 cut(s) 293
AsuHPI GGTGA 1 cut(s) 205
AsuNHI GCTAGC 1 cut(s) 133
AvaII GGWCC 1 cut(s) 259
BaeGI GKGCMC 1 cut(s) 213
BauI CACGAG 1 cut(s) 17
BbrPI CACGTG 1 cut(s) 84
Bbv12I GWGCWC 1 cut(s) 213
BbvI GCAGC 1 cut(s) 318
BcgI CGANNNNNNTGC 2 cut(s) 190, 224
BciT130I CCWGG 1 cut(s) 275
BciVI GTATCC 1 cut(s) 274
BcnI CCSGG 1 cut(s) 293
BfaI CTAG 1 cut(s) 134
BfmI CTRYAG 1 cut(s) 335
BfuI GTATCC 1 cut(s) 274
BisI GCNGC 2 cut(s) 9, 332
BlsI GCNGC 2 cut(s) 10, 333
Bme1390I CCNGG 2 cut(s) 275, 293
Bme18I GGWCC 1 cut(s) 259
BmgT120I GGNCC 3 cut(s) 41, 237, 259
BmrFI CCNGG 2 cut(s) 275, 293
BmsI GCATC 1 cut(s) 58
BmtI GCTAGC 1 cut(s) 137
BpuMI CCSGG 1 cut(s) 293
BsaAI YACGTR 1 cut(s) 84
BsaJI CCNNGG 1 cut(s) 273
BsaXI ACNNNNNCTCC 1 cut(s) 320
Bsc4I CCNNNNNNNGG 1 cut(s) 38
Bse1I ACTGG 1 cut(s) 252
BseBI CCWGG 1 cut(s) 275
BseDI CCNNGG 1 cut(s) 273
BseGI GGATG 3 cut(s) 73, 172, 301
BseLI CCNNNNNNNGG 1 cut(s) 38
BseNI ACTGG 1 cut(s) 252
BseSI GKGCMC 1 cut(s) 213
BseXI GCAGC 1 cut(s) 318
Bsh1285I CGRYCG 1 cut(s) 288
BshFI GGCC 2 cut(s) 43, 238
BsiEI CGRYCG 1 cut(s) 288
BsiHKAI GWGCWC 1 cut(s) 213
BsiSI CCGG 2 cut(s) 44, 293
BslI CCNNNNNNNGG 1 cut(s) 38
BsnI GGCC 2 cut(s) 43, 238
Bsp1286I GDGCHC 1 cut(s) 213
Bsp143I GATC 1 cut(s) 120
BspACI CCGC 2 cut(s) 9, 55
BspANI GGCC 2 cut(s) 43, 238
BspOI GCTAGC 1 cut(s) 137
BspPI GGATC 1 cut(s) 128
BspQI GCTCTTC 1 cut(s) 92
BsrI ACTGG 1 cut(s) 252
BssECI CCNNGG 1 cut(s) 273
BssMI GATC 1 cut(s) 120
BssSI CACGAG 1 cut(s) 17
Bst2BI CACGAG 1 cut(s) 17
Bst2UI CCWGG 1 cut(s) 275
Bst4CI ACNGT 1 cut(s) 286
Bst6I CTCTTC 2 cut(s) 92, 303
BstBAI YACGTR 1 cut(s) 84
BstC8I GCNNGC 1 cut(s) 135
BstENI CCTNNNNNAGG 1 cut(s) 36
BstF5I GGATG 3 cut(s) 73, 172, 301
BstHHI GCGC 1 cut(s) 24
BstKTI GATC 1 cut(s) 123
BstMBI GATC 1 cut(s) 120
BstMCI CGRYCG 1 cut(s) 288
BstMWI GCNNNNNNNGC 1 cut(s) 28
BstNI CCWGG 1 cut(s) 275
BstNSI RCATGY 2 cut(s) 64, 217
BstSCI CCNGG 2 cut(s) 273, 291
BstSFI CTRYAG 1 cut(s) 335
BstSLI GKGCMC 1 cut(s) 213
BstV1I GCAGC 1 cut(s) 318
BstXI CCANNNNNNTGG 1 cut(s) 247
BsuI GTATCC 1 cut(s) 274
BsuRI GGCC 2 cut(s) 43, 238
BtsCI GGATG 3 cut(s) 73, 172, 301
Cac8I GCNNGC 1 cut(s) 135
CfoI GCGC 1 cut(s) 24
Cfr13I GGNCC 3 cut(s) 41, 237, 259
Csp6I GTAC 2 cut(s) 58, 79
CviAII CATG 5 cut(s) 12, 61, 91, 138, 214
CviJI RGCY 8 cut(s) 8, 16, 31, 43, 238, 251, 268, 331
CviKI_1 RGCY 8 cut(s) 8, 16, 31, 43, 238, 251, 268, 331
CviQI GTAC 2 cut(s) 58, 79
DpnI GATC 1 cut(s) 122
DpnII GATC 1 cut(s) 120
Eam1104I CTCTTC 2 cut(s) 92, 303
EarI CTCTTC 2 cut(s) 92, 303
Eco47I GGWCC 1 cut(s) 259
Eco72I CACGTG 1 cut(s) 84
EcoNI CCTNNNNNAGG 1 cut(s) 36
EcoRII CCWGG 1 cut(s) 273
FaeI CATG 5 cut(s) 15, 64, 94, 141, 217
FaiI YATR 6 cut(s) 13, 62, 92, 139, 173, 215
FatI CATG 5 cut(s) 11, 60, 90, 137, 213
FblI GTMKAC 1 cut(s) 288
Fnu4HI GCNGC 2 cut(s) 9, 332
FokI GGATG 3 cut(s) 80, 179, 308
Fsp4HI GCNGC 2 cut(s) 9, 332
FspBI CTAG 1 cut(s) 134
GlaI GCGC 1 cut(s) 23
GluI GCNGC 2 cut(s) 9, 332
HaeIII GGCC 2 cut(s) 43, 238
HapII CCGG 2 cut(s) 44, 293
HhaI GCGC 1 cut(s) 24
Hin1II CATG 5 cut(s) 15, 64, 94, 141, 217
Hin6I GCGC 1 cut(s) 22
HinP1I GCGC 1 cut(s) 22
HincII GTYRAC 1 cut(s) 289
HindII GTYRAC 1 cut(s) 289
HinfI GANTC 1 cut(s) 74
HpaII CCGG 2 cut(s) 44, 293
HphI GGTGA 1 cut(s) 205
Hpy166II GTNNAC 3 cut(s) 81, 211, 289
Hpy188I TCNGA 2 cut(s) 120, 328
Hpy8I GTNNAC 3 cut(s) 81, 211, 289
Hpy99I CGWCG 1 cut(s) 202
HpyCH4III ACNGT 1 cut(s) 286
HpyCH4IV ACGT 1 cut(s) 83
HpyCH4V TGCA 1 cut(s) 211
HpyF10VI GCNNNNNNNGC 1 cut(s) 28
HpySE526I ACGT 1 cut(s) 83
Hsp92II CATG 5 cut(s) 15, 64, 94, 141, 217
HspAI GCGC 1 cut(s) 22
Kzo9I GATC 1 cut(s) 120
LguI GCTCTTC 1 cut(s) 92
LmnI GCTCC 3 cut(s) 29, 87, 328
LpnPI CCDG 8 cut(s) 57, 215, 233, 237, 250, 260, 287, 306
Lsp1109I GCAGC 1 cut(s) 318
LweI GCATC 1 cut(s) 58
MaeI CTAG 1 cut(s) 134
MaeII ACGT 1 cut(s) 83
MaeIII GTNAC 1 cut(s) 193
MalI GATC 1 cut(s) 122
MboI GATC 1 cut(s) 120
MboII GAAGA 2 cut(s) 109, 320
MhlI GDGCHC 1 cut(s) 213
MluCI AATT 1 cut(s) 109
MlyI GAGTC 1 cut(s) 68
MmeI TCCRAC 2 cut(s) 45, 144
MnlI CCTC 7 cut(s) 40, 42, 87, 171, 177, 271, 272
MspI CCGG 2 cut(s) 44, 293
MspR9I CCNGG 2 cut(s) 275, 293
MvaI CCWGG 1 cut(s) 275
MwoI GCNNNNNNNGC 1 cut(s) 28
NciI CCSGG 1 cut(s) 293
NdeII GATC 1 cut(s) 120
NheI GCTAGC 1 cut(s) 133
NlaIII CATG 5 cut(s) 15, 64, 94, 141, 217
NmuCI GTSAC 1 cut(s) 193
NspI RCATGY 2 cut(s) 64, 217
PciI ACATGT 2 cut(s) 60, 213
PciSI GCTCTTC 1 cut(s) 92
PcsI WCGNNNNNNNCGW 1 cut(s) 197
PkrI GCNGC 2 cut(s) 10, 333
PleI GAGTC 1 cut(s) 68
PmaCI CACGTG 1 cut(s) 84
PmlI CACGTG 1 cut(s) 84
PpsI GAGTC 1 cut(s) 68
Ppu21I YACGTR 1 cut(s) 84
PscI ACATGT 2 cut(s) 60, 213
Psp6I CCWGG 1 cut(s) 273
PspCI CACGTG 1 cut(s) 84
PspGI CCWGG 1 cut(s) 273
PspPI GGNCC 3 cut(s) 41, 237, 259
RsaI GTAC 2 cut(s) 59, 80
RsaNI GTAC 2 cut(s) 58, 79
SalI GTCGAC 1 cut(s) 287
SapI GCTCTTC 1 cut(s) 92
SatI GCNGC 2 cut(s) 9, 332
Sau3AI GATC 1 cut(s) 120
Sau96I GGNCC 3 cut(s) 41, 237, 259
SchI GAGTC 1 cut(s) 68
ScrFI CCNGG 2 cut(s) 275, 293
SduI GDGCHC 1 cut(s) 213
SetI ASST 5 cut(s) 51, 86, 182, 264, 333
SfaNI GCATC 1 cut(s) 58
SfcI CTRYAG 1 cut(s) 335
SinI GGWCC 1 cut(s) 259
Sse9I AATT 1 cut(s) 109
SsiI CCGC 2 cut(s) 9, 55
SspMI CTAG 1 cut(s) 134
StyD4I CCNGG 2 cut(s) 273, 291
TaaI ACNGT 1 cut(s) 286
TaiI ACGT 1 cut(s) 86
TaqI TCGA 1 cut(s) 288
TasI AATT 1 cut(s) 109
TauI GCSGC 1 cut(s) 11
TseFI GTSAC 1 cut(s) 193
TseI GCWGC 1 cut(s) 331
Tsp45I GTSAC 1 cut(s) 193
TspDTI ATGAA 2 cut(s) 312, 321
TspGWI ACGGA 1 cut(s) 190
VneI GTGCAC 1 cut(s) 209
VpaK11BI GGWCC 1 cut(s) 259
XagI CCTNNNNNAGG 1 cut(s) 36
XceI RCATGY 2 cut(s) 64, 217
XmiI GTMKAC 1 cut(s) 288
XspI CTAG 1 cut(s) 134
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.