Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0007532

Physical Location & Seq

Genomic Coordinates Reverse (-)

35084170 .. 35084517

Gene Structure 348 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ19438

Sequence Viewer

CDS Protein Promoter (2k)

Length: 276 bp

ATGGTGGCTGAATGGCTAGCACGCTCCGAGCCGCCGTTAGGGCCGGAGGTGGTGCGGCACATGTTGGATGCTGACTCACACACGTGGAGCATGAGGAAGAGCAAAGCGAATTGGTTTCATATCATGGCGATGCTGGCGTGGTTGGTCCGGTTAGCAAAGTGGTTGGATGATATACAGAGGTGGAGGAACTCGGTGAGGACAGTTTTGGTGCACATGTTGTATTTGGTTCTGGTTTGGCCCAAGATACCGGCTGGAATGGATCTCTGGCTCTCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005509 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005783 GO:0005829 GO:0005886 GO:0005911 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0009506 GO:0009987 GO:0012505 GO:0016020 GO:0016021 GO:0019722 GO:0019932 GO:0023052 GO:0030054 GO:0031224 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0035556 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044425 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0046872 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055044 GO:0065007 GO:0070013 GO:0071944 GO:0099402

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

C2 PRT_C

Protein Analysis

91

Amino Acids

10.81

Weight (kDa)

9.81

Isoelectric Point (pI)

42.91

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007532)

Species	Orthologous Gene IDs
malus_domestica	MD03G1049300.v1.1
rosa_chinensis	RchiOBHm_Chr2g0107641 RchiOBHm_Chr2g0171191 RchiOBHm_Chr7g0217211
rosa_laevigata	RLG00000016544 RLG00000018440 RLG00000018516
rosa_multiflora	Rmu_sc0000070.1_g000056 Rmu_sc0000147.1_g000002 Rmu_sc0001149.1_g000002 Rmu_sc0001513.1_g000002 Rmu_sc0004372.1_g000001 Rmu_sc0005690.1_g000022 Rmu_sc0007586.1_g000003 Rmu_sc0007734.1_g000006 Rmu_sc0010274.1_g000012
rosa_roxburghii	Rroxscaffold_3G00257030
rosa_samantha	Rh2BG208200 Rh2CG200900 Rh2CG606400 Rh2DG654500 Rh2DG654600 Rh7AG279600 Rh7AG306200 Rh7CG325300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	32, 55
AclWI	GGATC	1 cut(s)	267
AcvI	CACGTG	1 cut(s)	84
AfiI	CCNNNNNNNGG	1 cut(s)	38
AflIII	ACRYGT	3 cut(s)	60, 81, 213
AleI	CACNNNNGTG	1 cut(s)	82
Alw21I	GWGCWC	1 cut(s)	213
Alw44I	GTGCAC	1 cut(s)	209
AlwI	GGATC	1 cut(s)	267
AoxI	GGCC	2 cut(s)	41, 236
ApaLI	GTGCAC	1 cut(s)	209
AspS9I	GGNCC	3 cut(s)	41, 145, 237
AsuHPI	GGTGA	1 cut(s)	205
AsuNHI	GCTAGC	1 cut(s)	16
AvaII	GGWCC	1 cut(s)	145
BaeGI	GKGCMC	1 cut(s)	213
BbrPI	CACGTG	1 cut(s)	84
Bbv12I	GWGCWC	1 cut(s)	213
BceAI	ACGGC	1 cut(s)	19
BfaI	CTAG	1 cut(s)	17
BglI	GCCNNNNNGGC	1 cut(s)	40
BisI	GCNGC	2 cut(s)	32, 56
BlsI	GCNGC	2 cut(s)	33, 57
Bme18I	GGWCC	1 cut(s)	145
BmgT120I	GGNCC	3 cut(s)	41, 145, 237
BmsI	GCATC	2 cut(s)	58, 120
BmtI	GCTAGC	1 cut(s)	20
BsaAI	YACGTR	1 cut(s)	84
BsaWI	WCCGGW	1 cut(s)	147
Bsc4I	CCNNNNNNNGG	1 cut(s)	38
Bse118I	RCCGGY	1 cut(s)	247
BseGI	GGATG	2 cut(s)	73, 172
BseLI	CCNNNNNNNGG	1 cut(s)	38
BseSI	GKGCMC	1 cut(s)	213
BshFI	GGCC	2 cut(s)	43, 238
BsiHKAI	GWGCWC	1 cut(s)	213
BsiSI	CCGG	3 cut(s)	44, 148, 248
BslI	CCNNNNNNNGG	1 cut(s)	38
BsnI	GGCC	2 cut(s)	43, 238
Bsp1286I	GDGCHC	1 cut(s)	213
Bsp143I	GATC	1 cut(s)	259
BspACI	CCGC	2 cut(s)	32, 55
BspANI	GGCC	2 cut(s)	43, 238
BspOI	GCTAGC	1 cut(s)	20
BspPI	GGATC	1 cut(s)	267
BspQI	GCTCTTC	1 cut(s)	92
BsrFI	RCCGGY	1 cut(s)	247
BssAI	RCCGGY	1 cut(s)	247
BssMI	GATC	1 cut(s)	259
Bst4CI	ACNGT	1 cut(s)	202
Bst6I	CTCTTC	1 cut(s)	92
BstBAI	YACGTR	1 cut(s)	84
BstC8I	GCNNGC	3 cut(s)	18, 22, 135
BstF5I	GGATG	2 cut(s)	73, 172
BstKTI	GATC	1 cut(s)	262
BstMBI	GATC	1 cut(s)	259
BstMWI	GCNNNNNNNGC	2 cut(s)	40, 134
BstNSI	RCATGY	2 cut(s)	64, 217
BstSLI	GKGCMC	1 cut(s)	213
BstX2I	RGATCY	1 cut(s)	259
BstYI	RGATCY	1 cut(s)	259
BsuRI	GGCC	2 cut(s)	43, 238
BtgZI	GCGATG	1 cut(s)	143
BtsCI	GGATG	2 cut(s)	73, 172
Cac8I	GCNNGC	3 cut(s)	18, 22, 135
Cfr10I	RCCGGY	1 cut(s)	247
Cfr13I	GGNCC	3 cut(s)	41, 145, 237
CviAII	CATG	4 cut(s)	61, 91, 124, 214
CviJI	RGCY	7 cut(s)	8, 16, 31, 43, 238, 251, 268
CviKI_1	RGCY	7 cut(s)	8, 16, 31, 43, 238, 251, 268
DpnI	GATC	1 cut(s)	261
DpnII	GATC	1 cut(s)	259
Eam1104I	CTCTTC	1 cut(s)	92
EarI	CTCTTC	1 cut(s)	92
Eco47I	GGWCC	1 cut(s)	145
Eco72I	CACGTG	1 cut(s)	84
FaeI	CATG	4 cut(s)	64, 94, 127, 217
FaiI	YATR	7 cut(s)	62, 92, 120, 125, 173, 215, 274
FatI	CATG	4 cut(s)	60, 90, 123, 213
Fnu4HI	GCNGC	2 cut(s)	32, 56
FokI	GGATG	2 cut(s)	80, 179
Fsp4HI	GCNGC	2 cut(s)	32, 56
FspBI	CTAG	1 cut(s)	17
GluI	GCNGC	2 cut(s)	32, 56
HaeIII	GGCC	2 cut(s)	43, 238
HapII	CCGG	3 cut(s)	44, 148, 248
Hin1II	CATG	4 cut(s)	64, 94, 127, 217
HinfI	GANTC	1 cut(s)	74
HpaII	CCGG	3 cut(s)	44, 148, 248
HphI	GGTGA	1 cut(s)	205
Hpy166II	GTNNAC	1 cut(s)	211
Hpy188I	TCNGA	1 cut(s)	28
Hpy8I	GTNNAC	1 cut(s)	211
HpyCH4III	ACNGT	1 cut(s)	202
HpyCH4IV	ACGT	1 cut(s)	83
HpyCH4V	TGCA	1 cut(s)	211
HpyF10VI	GCNNNNNNNGC	2 cut(s)	40, 134
HpySE526I	ACGT	1 cut(s)	83
Hsp92II	CATG	4 cut(s)	64, 94, 127, 217
Kzo9I	GATC	1 cut(s)	259
LguI	GCTCTTC	1 cut(s)	92
LmnI	GCTCC	2 cut(s)	29, 87
LpnPI	CCDG	7 cut(s)	57, 119, 161, 215, 237, 250, 261
LweI	GCATC	2 cut(s)	58, 120
MaeI	CTAG	1 cut(s)	17
MaeII	ACGT	1 cut(s)	83
MalI	GATC	1 cut(s)	261
MboI	GATC	1 cut(s)	259
MboII	GAAGA	1 cut(s)	109
MflI	RGATCY	1 cut(s)	259
MhlI	GDGCHC	1 cut(s)	213
MluCI	AATT	1 cut(s)	109
MlyI	GAGTC	1 cut(s)	68
MmeI	TCCRAC	2 cut(s)	45, 144
MnlI	CCTC	5 cut(s)	40, 87, 171, 177, 189
MslI	CAYNNNNRTG	2 cut(s)	82, 128
MspI	CCGG	3 cut(s)	44, 148, 248
MwoI	GCNNNNNNNGC	2 cut(s)	40, 134
NdeII	GATC	1 cut(s)	259
NheI	GCTAGC	1 cut(s)	16
NlaIII	CATG	4 cut(s)	64, 94, 127, 217
NspI	RCATGY	2 cut(s)	64, 217
OliI	CACNNNNGTG	1 cut(s)	82
PciI	ACATGT	2 cut(s)	60, 213
PciSI	GCTCTTC	1 cut(s)	92
PkrI	GCNGC	2 cut(s)	33, 57
PleI	GAGTC	1 cut(s)	68
PmaCI	CACGTG	1 cut(s)	84
PmlI	CACGTG	1 cut(s)	84
PpsI	GAGTC	1 cut(s)	68
Ppu21I	YACGTR	1 cut(s)	84
PscI	ACATGT	2 cut(s)	60, 213
PspCI	CACGTG	1 cut(s)	84
PspPI	GGNCC	3 cut(s)	41, 145, 237
PsuI	RGATCY	1 cut(s)	259
RseI	CAYNNNNRTG	2 cut(s)	82, 128
SapI	GCTCTTC	1 cut(s)	92
SatI	GCNGC	2 cut(s)	32, 56
Sau3AI	GATC	1 cut(s)	259
Sau96I	GGNCC	3 cut(s)	41, 145, 237
SchI	GAGTC	1 cut(s)	68
SduI	GDGCHC	1 cut(s)	213
SetI	ASST	3 cut(s)	51, 86, 182
SfaNI	GCATC	2 cut(s)	58, 120
SinI	GGWCC	1 cut(s)	145
SmiMI	CAYNNNNRTG	2 cut(s)	82, 128
Sse9I	AATT	1 cut(s)	109
SsiI	CCGC	2 cut(s)	32, 55
SspMI	CTAG	1 cut(s)	17
TaaI	ACNGT	1 cut(s)	202
TaiI	ACGT	1 cut(s)	86
TasI	AATT	1 cut(s)	109
TauI	GCSGC	2 cut(s)	34, 58
TspDTI	ATGAA	1 cut(s)	107
VneI	GTGCAC	1 cut(s)	209
VpaK11BI	GGWCC	1 cut(s)	145
XceI	RCATGY	2 cut(s)	64, 217
XspI	CTAG	1 cut(s)	17

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.