Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0007532

Physical Location & Seq

Genomic Coordinates Reverse (-)

29463207 .. 29463617

Gene Structure 411 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG279600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 411 bp

ATGGTGGCCGCATGGCTCGCATACTCCGAGCCGCCACTAGGGCTGGAGGTGGTGCGGTACATGTTGGATGCTGACTTGCACACGTGGAGCATGAGGAAGAGCAAAGCAAATTGGTTTCGGATCGTAACGATGCTGGCGTGGTTGGTCGGGTTAGCGAAGTGGTTGGATGATATACGGAGGTGGAGAAACTCGGTGACGACGGTTTTGGTGCACATGTTGTATTTAGTTCTGGTTTGGTATCAGGATTTGATAATCCCGACTGTGTTTCTCTATGTGTTTCTGATTGGGGTTTGGTACTACCAGTTCAGGCCAAAGATACCAGCTGGAATGGACCTCTGGCTCTCCCAAGCAGATACGGTCAACCCGGATGAACTTGATGAGGAGTTCGACACTTTCTCGGAGCTGTCGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005509 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005783 GO:0005829 GO:0005886 GO:0005911 GO:0007154 GO:0007165 GO:0007275 GO:0008150 GO:0009506 GO:0009987 GO:0012505 GO:0016020 GO:0016021 GO:0019722 GO:0019932 GO:0023052 GO:0030054 GO:0031224 GO:0031974 GO:0031981 GO:0032501 GO:0032502 GO:0035556 GO:0043167 GO:0043169 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044425 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0046872 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055044 GO:0065007 GO:0070013 GO:0071944 GO:0099402

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

C2 PRT_C

Protein Analysis

136

Amino Acids

16.14

Weight (kDa)

4.85

Isoelectric Point (pI)

32.45

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PRT_C	PF08372	85 - 133	1.4e-15	Plant phosphoribosyltransferase C-terminal

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007532)

Species	Orthologous Gene IDs
malus_domestica	MD03G1049300.v1.1
rosa_chinensis	RchiOBHm_Chr2g0107641 RchiOBHm_Chr2g0171191 RchiOBHm_Chr7g0217211
rosa_laevigata	RLG00000016544 RLG00000018440 RLG00000018516
rosa_multiflora	Rmu_sc0000070.1_g000056 Rmu_sc0000147.1_g000002 Rmu_sc0001149.1_g000002 Rmu_sc0001513.1_g000002 Rmu_sc0004372.1_g000001 Rmu_sc0005690.1_g000022 Rmu_sc0007586.1_g000003 Rmu_sc0007734.1_g000006 Rmu_sc0010274.1_g000012
rosa_roxburghii	Rroxscaffold_3G00257030
rosa_samantha	Rh2BG208200 Rh2CG200900 Rh2CG606400 Rh2DG654500 Rh2DG654600 Rh7AG279600 Rh7AG306200 Rh7CG325300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	9, 32, 55
AclWI	GGATC	1 cut(s)	128
AcoI	YGGCCR	1 cut(s)	6
AcvI	CACGTG	1 cut(s)	84
AfaI	GTAC	2 cut(s)	59, 296
AfiI	CCNNNNNNNGG	1 cut(s)	38
AflIII	ACRYGT	3 cut(s)	60, 81, 213
AluBI	AGCT	2 cut(s)	323, 403
AluI	AGCT	2 cut(s)	323, 403
Alw21I	GWGCWC	1 cut(s)	213
Alw44I	GTGCAC	1 cut(s)	209
AlwI	GGATC	1 cut(s)	128
AoxI	GGCC	2 cut(s)	6, 308
ApaLI	GTGCAC	1 cut(s)	209
ArsI	GACNNNNNNTTYG	2 cut(s)	187, 219
AspS9I	GGNCC	1 cut(s)	331
AsuC2I	CCSGG	1 cut(s)	365
AsuHPI	GGTGA	1 cut(s)	205
AvaII	GGWCC	1 cut(s)	331
BaeGI	GKGCMC	1 cut(s)	213
BbrPI	CACGTG	1 cut(s)	84
Bbv12I	GWGCWC	1 cut(s)	213
BcnI	CCSGG	1 cut(s)	365
BfaI	CTAG	1 cut(s)	38
BglI	GCCNNNNNGGC	1 cut(s)	40
BisI	GCNGC	2 cut(s)	9, 32
BlsI	GCNGC	2 cut(s)	10, 33
Bme1390I	CCNGG	1 cut(s)	365
Bme18I	GGWCC	1 cut(s)	331
BmgT120I	GGNCC	1 cut(s)	331
BmrFI	CCNGG	1 cut(s)	365
BmsI	GCATC	2 cut(s)	58, 120
BpmI	CTGGAG	1 cut(s)	65
BpuMI	CCSGG	1 cut(s)	365
BsaAI	YACGTR	1 cut(s)	84
BsaXI	ACNNNNNCTCC	1 cut(s)	392
Bsc4I	CCNNNNNNNGG	1 cut(s)	38
Bse1I	ACTGG	1 cut(s)	301
BseGI	GGATG	3 cut(s)	73, 172, 373
BseLI	CCNNNNNNNGG	1 cut(s)	38
BseNI	ACTGG	1 cut(s)	301
BseRI	GAGGAG	1 cut(s)	395
BseSI	GKGCMC	1 cut(s)	213
BshFI	GGCC	2 cut(s)	8, 310
BsiHKAI	GWGCWC	1 cut(s)	213
BsiSI	CCGG	1 cut(s)	365
BslI	CCNNNNNNNGG	1 cut(s)	38
BsnI	GGCC	2 cut(s)	8, 310
Bsp1286I	GDGCHC	1 cut(s)	213
Bsp143I	GATC	1 cut(s)	120
BspACI	CCGC	3 cut(s)	9, 32, 55
BspANI	GGCC	2 cut(s)	8, 310
BspPI	GGATC	1 cut(s)	128
BspQI	GCTCTTC	1 cut(s)	92
BsrI	ACTGG	1 cut(s)	301
BssMI	GATC	1 cut(s)	120
Bst4CI	ACNGT	3 cut(s)	202, 262, 358
Bst6I	CTCTTC	1 cut(s)	92
BstBAI	YACGTR	1 cut(s)	84
BstC8I	GCNNGC	2 cut(s)	18, 135
BstF5I	GGATG	3 cut(s)	73, 172, 373
BstKTI	GATC	1 cut(s)	123
BstMBI	GATC	1 cut(s)	120
BstMWI	GCNNNNNNNGC	2 cut(s)	17, 40
BstNSI	RCATGY	2 cut(s)	64, 217
BstSCI	CCNGG	1 cut(s)	363
BstSLI	GKGCMC	1 cut(s)	213
BsuRI	GGCC	2 cut(s)	8, 310
BtsCI	GGATG	3 cut(s)	73, 172, 373
Cac8I	GCNNGC	2 cut(s)	18, 135
Cfr13I	GGNCC	1 cut(s)	331
Csp6I	GTAC	2 cut(s)	58, 295
CviAII	CATG	4 cut(s)	12, 61, 91, 214
CviJI	RGCY	8 cut(s)	8, 16, 31, 43, 310, 323, 340, 403
CviKI_1	RGCY	8 cut(s)	8, 16, 31, 43, 310, 323, 340, 403
CviQI	GTAC	2 cut(s)	58, 295
DpnI	GATC	1 cut(s)	122
DpnII	GATC	1 cut(s)	120
EaeI	YGGCCR	1 cut(s)	6
Eam1104I	CTCTTC	1 cut(s)	92
EarI	CTCTTC	1 cut(s)	92
Eco47I	GGWCC	1 cut(s)	331
Eco72I	CACGTG	1 cut(s)	84
FaeI	CATG	4 cut(s)	15, 64, 94, 217
FaiI	YATR	7 cut(s)	13, 22, 62, 92, 173, 215, 273
FatI	CATG	4 cut(s)	11, 60, 90, 213
Fnu4HI	GCNGC	2 cut(s)	9, 32
FokI	GGATG	3 cut(s)	80, 179, 380
Fsp4HI	GCNGC	2 cut(s)	9, 32
FspBI	CTAG	1 cut(s)	38
GluI	GCNGC	2 cut(s)	9, 32
GsuI	CTGGAG	1 cut(s)	65
HaeIII	GGCC	2 cut(s)	8, 310
HapII	CCGG	1 cut(s)	365
Hin1II	CATG	4 cut(s)	15, 64, 94, 217
HincII	GTYRAC	1 cut(s)	361
HindII	GTYRAC	1 cut(s)	361
HpaII	CCGG	1 cut(s)	365
HphI	GGTGA	1 cut(s)	205
Hpy166II	GTNNAC	2 cut(s)	211, 361
Hpy188I	TCNGA	4 cut(s)	28, 120, 282, 400
Hpy188III	TCNNGA	2 cut(s)	242, 256
Hpy8I	GTNNAC	2 cut(s)	211, 361
Hpy99I	CGWCG	1 cut(s)	202
HpyCH4III	ACNGT	3 cut(s)	202, 262, 358
HpyCH4IV	ACGT	1 cut(s)	83
HpyCH4V	TGCA	2 cut(s)	79, 211
HpyF10VI	GCNNNNNNNGC	2 cut(s)	17, 40
HpySE526I	ACGT	1 cut(s)	83
Hsp92II	CATG	4 cut(s)	15, 64, 94, 217
Kzo9I	GATC	1 cut(s)	120
LguI	GCTCTTC	1 cut(s)	92
LmnI	GCTCC	2 cut(s)	87, 400
LweI	GCATC	2 cut(s)	58, 120
MaeI	CTAG	1 cut(s)	38
MaeII	ACGT	1 cut(s)	83
MaeIII	GTNAC	2 cut(s)	124, 193
MalI	GATC	1 cut(s)	122
MboI	GATC	1 cut(s)	120
MboII	GAAGA	1 cut(s)	109
MhlI	GDGCHC	1 cut(s)	213
MluCI	AATT	1 cut(s)	109
MmeI	TCCRAC	2 cut(s)	45, 144
MnlI	CCTC	5 cut(s)	40, 87, 171, 344, 373
MspA1I	CMGCKG	1 cut(s)	323
MspI	CCGG	1 cut(s)	365
MspR9I	CCNGG	1 cut(s)	365
MwoI	GCNNNNNNNGC	2 cut(s)	17, 40
NciI	CCSGG	1 cut(s)	365
NdeII	GATC	1 cut(s)	120
NlaIII	CATG	4 cut(s)	15, 64, 94, 217
NmuCI	GTSAC	1 cut(s)	193
NspI	RCATGY	2 cut(s)	64, 217
PciI	ACATGT	2 cut(s)	60, 213
PciSI	GCTCTTC	1 cut(s)	92
PcsI	WCGNNNNNNNCGW	3 cut(s)	24, 134, 404
PkrI	GCNGC	2 cut(s)	10, 33
PmaCI	CACGTG	1 cut(s)	84
PmlI	CACGTG	1 cut(s)	84
Ppu21I	YACGTR	1 cut(s)	84
PscI	ACATGT	2 cut(s)	60, 213
PspCI	CACGTG	1 cut(s)	84
PspPI	GGNCC	1 cut(s)	331
PsrI	GAACNNNNNNTAC	2 cut(s)	287, 319
PvuII	CAGCTG	1 cut(s)	323
RsaI	GTAC	2 cut(s)	59, 296
RsaNI	GTAC	2 cut(s)	58, 295
SapI	GCTCTTC	1 cut(s)	92
SatI	GCNGC	2 cut(s)	9, 32
Sau3AI	GATC	1 cut(s)	120
Sau96I	GGNCC	1 cut(s)	331
ScrFI	CCNGG	1 cut(s)	365
SduI	GDGCHC	1 cut(s)	213
SetI	ASST	6 cut(s)	51, 86, 182, 325, 336, 405
SfaNI	GCATC	2 cut(s)	58, 120
SinI	GGWCC	1 cut(s)	331
Sse9I	AATT	1 cut(s)	109
SsiI	CCGC	3 cut(s)	9, 32, 55
SspMI	CTAG	1 cut(s)	38
StyD4I	CCNGG	1 cut(s)	363
TaaI	ACNGT	3 cut(s)	202, 262, 358
TaiI	ACGT	1 cut(s)	86
TaqI	TCGA	1 cut(s)	387
TasI	AATT	1 cut(s)	109
TauI	GCSGC	2 cut(s)	11, 34
TseFI	GTSAC	1 cut(s)	193
Tsp45I	GTSAC	1 cut(s)	193
TspDTI	ATGAA	1 cut(s)	384
TspGWI	ACGGA	1 cut(s)	190
VneI	GTGCAC	1 cut(s)	209
VpaK11BI	GGWCC	1 cut(s)	331
XceI	RCATGY	2 cut(s)	64, 217
XspI	CTAG	1 cut(s)	38

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.