Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0006934

Physical Location & Seq

Genomic Coordinates Forward (+)

7481916 .. 7484165

Gene Structure 2250 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1043900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 951 bp

ATGGCAAGCAAAAAAATCGCTTGCCCTAGTTGCAGGCAATGGGTTCAAATGACGCTGTATGGCACACAGCACCGATGCGTCTGCGGTCATGTACTCACGACTCGCAGTGCTGCTGCAGAAACACAACGAGAAACTAGTGTTCGTGGTCGTGGAGATCACAAAGGTGAGCGTCATAGCTTCCGGAGATGTCAAATTGGGACAGGGACAGGGACGCTGATGTCGTTGCCCTCCTCCCGCTCGGAGGAGCCAGTACCCAGTGGATCTCAACCAAACAAGCGTGCACTTCTTTGCGGGGTGACATACAAGCAACATAAATACAAGCTCAAAGGCACTTATAATGATGTGAAAAACATGGAAAACTTGCTGACTAAGACCTTCCGTTTTCCTGCCAACTGCATACGCATACTTTCAGAAGATGATCCGCGTGACCTAGAGCGGATTCCTACAAAGAAAAATATAGAAAATTCCTTGAAATGGCTTGTGGAAGGATGCCAGCGGGGAGACTCGTTGGTGTTTTACTTCTCGGGGCATGGCTTACGACAGCCTGATTTCAAAGACGATGAGCTTGATGGGTTCGACGAGACCATTTGCCCTGTTGATTTTATGGAAGAGGGAATGATCCTTGACAATGATATTAATGAAACCATTGTTTGGCCACTCGAGGAGGGTGTCACACTTCATGCTATCGTTGATGCTTGTCACAGTGGAACGATTCTTGATCTGGAGCACGTGTACAACCCTAAACTGAATGCTTGGAAGGATAATATTCCTCCATCTCGTGCTAGAAAAAGTACAAAGGGTGGGTTAGCGATTTCTCTTAGTGCTTGCGAAGATGATAAAATGGCAATTGATACTACTGTAAGTGATCCCTCTATTATTGTGTTTAAGGAAAATATGATGAAAAGCCAACTTCTGAATGTTTCCAAGTTGAAGCTAGATGTTAGTTGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004175 GO:0004197 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008234 GO:0010941 GO:0010942 GO:0016787 GO:0019538 GO:0043067 GO:0043068 GO:0043170 GO:0044238 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0065007 GO:0070011 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_C14

Protein Analysis

317

Amino Acids

35.54

Weight (kDa)

7.09

Isoelectric Point (pI)

44.34

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_C14	PF00656	92 - 287	8.7e-26	Caspase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006934)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g28030 FvH4_5g28030
malus_domestica	MD05G1043500.v1.1 MD05G1043900.v1.1 MD10G1050900.v1.1
prunus_persica	Prupe.8G062700_v2.0.a1 Prupe.8G062700_v2.0.a1 Prupe.8G062700_v2.0.a1 Prupe.8G062700_v2.0.a1 Prupe.8G062700_v2.0.a1
pyrus_communis	pycom05g03590 pycom05g03600 pycom10g03580
rosa_chinensis	RchiOBHm_Chr6g0271771 RchiOBHm_Chr6g0271791
rosa_laevigata	RLG00000013716 RLG00000013731
rosa_multiflora	Rmu_sc0002396.1_g000009
rosa_roxburghii	Rroxscaffold_7G00196660
rosa_rugosa	Rorug06G0062400
rosa_samantha	Rh6BG186100 Rh6CG180800 Rh6CG181700
rosa_wichuraiana	Rw0G011900 Rw6G015540 Rw6G015550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	336
AasI	GACNNNNNNGTC	1 cut(s)	217
AccB7I	CCANNNNNTGG	1 cut(s)	651
AccBSI	CCGCTC	2 cut(s)	237, 436
AccII	CGCG	1 cut(s)	424
AccIII	TCCGGA	1 cut(s)	180
AciI	CCGC	6 cut(s)	84, 235, 291, 422, 436, 496
AclWI	GGATC	4 cut(s)	268, 413, 613, 860
AcoI	YGGCCR	1 cut(s)	653
AcsI	RAATTY	1 cut(s)	463
AcvI	CACGTG	1 cut(s)	730
AfaI	GTAC	4 cut(s)	93, 252, 734, 793
AfiI	CCNNNNNNNGG	3 cut(s)	241, 474, 651
AflIII	ACRYGT	1 cut(s)	729
AgsI	TTSAA	4 cut(s)	47, 472, 553, 931
AhlI	ACTAGT	1 cut(s)	134
AleI	CACNNNNGTG	1 cut(s)	162
AluBI	AGCT	4 cut(s)	177, 322, 565, 934
AluI	AGCT	4 cut(s)	177, 322, 565, 934
Alw21I	GWGCWC	2 cut(s)	283, 729
Alw26I	GTCTC	2 cut(s)	495, 575
Alw44I	GTGCAC	1 cut(s)	279
AlwI	GGATC	4 cut(s)	268, 413, 613, 860
Ama87I	CYCGRG	2 cut(s)	523, 659
Aor13HI	TCCGGA	1 cut(s)	180
AoxI	GGCC	1 cut(s)	653
ApaLI	GTGCAC	1 cut(s)	279
ApeKI	GCWGC	2 cut(s)	110, 113
ApoI	RAATTY	1 cut(s)	463
AseI	ATTAAT	1 cut(s)	636
AsuHPI	GGTGA	2 cut(s)	176, 307
AvaI	CYCGRG	2 cut(s)	523, 659
BaeGI	GKGCMC	1 cut(s)	283
BaeI	ACNNNNGTAYC	2 cut(s)	843, 876
BalI	TGGCCA	1 cut(s)	655
BauI	CACGAG	1 cut(s)	777
BbrPI	CACGTG	1 cut(s)	730
Bbv12I	GWGCWC	2 cut(s)	283, 729
BbvI	GCAGC	2 cut(s)	97, 100
BccI	CCATC	2 cut(s)	563, 781
BcgI	CGANNNNNNTGC	3 cut(s)	32, 63, 97
BcoDI	GTCTC	2 cut(s)	495, 575
BcuI	ACTAGT	1 cut(s)	134
BfaI	CTAG	5 cut(s)	27, 135, 431, 783, 935
BfmI	CTRYAG	1 cut(s)	114
BisI	GCNGC	2 cut(s)	111, 114
BlsI	GCNGC	2 cut(s)	112, 115
BmeT110I	CYCGRG	2 cut(s)	523, 659
BmiI	GGNNCC	1 cut(s)	246
BmrI	ACTGGG	1 cut(s)	249
BmsI	GCATC	3 cut(s)	65, 479, 682
BmuI	ACTGGG	1 cut(s)	249
BpmI	CTGGAG	1 cut(s)	743
BsaAI	YACGTR	1 cut(s)	730
BsaI	GGTCTC	1 cut(s)	575
BsaWI	WCCGGW	1 cut(s)	180
BsaXI	ACNNNNNCTCC	2 cut(s)	716, 746
Bsc4I	CCNNNNNNNGG	3 cut(s)	241, 474, 651
Bse1I	ACTGG	2 cut(s)	248, 255
Bse3DI	GCAATG	1 cut(s)	44
BseAI	TCCGGA	1 cut(s)	180
BseGI	GGATG	1 cut(s)	494
BseLI	CCNNNNNNNGG	3 cut(s)	241, 474, 651
BseMI	GCAATG	1 cut(s)	44
BseNI	ACTGG	2 cut(s)	248, 255
BseRI	GAGGAG	3 cut(s)	220, 257, 677
BseSI	GKGCMC	1 cut(s)	283
BseXI	GCAGC	2 cut(s)	97, 100
Bsh1236I	CGCG	1 cut(s)	424
BshFI	GGCC	1 cut(s)	655
BsiHKAI	GWGCWC	2 cut(s)	283, 729
BsiHKCI	CYCGRG	2 cut(s)	523, 659
BsiSI	CCGG	1 cut(s)	181
BslFI	GGGAC	3 cut(s)	211, 217, 223
BslI	CCNNNNNNNGG	3 cut(s)	241, 474, 651
BsmAI	GTCTC	2 cut(s)	495, 575
BsmFI	GGGAC	3 cut(s)	211, 217, 223
BsmI	GAATGC	1 cut(s)	754
BsnI	GGCC	1 cut(s)	655
Bso31I	GGTCTC	1 cut(s)	575
BsoBI	CYCGRG	2 cut(s)	523, 659
Bsp1286I	GDGCHC	2 cut(s)	283, 729
Bsp13I	TCCGGA	1 cut(s)	180
Bsp1407I	TGTACA	1 cut(s)	732
Bsp143I	GATC	6 cut(s)	154, 260, 418, 618, 718, 865
BspACI	CCGC	6 cut(s)	84, 235, 291, 422, 436, 496
BspANI	GGCC	1 cut(s)	655
BspEI	TCCGGA	1 cut(s)	180
BspFNI	CGCG	1 cut(s)	424
BspLI	GGNNCC	1 cut(s)	246
BspMAI	CTGCAG	1 cut(s)	118
BspPI	GGATC	4 cut(s)	268, 413, 613, 860
BspTNI	GGTCTC	1 cut(s)	575
BsrBI	CCGCTC	2 cut(s)	237, 436
BsrDI	GCAATG	1 cut(s)	44
BsrGI	TGTACA	1 cut(s)	732
BsrI	ACTGG	2 cut(s)	248, 255
BssMI	GATC	6 cut(s)	154, 260, 418, 618, 718, 865
BssSI	CACGAG	1 cut(s)	777
Bst2BI	CACGAG	1 cut(s)	777
Bst4CI	ACNGT	2 cut(s)	704, 859
Bst6I	CTCTTC	1 cut(s)	603
BstAUI	TGTACA	1 cut(s)	732
BstBAI	YACGTR	1 cut(s)	730
BstC8I	GCNNGC	6 cut(s)	7, 22, 35, 279, 494, 826
BstDEI	CTNAG	2 cut(s)	369, 818
BstF5I	GGATG	1 cut(s)	494
BstFNI	CGCG	1 cut(s)	424
BstKTI	GATC	6 cut(s)	157, 263, 421, 621, 721, 868
BstMAI	GTCTC	2 cut(s)	495, 575
BstMBI	GATC	6 cut(s)	154, 260, 418, 618, 718, 865
BstMWI	GCNNNNNNNGC	1 cut(s)	30
BstSFI	CTRYAG	1 cut(s)	114
BstSLI	GKGCMC	1 cut(s)	283
BstUI	CGCG	1 cut(s)	424
BstV1I	GCAGC	2 cut(s)	97, 100
BstX2I	RGATCY	1 cut(s)	260
BstYI	RGATCY	1 cut(s)	260
BsuRI	GGCC	1 cut(s)	655
BtsCI	GGATG	1 cut(s)	494
BtsI	GCAGTG	1 cut(s)	112
BtsIMutI	CAGTG	3 cut(s)	112, 262, 709
Cac8I	GCNNGC	6 cut(s)	7, 22, 35, 279, 494, 826
CseI	GACGC	4 cut(s)	61, 67, 158, 220
Csp6I	GTAC	4 cut(s)	92, 251, 733, 792
CviAII	CATG	4 cut(s)	89, 352, 530, 680
CviQI	GTAC	4 cut(s)	92, 251, 733, 792
DdeI	CTNAG	2 cut(s)	369, 818
DpnI	GATC	6 cut(s)	156, 262, 420, 620, 720, 867
DpnII	GATC	6 cut(s)	154, 260, 418, 618, 718, 865
DrdI	GACNNNNNNGTC	1 cut(s)	217
DseDI	GACNNNNNNGTC	1 cut(s)	217
EaeI	YGGCCR	1 cut(s)	653
Eam1104I	CTCTTC	1 cut(s)	603
EarI	CTCTTC	1 cut(s)	603
Eco31I	GGTCTC	1 cut(s)	575
Eco72I	CACGTG	1 cut(s)	730
Eco88I	CYCGRG	2 cut(s)	523, 659
FaeI	CATG	4 cut(s)	92, 355, 533, 683
FaqI	GGGAC	3 cut(s)	211, 217, 223
FatI	CATG	4 cut(s)	88, 351, 529, 679
FauI	CCCGC	3 cut(s)	242, 284, 489
Fnu4HI	GCNGC	2 cut(s)	111, 114
FokI	GGATG	1 cut(s)	501
Fsp4HI	GCNGC	2 cut(s)	111, 114
FspBI	CTAG	5 cut(s)	27, 135, 431, 783, 935
GluI	GCNGC	2 cut(s)	111, 114
GsuI	CTGGAG	1 cut(s)	743
HaeIII	GGCC	1 cut(s)	655
HapII	CCGG	1 cut(s)	181
HgaI	GACGC	4 cut(s)	61, 67, 158, 220
Hin1II	CATG	4 cut(s)	92, 355, 533, 683
HinfI	GANTC	4 cut(s)	100, 439, 503, 712
HpaII	CCGG	1 cut(s)	181
HphI	GGTGA	2 cut(s)	176, 307
Hpy166II	GTNNAC	2 cut(s)	281, 733
Hpy188I	TCNGA	3 cut(s)	241, 412, 915
Hpy188III	TCNNGA	4 cut(s)	97, 181, 716, 722
Hpy8I	GTNNAC	2 cut(s)	281, 733
Hpy99I	CGWCG	1 cut(s)	581
HpyAV	CCTTC	3 cut(s)	385, 479, 751
HpyCH4III	ACNGT	2 cut(s)	704, 859
HpyCH4IV	ACGT	1 cut(s)	729
HpyCH4V	TGCA	4 cut(s)	33, 116, 281, 396
HpyF10VI	GCNNNNNNNGC	1 cut(s)	30
HpyF3I	CTNAG	2 cut(s)	369, 818
HpySE526I	ACGT	1 cut(s)	729
Hsp92II	CATG	4 cut(s)	92, 355, 533, 683
Kpn2I	TCCGGA	1 cut(s)	180
Kzo9I	GATC	6 cut(s)	154, 260, 418, 618, 718, 865
LmnI	GCTCC	2 cut(s)	244, 724
Lsp1109I	GCAGC	2 cut(s)	97, 100
LweI	GCATC	3 cut(s)	65, 479, 682
MaeI	CTAG	5 cut(s)	27, 135, 431, 783, 935
MaeII	ACGT	1 cut(s)	729
MaeIII	GTNAC	4 cut(s)	295, 425, 670, 698
MalI	GATC	6 cut(s)	156, 262, 420, 620, 720, 867
MbiI	CCGCTC	2 cut(s)	237, 436
MboI	GATC	6 cut(s)	154, 260, 418, 618, 718, 865
MboII	GAAGA	3 cut(s)	425, 620, 842
MfeI	CAATTG	1 cut(s)	846
MflI	RGATCY	1 cut(s)	260
MhlI	GDGCHC	2 cut(s)	283, 729
MlsI	TGGCCA	1 cut(s)	655
MluCI	AATT	3 cut(s)	192, 463, 846
MluNI	TGGCCA	1 cut(s)	655
MlyI	GAGTC	2 cut(s)	94, 497
MnlI	CCTC	8 cut(s)	235, 238, 241, 604, 655, 658, 780, 880
Mox20I	TGGCCA	1 cut(s)	655
MroI	TCCGGA	1 cut(s)	180
MscI	TGGCCA	1 cut(s)	655
MseI	TTAA	2 cut(s)	636, 885
MslI	CAYNNNNRTG	1 cut(s)	162
Msp20I	TGGCCA	1 cut(s)	655
MspA1I	CMGCKG	1 cut(s)	496
MspI	CCGG	1 cut(s)	181
MunI	CAATTG	1 cut(s)	846
Mva1269I	GAATGC	1 cut(s)	754
MvnI	CGCG	1 cut(s)	424
MwoI	GCNNNNNNNGC	1 cut(s)	30
NdeII	GATC	6 cut(s)	154, 260, 418, 618, 718, 865
NlaIII	CATG	4 cut(s)	92, 355, 533, 683
NlaIV	GGNNCC	1 cut(s)	246
NmuCI	GTSAC	4 cut(s)	295, 425, 670, 698
OliI	CACNNNNGTG	1 cut(s)	162
PaeR7I	CTCGAG	1 cut(s)	659
PcsI	WCGNNNNNNNCGW	1 cut(s)	218
PctI	GAATGC	1 cut(s)	754
PfeI	GAWTC	2 cut(s)	439, 712
PflMI	CCANNNNNTGG	1 cut(s)	651
PkrI	GCNGC	2 cut(s)	112, 115
PleI	GAGTC	2 cut(s)	94, 497
PmaCI	CACGTG	1 cut(s)	730
PmlI	CACGTG	1 cut(s)	730
PpsI	GAGTC	2 cut(s)	94, 497
Ppu21I	YACGTR	1 cut(s)	730
PshBI	ATTAAT	1 cut(s)	636
PsiI	TTATAA	1 cut(s)	336
PspCI	CACGTG	1 cut(s)	730
PspN4I	GGNNCC	1 cut(s)	246
PspXI	VCTCGAGB	1 cut(s)	659
PstI	CTGCAG	1 cut(s)	118
PsuI	RGATCY	1 cut(s)	260
RsaI	GTAC	4 cut(s)	93, 252, 734, 793
RsaNI	GTAC	4 cut(s)	92, 251, 733, 792
RseI	CAYNNNNRTG	1 cut(s)	162
SaqAI	TTAA	2 cut(s)	636, 885
SatI	GCNGC	2 cut(s)	111, 114
Sau3AI	GATC	6 cut(s)	154, 260, 418, 618, 718, 865
SchI	GAGTC	2 cut(s)	94, 497
SduI	GDGCHC	2 cut(s)	283, 729
SetI	ASST	8 cut(s)	166, 179, 324, 377, 432, 567, 732, 936
SfaNI	GCATC	3 cut(s)	65, 479, 682
SfcI	CTRYAG	1 cut(s)	114
Sfr274I	CTCGAG	1 cut(s)	659
SlaI	CTCGAG	1 cut(s)	659
SmiMI	CAYNNNNRTG	1 cut(s)	162
SmlI	CTYRAG	1 cut(s)	659
SmoI	CTYRAG	1 cut(s)	659
SpeI	ACTAGT	1 cut(s)	134
Sse9I	AATT	3 cut(s)	192, 463, 846
SsiI	CCGC	6 cut(s)	84, 235, 291, 422, 436, 496
SspI	AATATT	1 cut(s)	766
SspMI	CTAG	5 cut(s)	27, 135, 431, 783, 935
TaaI	ACNGT	2 cut(s)	704, 859
TaiI	ACGT	1 cut(s)	732
TaqI	TCGA	2 cut(s)	576, 660
TasI	AATT	3 cut(s)	192, 463, 846
TatI	WGTACW	3 cut(s)	91, 732, 791
TfiI	GAWTC	2 cut(s)	439, 712
Tru1I	TTAA	2 cut(s)	636, 885
Tru9I	TTAA	2 cut(s)	636, 885
TscAI	CASTG	3 cut(s)	112, 262, 709
TseFI	GTSAC	4 cut(s)	295, 425, 670, 698
TseI	GCWGC	2 cut(s)	110, 113
Tsp45I	GTSAC	4 cut(s)	295, 425, 670, 698
TspDTI	ATGAA	3 cut(s)	654, 668, 914
TspGWI	ACGGA	1 cut(s)	368
TspRI	CASTG	3 cut(s)	112, 262, 709
Van91I	CCANNNNNTGG	1 cut(s)	651
VneI	GTGCAC	1 cut(s)	279
VspI	ATTAAT	1 cut(s)	636
XapI	RAATTY	1 cut(s)	463
XhoI	CTCGAG	1 cut(s)	659
XspI	CTAG	5 cut(s)	27, 135, 431, 783, 935

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.