Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0006934

Physical Location & Seq

Genomic Coordinates Reverse (-)

8304289 .. 8305137

Gene Structure 849 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0062400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 522 bp

ATGAGACTCGCCACAAATTTCATCTGGAACCTCTTTAAAGAAACCACAGCTGCGGAAAGAAAGAACGTGTCACGAGTAAGCTTGTTCATGGATGACATGGATGGCATCGCCGATACTATCAACGATGAGATTCACGTCGGGGCTAAATATATACAGGGTATAAAAGGCGATATCAAAACGGACTTCAATGGGGTGTTATTCCACGAGATGACACACGTGTGGCAGTGGAACGGTAAGGGTCAAGCTCCCGGCGGATTAATAGAAGGAATTGCAGATTTTGTGAGACTGAAGGCCGATTATGTTCCTAATGGGTGGGTGAAAGAGGGCGAGGGTCAGCGTTGGGATGAGGGGTATTCGGTAACTGCACGATTCCTAGACTATTGCAATGGCCTCAAGAAAGGGTTTGTGGCAGAGCTTAACAAGAAGATGAGAAATGGTTATAGTGACAATTTCTTTAGCCAGTTGCTTGGGAAGACAGTTGATCAGCTGTGGAAGGACTACAAAGCCAAATTCAGGAACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004175 GO:0004197 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008234 GO:0010941 GO:0010942 GO:0016787 GO:0019538 GO:0043067 GO:0043068 GO:0043170 GO:0044238 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0065007 GO:0070011 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_C14

Protein Analysis

173

Amino Acids

19.83

Weight (kDa)

7.79

Isoelectric Point (pI)

8.6

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
BSP	PF04450	4 - 167	8.8e-67	Peptidase of plants and bacteria

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0006934)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g28030 FvH4_5g28030
malus_domestica	MD05G1043500.v1.1 MD05G1043900.v1.1 MD10G1050900.v1.1
prunus_persica	Prupe.8G062700_v2.0.a1 Prupe.8G062700_v2.0.a1 Prupe.8G062700_v2.0.a1 Prupe.8G062700_v2.0.a1 Prupe.8G062700_v2.0.a1
pyrus_communis	pycom05g03590 pycom05g03600 pycom10g03580
rosa_chinensis	RchiOBHm_Chr6g0271771 RchiOBHm_Chr6g0271791
rosa_laevigata	RLG00000013716 RLG00000013731
rosa_multiflora	Rmu_sc0002396.1_g000009
rosa_roxburghii	Rroxscaffold_7G00196660
rosa_rugosa	Rorug06G0062400
rosa_samantha	Rh6BG186100 Rh6CG180800 Rh6CG181700
rosa_wichuraiana	Rw0G011900 Rw6G015540 Rw6G015550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	53, 252
AcsI	RAATTY	2 cut(s)	16, 509
AcuI	CTGAAG	1 cut(s)	308
AcvI	CACGTG	1 cut(s)	217
AfiI	CCNNNNNNNGG	1 cut(s)	513
AflIII	ACRYGT	3 cut(s)	66, 214, 216
AgsI	TTSAA	1 cut(s)	187
AjiI	CACGTC	1 cut(s)	136
AleI	CACNNNNGTG	1 cut(s)	217
AluBI	AGCT	5 cut(s)	50, 81, 245, 415, 487
AluI	AGCT	5 cut(s)	50, 81, 245, 415, 487
Alw26I	GTCTC	1 cut(s)	277
AoxI	GGCC	2 cut(s)	291, 388
ApeKI	GCWGC	1 cut(s)	50
ApoI	RAATTY	2 cut(s)	16, 509
AseI	ATTAAT	1 cut(s)	257
AsuC2I	CCSGG	1 cut(s)	249
AsuHPI	GGTGA	1 cut(s)	328
BauI	CACGAG	2 cut(s)	72, 203
BbrPI	CACGTG	1 cut(s)	217
BbsI	GAAGAC	1 cut(s)	479
BbvI	GCAGC	1 cut(s)	37
BccI	CCATC	1 cut(s)	95
BclI	TGATCA	1 cut(s)	481
BcnI	CCSGG	1 cut(s)	249
BcoDI	GTCTC	1 cut(s)	277
BfaI	CTAG	1 cut(s)	374
BisI	GCNGC	1 cut(s)	51
BlsI	GCNGC	1 cut(s)	52
Bme1390I	CCNGG	1 cut(s)	249
BmgBI	CACGTC	1 cut(s)	136
BmiI	GGNNCC	1 cut(s)	29
BmrFI	CCNGG	1 cut(s)	249
BmsI	GCATC	1 cut(s)	114
BpiI	GAAGAC	1 cut(s)	479
BpuEI	CTTGAG	1 cut(s)	377
BpuMI	CCSGG	1 cut(s)	249
BsaAI	YACGTR	1 cut(s)	217
Bsc4I	CCNNNNNNNGG	1 cut(s)	513
Bse1I	ACTGG	1 cut(s)	460
Bse3DI	GCAATG	1 cut(s)	391
BseGI	GGATG	3 cut(s)	97, 106, 349
BseLI	CCNNNNNNNGG	1 cut(s)	513
BseMI	GCAATG	1 cut(s)	391
BseNI	ACTGG	1 cut(s)	460
BseXI	GCAGC	1 cut(s)	37
BsgI	GTGCAG	1 cut(s)	348
BshFI	GGCC	2 cut(s)	293, 390
BsiSI	CCGG	1 cut(s)	249
BslI	CCNNNNNNNGG	1 cut(s)	513
BsmAI	GTCTC	1 cut(s)	277
BsnI	GGCC	2 cut(s)	293, 390
Bsp143I	GATC	1 cut(s)	481
BspACI	CCGC	2 cut(s)	53, 252
BspANI	GGCC	2 cut(s)	293, 390
BspLI	GGNNCC	1 cut(s)	29
BsrDI	GCAATG	1 cut(s)	391
BsrI	ACTGG	1 cut(s)	460
BssMI	GATC	1 cut(s)	481
BssSI	CACGAG	2 cut(s)	72, 203
Bst2BI	CACGAG	2 cut(s)	72, 203
Bst4CI	ACNGT	2 cut(s)	233, 478
BstBAI	YACGTR	1 cut(s)	217
BstF5I	GGATG	3 cut(s)	97, 106, 349
BstKTI	GATC	1 cut(s)	484
BstMAI	GTCTC	1 cut(s)	277
BstMBI	GATC	1 cut(s)	481
BstSCI	CCNGG	1 cut(s)	247
BstV1I	GCAGC	1 cut(s)	37
BstV2I	GAAGAC	1 cut(s)	479
BstXI	CCANNNNNNTGG	1 cut(s)	467
BsuRI	GGCC	2 cut(s)	293, 390
BtgZI	GCGATG	1 cut(s)	91
BtrI	CACGTC	1 cut(s)	136
BtsCI	GGATG	3 cut(s)	97, 106, 349
BtsI	GCAGTG	1 cut(s)	230
BtsIMutI	CAGTG	1 cut(s)	230
CviAII	CATG	2 cut(s)	88, 97
DpnI	GATC	1 cut(s)	483
DpnII	GATC	1 cut(s)	481
DraI	TTTAAA	1 cut(s)	37
EciI	GGCGGA	1 cut(s)	267
Eco32I	GATATC	1 cut(s)	172
Eco57I	CTGAAG	1 cut(s)	308
Eco72I	CACGTG	1 cut(s)	217
EcoRV	GATATC	1 cut(s)	172
FaeI	CATG	2 cut(s)	91, 100
FaiI	YATR	7 cut(s)	89, 98, 150, 152, 161, 300, 441
FatI	CATG	2 cut(s)	87, 96
FbaI	TGATCA	1 cut(s)	481
Fnu4HI	GCNGC	1 cut(s)	51
FokI	GGATG	3 cut(s)	104, 113, 356
Fsp4HI	GCNGC	1 cut(s)	51
FspBI	CTAG	1 cut(s)	374
GluI	GCNGC	1 cut(s)	51
HaeIII	GGCC	2 cut(s)	293, 390
HapII	CCGG	1 cut(s)	249
Hin1II	CATG	2 cut(s)	91, 100
HindIII	AAGCTT	1 cut(s)	79
HinfI	GANTC	3 cut(s)	6, 130, 369
HpaII	CCGG	1 cut(s)	249
HphI	GGTGA	1 cut(s)	328
Hpy188III	TCNNGA	4 cut(s)	25, 72, 394, 514
Hpy99I	CGWCG	1 cut(s)	140
HpyAV	CCTTC	3 cut(s)	257, 283, 487
HpyCH4III	ACNGT	2 cut(s)	233, 478
HpyCH4IV	ACGT	3 cut(s)	66, 135, 216
HpyCH4V	TGCA	3 cut(s)	272, 365, 384
HpySE526I	ACGT	3 cut(s)	66, 135, 216
Hsp92II	CATG	2 cut(s)	91, 100
Ksp22I	TGATCA	1 cut(s)	481
Kzo9I	GATC	1 cut(s)	481
LmnI	GCTCC	1 cut(s)	250
LpnPI	CCDG	5 cut(s)	10, 140, 262, 473, 499
Lsp1109I	GCAGC	1 cut(s)	37
LweI	GCATC	1 cut(s)	114
MaeI	CTAG	1 cut(s)	374
MaeII	ACGT	3 cut(s)	66, 135, 216
MaeIII	GTNAC	3 cut(s)	69, 358, 443
MalI	GATC	1 cut(s)	483
MboI	GATC	1 cut(s)	481
MboII	GAAGA	2 cut(s)	436, 484
MluCI	AATT	4 cut(s)	16, 267, 448, 509
MnlI	CCTC	5 cut(s)	41, 316, 322, 340, 401
MseI	TTAA	3 cut(s)	36, 257, 417
MslI	CAYNNNNRTG	1 cut(s)	217
MspA1I	CMGCKG	2 cut(s)	50, 487
MspI	CCGG	1 cut(s)	249
MspR9I	CCNGG	1 cut(s)	249
NciI	CCSGG	1 cut(s)	249
NdeII	GATC	1 cut(s)	481
NlaIII	CATG	2 cut(s)	91, 100
NlaIV	GGNNCC	1 cut(s)	29
NmuCI	GTSAC	2 cut(s)	69, 443
OliI	CACNNNNGTG	1 cut(s)	217
PfeI	GAWTC	2 cut(s)	130, 369
PkrI	GCNGC	1 cut(s)	52
PmaCI	CACGTG	1 cut(s)	217
PmlI	CACGTG	1 cut(s)	217
Ppu21I	YACGTR	1 cut(s)	217
PshBI	ATTAAT	1 cut(s)	257
PspCI	CACGTG	1 cut(s)	217
PspN4I	GGNNCC	1 cut(s)	29
PvuII	CAGCTG	2 cut(s)	50, 487
RseI	CAYNNNNRTG	1 cut(s)	217
SaqAI	TTAA	3 cut(s)	36, 257, 417
SatI	GCNGC	1 cut(s)	51
Sau3AI	GATC	1 cut(s)	481
ScrFI	CCNGG	1 cut(s)	249
SetI	ASST	9 cut(s)	33, 52, 69, 83, 138, 219, 247, 417, 489
SfaNI	GCATC	1 cut(s)	114
SmiMI	CAYNNNNRTG	1 cut(s)	217
SmlI	CTYRAG	1 cut(s)	392
SmoI	CTYRAG	1 cut(s)	392
Sse9I	AATT	4 cut(s)	16, 267, 448, 509
SsiI	CCGC	2 cut(s)	53, 252
SspMI	CTAG	1 cut(s)	374
StyD4I	CCNGG	1 cut(s)	247
TaaI	ACNGT	2 cut(s)	233, 478
TaiI	ACGT	3 cut(s)	69, 138, 219
TasI	AATT	4 cut(s)	16, 267, 448, 509
TfiI	GAWTC	2 cut(s)	130, 369
Tru1I	TTAA	3 cut(s)	36, 257, 417
Tru9I	TTAA	3 cut(s)	36, 257, 417
TscAI	CASTG	1 cut(s)	230
TseFI	GTSAC	2 cut(s)	69, 443
TseI	GCWGC	1 cut(s)	50
Tsp45I	GTSAC	2 cut(s)	69, 443
TspDTI	ATGAA	2 cut(s)	10, 76
TspGWI	ACGGA	1 cut(s)	194
TspRI	CASTG	1 cut(s)	230
VspI	ATTAAT	1 cut(s)	257
XapI	RAATTY	2 cut(s)	16, 509
XspI	CTAG	1 cut(s)	374

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.