Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0006934

Physical Location & Seq

Genomic Coordinates Reverse (-)

37392403 .. 37398565

Gene Structure 6163 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000013731

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1161 bp

ATGACCACCAATTGCAGTAATTGCAAGACGAGGCTTCCTCATCTAACTTCTCATCCAACCTCACCAATACCCCGTGTTACTCAATATCGCTGCTTCTGTGGTTATGTTAATCTGATTGAGACGACAAAGCCAGCTGATCTTGCCCAGCACCACCACGAAGGTCAGCAGCAGCAGCAGCATAGCCATCGGAGACGAGCTTCCAGCTGGATTAATTCGCATATAAAGGGATCATCACCATCATCGTCGTCCAAGAACTGTAAATCCCCATCACCGTCATCGTCATCGTCATCGTCATCAACCAGCTTAGTAAAAAGCTGTGGCAGAAAGCGCGCACTTCTTTGCGGAGTGACATACCAGGAGCGCAAGTACAAACTCAAAGGCACTTACAATGATGTCAATAACATGAAACAGTTGTTGATCAACACCTTTTGTTTTCCAGCCGACTGCATTCGCATACTATCAGAAAAGGAAGGGCAACCGAAAGAGCTGACTCCCACAAAGAAGAACATAGAGAAATCCCTGAAATGGCTTGTGGAGGGGTGCCAGGCAGGAGATTCGTTGGTGTTCTACTTCTCAGGACACGGACTCCGACAGCCCGATTTCAAAGACGACGAGGTTGACGGGTTCGACGAGACTATATGCCCTCTTGATTTCATGGAAGAGGGCATGATCCTTGACAATGATATCAATTCAACCATCGTTCACCCACTCAAGGAGGGCGTCACACTACATGCTATCGTTGATGCTTGTCATAGTGGAACAATTCTTGATCTACTCTACGTCTACGACCATAAAGGGAACAAGTGGAAGGATAATAGTCCTCCTTCTGGTGCTAGGAAAAGTACAAGTGGAGGGTTGGCAATTTGCATCAGTGCCTGCGAAGACGATAAAATGGCAGCAGATACAACTGCTTTTGATCGAAATGTAATGAATGGTGCCATGACATACATTCTTATTGAAATTATTAAGAAGCACTCTGGTAAAGGCATAACGTATGGAGAACTGCTCGACTTCATGTTTGATCAAATTCAAAGGATTAATGGGGATAGATGCCTCAACTCCAGAATCTTGAGAAAAGTTTTTCGACACAAAATCATTCAGCAACCTTTATTGTCATCGTCCGAAGACTTCGATGTATACAAGAAGAAATTTCTCTTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004175 GO:0004197 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008234 GO:0010941 GO:0010942 GO:0016787 GO:0019538 GO:0043067 GO:0043068 GO:0043170 GO:0044238 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0065007 GO:0070011 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_C14

Protein Analysis

387

Amino Acids

43.32

Weight (kDa)

8.7

Isoelectric Point (pI)

48.71

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_C14	PF00656	108 - 344	2e-30	Caspase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006934)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g28030 FvH4_5g28030
malus_domestica	MD05G1043500.v1.1 MD05G1043900.v1.1 MD10G1050900.v1.1
prunus_persica	Prupe.8G062700_v2.0.a1 Prupe.8G062700_v2.0.a1 Prupe.8G062700_v2.0.a1 Prupe.8G062700_v2.0.a1 Prupe.8G062700_v2.0.a1
pyrus_communis	pycom05g03590 pycom05g03600 pycom10g03580
rosa_chinensis	RchiOBHm_Chr6g0271771 RchiOBHm_Chr6g0271791
rosa_laevigata	RLG00000013716 RLG00000013731
rosa_multiflora	Rmu_sc0002396.1_g000009
rosa_roxburghii	Rroxscaffold_7G00196660
rosa_rugosa	Rorug06G0062400
rosa_samantha	Rh6BG186100 Rh6CG180800 Rh6CG181700
rosa_wichuraiana	Rw0G011900 Rw6G015540 Rw6G015550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	540, 935
AccI	GTMKAC	2 cut(s)	783, 1137
AccII	CGCG	1 cut(s)	330
AciI	CCGC	1 cut(s)	342
AclWI	GGATC	2 cut(s)	235, 664
AcsI	RAATTY	2 cut(s)	1026, 1148
AcyI	GRCGYC	1 cut(s)	720
AfaI	GTAC	2 cut(s)	368, 844
AfiI	CCNNNNNNNGG	3 cut(s)	525, 712, 827
AgsI	TTSAA	4 cut(s)	604, 693, 959, 1031
AjnI	CCWGG	2 cut(s)	354, 543
AloI	GAACNNNNNNTCC	2 cut(s)	245, 277
AluBI	AGCT	6 cut(s)	134, 197, 204, 303, 315, 487
AluI	AGCT	6 cut(s)	134, 197, 204, 303, 315, 487
Alw26I	GTCTC	3 cut(s)	113, 184, 626
AlwI	GGATC	2 cut(s)	235, 664
AlwNI	CAGNNNCTG	1 cut(s)	876
ApeKI	GCWGC	6 cut(s)	90, 166, 169, 172, 175, 896
ApoI	RAATTY	2 cut(s)	1026, 1148
ArsI	GACNNNNNNTTYG	2 cut(s)	1001, 1033
AseI	ATTAAT	2 cut(s)	210, 1038
AspLEI	GCGC	3 cut(s)	330, 332, 363
AsuHPI	GGTGA	4 cut(s)	54, 225, 261, 695
BanI	GGYRCC	2 cut(s)	540, 935
BbsI	GAAGAC	2 cut(s)	888, 1131
BbvI	GCAGC	6 cut(s)	77, 178, 181, 184, 187, 908
BccI	CCATC	4 cut(s)	192, 244, 274, 704
BcgI	CGANNNNNNTGC	4 cut(s)	167, 201, 537, 571
BciT130I	CCWGG	2 cut(s)	356, 545
BclI	TGATCA	2 cut(s)	417, 1021
BcoDI	GTCTC	3 cut(s)	113, 184, 626
BfaI	CTAG	1 cut(s)	834
BisI	GCNGC	6 cut(s)	91, 167, 170, 173, 176, 897
BlsI	GCNGC	6 cut(s)	92, 168, 171, 174, 177, 898
Bme1390I	CCNGG	2 cut(s)	356, 545
BmiI	GGNNCC	2 cut(s)	542, 937
BmrFI	CCNGG	2 cut(s)	356, 545
BmsI	GCATC	3 cut(s)	733, 876, 1040
BpiI	GAAGAC	2 cut(s)	888, 1131
BplI	GAGNNNNNCTC	4 cut(s)	22, 54, 990, 1022
BpmI	CTGGAG	1 cut(s)	1045
BpuEI	CTTGAG	2 cut(s)	695, 1090
BsaHI	GRCGYC	1 cut(s)	720
BsaXI	ACNNNNNCTCC	4 cut(s)	350, 380, 570, 600
Bsc4I	CCNNNNNNNGG	3 cut(s)	525, 712, 827
BseBI	CCWGG	2 cut(s)	356, 545
BseGI	GGATG	1 cut(s)	52
BseLI	CCNNNNNNNGG	3 cut(s)	525, 712, 827
BseMII	CTCAG	1 cut(s)	588
BsePI	GCGCGC	1 cut(s)	328
BseXI	GCAGC	6 cut(s)	77, 178, 181, 184, 187, 908
BseYI	CCCAGC	1 cut(s)	144
Bsh1236I	CGCG	1 cut(s)	330
BshNI	GGYRCC	2 cut(s)	540, 935
BslI	CCNNNNNNNGG	3 cut(s)	525, 712, 827
BsmAI	GTCTC	3 cut(s)	113, 184, 626
BsmBI	CGTCTC	2 cut(s)	113, 184
BsmI	GAATGC	1 cut(s)	447
Bsp143I	GATC	7 cut(s)	136, 227, 417, 669, 769, 916, 1021
BspACI	CCGC	1 cut(s)	342
BspCNI	CTCAG	1 cut(s)	587
BspFNI	CGCG	1 cut(s)	330
BspLI	GGNNCC	2 cut(s)	542, 937
BspPI	GGATC	2 cut(s)	235, 664
BspT107I	GGYRCC	2 cut(s)	540, 935
BssHII	GCGCGC	1 cut(s)	328
BssMI	GATC	7 cut(s)	136, 227, 417, 669, 769, 916, 1021
BssNAI	GTATAC	1 cut(s)	1138
BssNI	GRCGYC	1 cut(s)	720
Bst1107I	GTATAC	1 cut(s)	1138
Bst2UI	CCWGG	2 cut(s)	356, 545
Bst4CI	ACNGT	3 cut(s)	257, 273, 411
Bst6I	CTCTTC	1 cut(s)	654
BstACI	GRCGYC	1 cut(s)	720
BstAPI	GCANNNNNTGC	1 cut(s)	21
BstC8I	GCNNGC	3 cut(s)	132, 330, 877
BstDEI	CTNAG	2 cut(s)	304, 574
BstF5I	GGATG	1 cut(s)	52
BstFNI	CGCG	1 cut(s)	330
BstHHI	GCGC	3 cut(s)	330, 332, 363
BstKTI	GATC	7 cut(s)	139, 230, 420, 672, 772, 919, 1024
BstMAI	GTCTC	3 cut(s)	113, 184, 626
BstMBI	GATC	7 cut(s)	136, 227, 417, 669, 769, 916, 1021
BstMWI	GCNNNNNNNGC	5 cut(s)	21, 140, 172, 175, 327
BstNI	CCWGG	2 cut(s)	356, 545
BstNSI	RCATGY	1 cut(s)	734
BstSCI	CCNGG	2 cut(s)	354, 543
BstUI	CGCG	1 cut(s)	330
BstV1I	GCAGC	6 cut(s)	77, 178, 181, 184, 187, 908
BstV2I	GAAGAC	2 cut(s)	888, 1131
BstZ17I	GTATAC	1 cut(s)	1138
BtsCI	GGATG	1 cut(s)	52
BtsIMutI	CAGTG	1 cut(s)	877
Cac8I	GCNNGC	3 cut(s)	132, 330, 877
CaiI	CAGNNNCTG	1 cut(s)	876
CfoI	GCGC	3 cut(s)	330, 332, 363
CseI	GACGC	1 cut(s)	709
Csp6I	GTAC	2 cut(s)	367, 843
CviAII	CATG	6 cut(s)	403, 655, 667, 731, 940, 1015
CviQI	GTAC	2 cut(s)	367, 843
DdeI	CTNAG	2 cut(s)	304, 574
DpnI	GATC	7 cut(s)	138, 229, 419, 671, 771, 918, 1023
DpnII	GATC	7 cut(s)	136, 227, 417, 669, 769, 916, 1021
Eam1104I	CTCTTC	1 cut(s)	654
EarI	CTCTTC	1 cut(s)	654
Eco32I	GATATC	1 cut(s)	685
EcoRII	CCWGG	2 cut(s)	354, 543
EcoRV	GATATC	1 cut(s)	685
Esp3I	CGTCTC	2 cut(s)	113, 184
FaeI	CATG	6 cut(s)	406, 658, 670, 734, 943, 1018
FatI	CATG	6 cut(s)	402, 654, 666, 730, 939, 1014
FbaI	TGATCA	2 cut(s)	417, 1021
FblI	GTMKAC	2 cut(s)	783, 1137
Fnu4HI	GCNGC	6 cut(s)	91, 167, 170, 173, 176, 897
FokI	GGATG	1 cut(s)	39
Fsp4HI	GCNGC	6 cut(s)	91, 167, 170, 173, 176, 897
FspBI	CTAG	1 cut(s)	834
GlaI	GCGC	3 cut(s)	329, 331, 362
GluI	GCNGC	6 cut(s)	91, 167, 170, 173, 176, 897
GsaI	CCCAGC	1 cut(s)	148
GsuI	CTGGAG	1 cut(s)	1045
HgaI	GACGC	1 cut(s)	709
HhaI	GCGC	3 cut(s)	330, 332, 363
Hin1I	GRCGYC	1 cut(s)	720
Hin1II	CATG	6 cut(s)	406, 658, 670, 734, 943, 1018
Hin6I	GCGC	3 cut(s)	328, 330, 361
HinP1I	GCGC	3 cut(s)	328, 330, 361
HincII	GTYRAC	1 cut(s)	619
HindII	GTYRAC	1 cut(s)	619
HinfI	GANTC	4 cut(s)	490, 554, 585, 1065
HphI	GGTGA	4 cut(s)	54, 225, 261, 695
Hpy166II	GTNNAC	4 cut(s)	619, 703, 784, 1138
Hpy188I	TCNGA	5 cut(s)	114, 189, 463, 590, 1123
Hpy188III	TCNNGA	5 cut(s)	576, 647, 767, 1062, 1069
Hpy8I	GTNNAC	4 cut(s)	619, 703, 784, 1138
Hpy99I	CGWCG	3 cut(s)	247, 614, 632
HpyAV	CCTTC	4 cut(s)	152, 464, 802, 834
HpyCH4III	ACNGT	3 cut(s)	257, 273, 411
HpyCH4IV	ACGT	2 cut(s)	780, 992
HpyCH4V	TGCA	4 cut(s)	15, 24, 447, 867
HpyF10VI	GCNNNNNNNGC	5 cut(s)	21, 140, 172, 175, 327
HpyF3I	CTNAG	2 cut(s)	304, 574
HpySE526I	ACGT	2 cut(s)	780, 992
Hsp92I	GRCGYC	1 cut(s)	720
Hsp92II	CATG	6 cut(s)	406, 658, 670, 734, 943, 1018
HspAI	GCGC	3 cut(s)	328, 330, 361
Ksp22I	TGATCA	2 cut(s)	417, 1021
Kzo9I	GATC	7 cut(s)	136, 227, 417, 669, 769, 916, 1021
LmnI	GCTCC	1 cut(s)	358
Lsp1109I	GCAGC	6 cut(s)	77, 178, 181, 184, 187, 908
LweI	GCATC	3 cut(s)	733, 876, 1040
MaeI	CTAG	1 cut(s)	834
MaeII	ACGT	2 cut(s)	780, 992
MaeIII	GTNAC	3 cut(s)	76, 346, 721
MalI	GATC	7 cut(s)	138, 229, 419, 671, 771, 918, 1023
MboI	GATC	7 cut(s)	136, 227, 417, 669, 769, 916, 1021
MboII	GAAGA	5 cut(s)	514, 671, 893, 1136, 1156
MfeI	CAATTG	1 cut(s)	10
MluCI	AATT	9 cut(s)	10, 19, 211, 688, 762, 861, 960, 1026, 1148
MlyI	GAGTC	2 cut(s)	484, 579
MmeI	TCCRAC	2 cut(s)	80, 613
MseI	TTAA	4 cut(s)	108, 210, 966, 1038
MspA1I	CMGCKG	2 cut(s)	134, 204
MspR9I	CCNGG	2 cut(s)	356, 545
MunI	CAATTG	1 cut(s)	10
Mva1269I	GAATGC	1 cut(s)	447
MvaI	CCWGG	2 cut(s)	356, 545
MvnI	CGCG	1 cut(s)	330
MwoI	GCNNNNNNNGC	5 cut(s)	21, 140, 172, 175, 327
NdeII	GATC	7 cut(s)	136, 227, 417, 669, 769, 916, 1021
NlaIII	CATG	6 cut(s)	406, 658, 670, 734, 943, 1018
NlaIV	GGNNCC	2 cut(s)	542, 937
NmuCI	GTSAC	2 cut(s)	346, 721
NspI	RCATGY	1 cut(s)	734
PauI	GCGCGC	1 cut(s)	328
PcsI	WCGNNNNNNNCGW	1 cut(s)	627
PctI	GAATGC	1 cut(s)	447
PfeI	GAWTC	2 cut(s)	554, 1065
PkrI	GCNGC	6 cut(s)	92, 168, 171, 174, 177, 898
PleI	GAGTC	2 cut(s)	484, 579
PpsI	GAGTC	2 cut(s)	484, 579
PshBI	ATTAAT	2 cut(s)	210, 1038
Psp6I	CCWGG	2 cut(s)	354, 543
PspFI	CCCAGC	1 cut(s)	144
PspGI	CCWGG	2 cut(s)	354, 543
PspN4I	GGNNCC	2 cut(s)	542, 937
PstNI	CAGNNNCTG	1 cut(s)	876
PteI	GCGCGC	1 cut(s)	328
PvuII	CAGCTG	2 cut(s)	134, 204
RsaI	GTAC	2 cut(s)	368, 844
RsaNI	GTAC	2 cut(s)	367, 843
SaqAI	TTAA	4 cut(s)	108, 210, 966, 1038
SatI	GCNGC	6 cut(s)	91, 167, 170, 173, 176, 897
Sau3AI	GATC	7 cut(s)	136, 227, 417, 669, 769, 916, 1021
SchI	GAGTC	2 cut(s)	484, 579
ScrFI	CCNGG	2 cut(s)	356, 545
SfaNI	GCATC	3 cut(s)	733, 876, 1040
SmlI	CTYRAG	2 cut(s)	710, 1069
SmoI	CTYRAG	2 cut(s)	710, 1069
Sse9I	AATT	9 cut(s)	10, 19, 211, 688, 762, 861, 960, 1026, 1148
SsiI	CCGC	1 cut(s)	342
SspMI	CTAG	1 cut(s)	834
StyD4I	CCNGG	2 cut(s)	354, 543
TaaI	ACNGT	3 cut(s)	257, 273, 411
TaiI	ACGT	2 cut(s)	783, 995
TaqI	TCGA	5 cut(s)	627, 919, 1008, 1084, 1131
TasI	AATT	9 cut(s)	10, 19, 211, 688, 762, 861, 960, 1026, 1148
TatI	WGTACW	2 cut(s)	366, 842
TfiI	GAWTC	2 cut(s)	554, 1065
Tru1I	TTAA	4 cut(s)	108, 210, 966, 1038
Tru9I	TTAA	4 cut(s)	108, 210, 966, 1038
TscAI	CASTG	1 cut(s)	877
TseFI	GTSAC	2 cut(s)	346, 721
TseI	GCWGC	6 cut(s)	90, 166, 169, 172, 175, 896
Tsp45I	GTSAC	2 cut(s)	346, 721
TspDTI	ATGAA	4 cut(s)	419, 643, 944, 1003
TspGWI	ACGGA	1 cut(s)	597
TspRI	CASTG	1 cut(s)	877
VspI	ATTAAT	2 cut(s)	210, 1038
XapI	RAATTY	2 cut(s)	1026, 1148
XceI	RCATGY	1 cut(s)	734
XmiI	GTMKAC	2 cut(s)	783, 1137
XspI	CTAG	1 cut(s)	834

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.