Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0006934

Physical Location & Seq

Genomic Coordinates Forward (+)

39713375 .. 39715994

Gene Structure 2620 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00196660.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1194 bp

ATGGGAAGCACAACAATGACCACCAATTGTAGTAATTGCAAGACGAGGCTTCCTCATCTAACCTCTCATCCAACCACACCAATACCCCGTGTTACTCAATATCGCTGCTTCTGTGGTTATGTTAATCTGATTGAGACGACCAAGCCAGCTCTTGCCCAGCACCACCACGAAGGTCAGCAGCAGCAGCAGCAGCATAGCCATCGGAGACGAGCTTCCAGCTGGATTAATTCGCATATAAAGCGATCATCACCATCATCGTCGTCCAAGAACTGTAAATCCCCATCACCGTCATCGTCACCGTCATCGTCATCGTCATCGTCATCGTCATCAACCAGCTTAATAAAAAGCTGTGGCAGAAAGCGCGCACTTCTTTGCGGAGTGACATACCAGGCGCGCAAGTACAAACTCAAAGGCACTTGCAATGATGTCAATAACATGAAACACTTGTTGATCAACACCTTTTGTTTTCCAGCCGACTGCATTCGCATACTATCAGAAGAAGAAGGGCAACCGAAAGAGCTGACTCCCACAAAGAAGAACATAGAGAAATCCCTGAAATGGCTTGTGGAGGGGTGCCAGGCAGGAGATTCGTTGGTGTTCTACTTCTCAGGACACGGGCTACGGCAGCCCGATTTCAAAGACGACGAGGTTGACGGGTTCGACGAGACTATATGCCCTGTTGATTTCATGGAAGAGGGCATGATCCTTGACAATGATATCAATTCAACCATCGTTCACCCACTTAAGGAGGGCGTCACCCTTCATGCTATTGTTGATGCTTGTCATAGTGGAACAATTCTTGATCTACTCTACGTCTACGACCATAAAGGGAACAAGTGGAAGGATAATAGTCCTCCTTCTGGTGCTAGGAAAAGTACAAGTGGAGGGTTGGCAATTTGCATTAGTGCCTGCAAAGACGATAAAATGGCAGCAGATACAACTGCTTTTGATCGAAATGTAATGAATGGTGCCATGACATACATTCTCATTGAAATTATTAAGAACCACTCTGGTAAAGGCATAACGTATGGGGAACTGCTCGACTTCATGTTTGATCAAATTCAAAGGATTAATGGGGATAGATGCCTCAACTCCAGAATCTTGAGAAAAGTTTTTCGACACAAAATCATTCAGCAACCTTTATTGTCATCGTCCGAAGACTTCGATGTATACAAGAAGAAATTTCTCTTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004175 GO:0004197 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008234 GO:0010941 GO:0010942 GO:0016787 GO:0019538 GO:0043067 GO:0043068 GO:0043170 GO:0044238 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0065007 GO:0070011 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_C14

Protein Analysis

397

Amino Acids

44.33

Weight (kDa)

8.83

Isoelectric Point (pI)

52.94

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_C14	PF00656	119 - 355	2.1e-30	Caspase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006934)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g28030 FvH4_5g28030
malus_domestica	MD05G1043500.v1.1 MD05G1043900.v1.1 MD10G1050900.v1.1
prunus_persica	Prupe.8G062700_v2.0.a1 Prupe.8G062700_v2.0.a1 Prupe.8G062700_v2.0.a1 Prupe.8G062700_v2.0.a1 Prupe.8G062700_v2.0.a1
pyrus_communis	pycom05g03590 pycom05g03600 pycom10g03580
rosa_chinensis	RchiOBHm_Chr6g0271771 RchiOBHm_Chr6g0271791
rosa_laevigata	RLG00000013716 RLG00000013731
rosa_multiflora	Rmu_sc0002396.1_g000009
rosa_roxburghii	Rroxscaffold_7G00196660
rosa_rugosa	Rorug06G0062400
rosa_samantha	Rh6BG186100 Rh6CG180800 Rh6CG181700
rosa_wichuraiana	Rw0G011900 Rw6G015540 Rw6G015550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	573, 968
AccI	GTMKAC	2 cut(s)	816, 1170
AccII	CGCG	2 cut(s)	363, 394
AciI	CCGC	1 cut(s)	375
AclWI	GGATC	1 cut(s)	697
AcsI	RAATTY	2 cut(s)	1059, 1181
AcyI	GRCGYC	1 cut(s)	753
AfaI	GTAC	2 cut(s)	401, 877
AfiI	CCNNNNNNNGG	3 cut(s)	558, 745, 860
AflII	CTTAAG	1 cut(s)	743
AgsI	TTSAA	4 cut(s)	637, 726, 992, 1064
AjnI	CCWGG	2 cut(s)	387, 576
AloI	GAACNNNNNNTCC	2 cut(s)	260, 292
AluBI	AGCT	6 cut(s)	149, 212, 219, 336, 348, 520
AluI	AGCT	6 cut(s)	149, 212, 219, 336, 348, 520
Alw26I	GTCTC	3 cut(s)	128, 199, 659
AlwI	GGATC	1 cut(s)	697
ApeKI	GCWGC	8 cut(s)	105, 178, 181, 184, 187, 190, 625, 929
ApoI	RAATTY	2 cut(s)	1059, 1181
ArsI	GACNNNNNNTTYG	2 cut(s)	1034, 1066
AseI	ATTAAT	2 cut(s)	225, 1071
AspLEI	GCGC	4 cut(s)	363, 365, 394, 396
AsuHPI	GGTGA	5 cut(s)	240, 276, 288, 728, 748
BanI	GGYRCC	2 cut(s)	573, 968
BbsI	GAAGAC	1 cut(s)	1164
BbvI	GCAGC	8 cut(s)	92, 190, 193, 196, 199, 202, 637, 941
BccI	CCATC	4 cut(s)	207, 259, 289, 737
BceAI	ACGGC	1 cut(s)	638
BcgI	CGANNNNNNTGC	4 cut(s)	182, 216, 570, 604
BciT130I	CCWGG	2 cut(s)	389, 578
BclI	TGATCA	2 cut(s)	450, 1054
BcoDI	GTCTC	3 cut(s)	128, 199, 659
BfaI	CTAG	1 cut(s)	867
BfrI	CTTAAG	1 cut(s)	743
BisI	GCNGC	8 cut(s)	106, 179, 182, 185, 188, 191, 626, 930
BlsI	GCNGC	8 cut(s)	107, 180, 183, 186, 189, 192, 627, 931
Bme1390I	CCNGG	2 cut(s)	389, 578
BmiI	GGNNCC	2 cut(s)	575, 970
BmrFI	CCNGG	2 cut(s)	389, 578
BmsI	GCATC	2 cut(s)	766, 1073
BpiI	GAAGAC	1 cut(s)	1164
BplI	GAGNNNNNCTC	2 cut(s)	37, 69
BpmI	CTGGAG	1 cut(s)	1078
BpuEI	CTTGAG	1 cut(s)	1123
BsaHI	GRCGYC	1 cut(s)	753
Bsc4I	CCNNNNNNNGG	3 cut(s)	558, 745, 860
Bse3DI	GCAATG	1 cut(s)	427
BseBI	CCWGG	2 cut(s)	389, 578
BseGI	GGATG	1 cut(s)	67
BseLI	CCNNNNNNNGG	3 cut(s)	558, 745, 860
BseMI	GCAATG	1 cut(s)	427
BseMII	CTCAG	1 cut(s)	621
BsePI	GCGCGC	2 cut(s)	361, 392
BseXI	GCAGC	8 cut(s)	92, 190, 193, 196, 199, 202, 637, 941
BseYI	CCCAGC	1 cut(s)	156
Bsh1236I	CGCG	2 cut(s)	363, 394
BshNI	GGYRCC	2 cut(s)	573, 968
BslI	CCNNNNNNNGG	3 cut(s)	558, 745, 860
BsmAI	GTCTC	3 cut(s)	128, 199, 659
BsmBI	CGTCTC	2 cut(s)	128, 199
BsmI	GAATGC	1 cut(s)	480
Bsp143I	GATC	6 cut(s)	242, 450, 702, 802, 949, 1054
BspACI	CCGC	1 cut(s)	375
BspCNI	CTCAG	1 cut(s)	620
BspFNI	CGCG	2 cut(s)	363, 394
BspLI	GGNNCC	2 cut(s)	575, 970
BspPI	GGATC	1 cut(s)	697
BspT107I	GGYRCC	2 cut(s)	573, 968
BspTI	CTTAAG	1 cut(s)	743
BsrDI	GCAATG	1 cut(s)	427
BssHII	GCGCGC	2 cut(s)	361, 392
BssMI	GATC	6 cut(s)	242, 450, 702, 802, 949, 1054
BssNAI	GTATAC	1 cut(s)	1171
BssNI	GRCGYC	1 cut(s)	753
Bst1107I	GTATAC	1 cut(s)	1171
Bst2UI	CCWGG	2 cut(s)	389, 578
Bst4CI	ACNGT	3 cut(s)	272, 288, 300
Bst6I	CTCTTC	1 cut(s)	687
BstACI	GRCGYC	1 cut(s)	753
BstAFI	CTTAAG	1 cut(s)	743
BstC8I	GCNNGC	4 cut(s)	147, 363, 394, 910
BstDEI	CTNAG	1 cut(s)	607
BstF5I	GGATG	1 cut(s)	67
BstFNI	CGCG	2 cut(s)	363, 394
BstHHI	GCGC	4 cut(s)	363, 365, 394, 396
BstKTI	GATC	6 cut(s)	245, 453, 705, 805, 952, 1057
BstMAI	GTCTC	3 cut(s)	128, 199, 659
BstMBI	GATC	6 cut(s)	242, 450, 702, 802, 949, 1054
BstMWI	GCNNNNNNNGC	6 cut(s)	184, 187, 190, 238, 360, 625
BstNI	CCWGG	2 cut(s)	389, 578
BstSCI	CCNGG	2 cut(s)	387, 576
BstUI	CGCG	2 cut(s)	363, 394
BstV1I	GCAGC	8 cut(s)	92, 190, 193, 196, 199, 202, 637, 941
BstV2I	GAAGAC	1 cut(s)	1164
BstZ17I	GTATAC	1 cut(s)	1171
BtsCI	GGATG	1 cut(s)	67
Cac8I	GCNNGC	4 cut(s)	147, 363, 394, 910
CfoI	GCGC	4 cut(s)	363, 365, 394, 396
CseI	GACGC	1 cut(s)	742
Csp6I	GTAC	2 cut(s)	400, 876
CviAII	CATG	6 cut(s)	436, 688, 700, 764, 973, 1048
CviQI	GTAC	2 cut(s)	400, 876
DdeI	CTNAG	1 cut(s)	607
DpnI	GATC	6 cut(s)	244, 452, 704, 804, 951, 1056
DpnII	GATC	6 cut(s)	242, 450, 702, 802, 949, 1054
Eam1104I	CTCTTC	1 cut(s)	687
EarI	CTCTTC	1 cut(s)	687
Eco32I	GATATC	1 cut(s)	718
EcoRII	CCWGG	2 cut(s)	387, 576
EcoRV	GATATC	1 cut(s)	718
Esp3I	CGTCTC	2 cut(s)	128, 199
FaeI	CATG	6 cut(s)	439, 691, 703, 767, 976, 1051
FatI	CATG	6 cut(s)	435, 687, 699, 763, 972, 1047
FbaI	TGATCA	2 cut(s)	450, 1054
FblI	GTMKAC	2 cut(s)	816, 1170
Fnu4HI	GCNGC	8 cut(s)	106, 179, 182, 185, 188, 191, 626, 930
FokI	GGATG	1 cut(s)	54
Fsp4HI	GCNGC	8 cut(s)	106, 179, 182, 185, 188, 191, 626, 930
FspBI	CTAG	1 cut(s)	867
GlaI	GCGC	4 cut(s)	362, 364, 393, 395
GluI	GCNGC	8 cut(s)	106, 179, 182, 185, 188, 191, 626, 930
GsaI	CCCAGC	1 cut(s)	160
GsuI	CTGGAG	1 cut(s)	1078
HgaI	GACGC	1 cut(s)	742
HhaI	GCGC	4 cut(s)	363, 365, 394, 396
Hin1I	GRCGYC	1 cut(s)	753
Hin1II	CATG	6 cut(s)	439, 691, 703, 767, 976, 1051
Hin6I	GCGC	4 cut(s)	361, 363, 392, 394
HinP1I	GCGC	4 cut(s)	361, 363, 392, 394
HincII	GTYRAC	1 cut(s)	652
HindII	GTYRAC	1 cut(s)	652
HinfI	GANTC	3 cut(s)	523, 587, 1098
HphI	GGTGA	5 cut(s)	240, 276, 288, 728, 748
Hpy166II	GTNNAC	4 cut(s)	652, 736, 817, 1171
Hpy188I	TCNGA	4 cut(s)	129, 204, 496, 1156
Hpy188III	TCNNGA	4 cut(s)	609, 800, 1095, 1102
Hpy8I	GTNNAC	4 cut(s)	652, 736, 817, 1171
Hpy99I	CGWCG	3 cut(s)	262, 647, 665
HpyAV	CCTTC	5 cut(s)	164, 497, 770, 835, 867
HpyCH4III	ACNGT	3 cut(s)	272, 288, 300
HpyCH4IV	ACGT	2 cut(s)	813, 1025
HpyCH4V	TGCA	5 cut(s)	39, 420, 480, 900, 912
HpyF10VI	GCNNNNNNNGC	6 cut(s)	184, 187, 190, 238, 360, 625
HpyF3I	CTNAG	1 cut(s)	607
HpySE526I	ACGT	2 cut(s)	813, 1025
Hsp92I	GRCGYC	1 cut(s)	753
Hsp92II	CATG	6 cut(s)	439, 691, 703, 767, 976, 1051
HspAI	GCGC	4 cut(s)	361, 363, 392, 394
Ksp22I	TGATCA	2 cut(s)	450, 1054
Kzo9I	GATC	6 cut(s)	242, 450, 702, 802, 949, 1054
Lsp1109I	GCAGC	8 cut(s)	92, 190, 193, 196, 199, 202, 637, 941
LweI	GCATC	2 cut(s)	766, 1073
MaeI	CTAG	1 cut(s)	867
MaeII	ACGT	2 cut(s)	813, 1025
MaeIII	GTNAC	4 cut(s)	91, 294, 379, 754
MalI	GATC	6 cut(s)	244, 452, 704, 804, 951, 1056
MboI	GATC	6 cut(s)	242, 450, 702, 802, 949, 1054
MboII	GAAGA	6 cut(s)	509, 512, 547, 704, 1169, 1189
MfeI	CAATTG	1 cut(s)	25
MluCI	AATT	9 cut(s)	25, 34, 226, 721, 795, 894, 993, 1059, 1181
MlyI	GAGTC	1 cut(s)	517
MmeI	TCCRAC	1 cut(s)	95
MseI	TTAA	6 cut(s)	123, 225, 338, 744, 999, 1071
MslI	CAYNNNNRTG	1 cut(s)	14
MspA1I	CMGCKG	1 cut(s)	219
MspCI	CTTAAG	1 cut(s)	743
MspR9I	CCNGG	2 cut(s)	389, 578
MunI	CAATTG	1 cut(s)	25
Mva1269I	GAATGC	1 cut(s)	480
MvaI	CCWGG	2 cut(s)	389, 578
MvnI	CGCG	2 cut(s)	363, 394
MwoI	GCNNNNNNNGC	6 cut(s)	184, 187, 190, 238, 360, 625
NdeII	GATC	6 cut(s)	242, 450, 702, 802, 949, 1054
NlaIII	CATG	6 cut(s)	439, 691, 703, 767, 976, 1051
NlaIV	GGNNCC	2 cut(s)	575, 970
NmuCI	GTSAC	3 cut(s)	294, 379, 754
PauI	GCGCGC	2 cut(s)	361, 392
PcsI	WCGNNNNNNNCGW	1 cut(s)	660
PctI	GAATGC	1 cut(s)	480
PfeI	GAWTC	2 cut(s)	587, 1098
PkrI	GCNGC	8 cut(s)	107, 180, 183, 186, 189, 192, 627, 931
PleI	GAGTC	1 cut(s)	517
PpsI	GAGTC	1 cut(s)	517
PshBI	ATTAAT	2 cut(s)	225, 1071
Psp6I	CCWGG	2 cut(s)	387, 576
PspFI	CCCAGC	1 cut(s)	156
PspGI	CCWGG	2 cut(s)	387, 576
PspN4I	GGNNCC	2 cut(s)	575, 970
PteI	GCGCGC	2 cut(s)	361, 392
PvuII	CAGCTG	1 cut(s)	219
RsaI	GTAC	2 cut(s)	401, 877
RsaNI	GTAC	2 cut(s)	400, 876
RseI	CAYNNNNRTG	1 cut(s)	14
SaqAI	TTAA	6 cut(s)	123, 225, 338, 744, 999, 1071
SatI	GCNGC	8 cut(s)	106, 179, 182, 185, 188, 191, 626, 930
Sau3AI	GATC	6 cut(s)	242, 450, 702, 802, 949, 1054
SchI	GAGTC	1 cut(s)	517
ScrFI	CCNGG	2 cut(s)	389, 578
SfaNI	GCATC	2 cut(s)	766, 1073
SmiMI	CAYNNNNRTG	1 cut(s)	14
SmlI	CTYRAG	2 cut(s)	743, 1102
SmoI	CTYRAG	2 cut(s)	743, 1102
Sse9I	AATT	9 cut(s)	25, 34, 226, 721, 795, 894, 993, 1059, 1181
SsiI	CCGC	1 cut(s)	375
SspMI	CTAG	1 cut(s)	867
StyD4I	CCNGG	2 cut(s)	387, 576
TaaI	ACNGT	3 cut(s)	272, 288, 300
TaiI	ACGT	2 cut(s)	816, 1028
TaqI	TCGA	5 cut(s)	660, 952, 1041, 1117, 1164
TasI	AATT	9 cut(s)	25, 34, 226, 721, 795, 894, 993, 1059, 1181
TatI	WGTACW	2 cut(s)	399, 875
TfiI	GAWTC	2 cut(s)	587, 1098
Tru1I	TTAA	6 cut(s)	123, 225, 338, 744, 999, 1071
Tru9I	TTAA	6 cut(s)	123, 225, 338, 744, 999, 1071
TseFI	GTSAC	3 cut(s)	294, 379, 754
TseI	GCWGC	8 cut(s)	105, 178, 181, 184, 187, 190, 625, 929
Tsp45I	GTSAC	3 cut(s)	294, 379, 754
TspDTI	ATGAA	5 cut(s)	452, 676, 752, 977, 1036
Vha464I	CTTAAG	1 cut(s)	743
VspI	ATTAAT	2 cut(s)	225, 1071
XapI	RAATTY	2 cut(s)	1059, 1181
XmiI	GTMKAC	2 cut(s)	816, 1170
XspI	CTAG	1 cut(s)	867

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.