Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0006934

Physical Location & Seq

Genomic Coordinates Forward (+)

29061847 .. 29063837

Gene Structure 1991 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG181700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1167 bp

ATGAGAAGCACAACAATGACCACCAATTGTAGCAATTGCAAGACGAGGCTTCCTCATCTAACCTCTCATCCAACCTCACCAATACCCCGTGTTACTCAATATCGCTGCTTCTGTGGTTATGTTAATCTGATTGAGACGACCAAGCCAGCTGATCTTGCCCAGCACCACCACGAAGGTCAGCAGCAGCAGCATAGCCATCGGAGACGAGCTTCCAGCTGGATTAATTCGCATATAAAGGGATCATCAACATCATCGTCGTCCAAGAACTGTAAACCCCCATCACCGTCATCGTCATCGTCATCAACCAGCTTAATAAAAAGCTGTGGCAGAAAGCGCGCACTTCTTTGCGGAGTGACATACCAGGAGCGCAAGTACAAACTCAAAGGCACTTACAATGATGTCAATAACATGAAAAACTTGTTGATCAACACCTTTTGTTTTCCAGCCGACTGCATTCGCATACTATTAGAAGAAGAAGGGCAACCGAAAGAGCTGACTCCCACAAAGAAGAACATAGAGAAATCCCTGAAATGGCTTGTGGAGGGGTGCCAGGCAGGAGATTCGTTGGTGTTCTACTTCTCAGGACACGGACTCCGACAGCCCGATTTCAAAGACGACGAGGTTGACGGGTTCGACGAGACTATATGCCCTCTTGATTTCATGGAAGAGGGCATGATCCTTGACAATGATATCAATTCAACCATCGTTCACCCACTCAAGGAGGGCGTCACACTACATGCTATCGTTGATGCTTGTCATAGTGGAACAATTCTTGATCTACTCAACGTCTACGACCATAAAGGGTACAAGTGGAAGGATAATAGGCCTCCTTCTGGTGCTAGGAAAAGTACAAGTGGAGGGTTGGCAATTTGCATCAGTGCCTGCGAAGACGATAAAATGGCAGCAGATACAACTGCTTTTGATCGAAATGTAATGAATGGTGCCATGACATACATTCTTATTGAAATTATTAAGAAGCACTCTGGTAAAGGCATAACGTATGGAGAACTGCTCGACTTGATGTTTGATCAAATTCAAAGCATTAATGGGGATGGATGCCTCAACTCCAGAATCTTGAGAAAAGTTTTTCGACACAAAATCATTCAGCAACCTTTATTGTCATCGTCCGAAGACTTCGATGCATACAAGAAGAAATTTCTCTTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004175 GO:0004197 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008234 GO:0010941 GO:0010942 GO:0016787 GO:0019538 GO:0043067 GO:0043068 GO:0043170 GO:0044238 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0065007 GO:0070011 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_C14

Protein Analysis

388

Amino Acids

43.47

Weight (kDa)

8.52

Isoelectric Point (pI)

46.4

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_C14	PF00656	110 - 346	1.3e-29	Caspase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006934)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g28030 FvH4_5g28030
malus_domestica	MD05G1043500.v1.1 MD05G1043900.v1.1 MD10G1050900.v1.1
prunus_persica	Prupe.8G062700_v2.0.a1 Prupe.8G062700_v2.0.a1 Prupe.8G062700_v2.0.a1 Prupe.8G062700_v2.0.a1 Prupe.8G062700_v2.0.a1
pyrus_communis	pycom05g03590 pycom05g03600 pycom10g03580
rosa_chinensis	RchiOBHm_Chr6g0271771 RchiOBHm_Chr6g0271791
rosa_laevigata	RLG00000013716 RLG00000013731
rosa_multiflora	Rmu_sc0002396.1_g000009
rosa_roxburghii	Rroxscaffold_7G00196660
rosa_rugosa	Rorug06G0062400
rosa_samantha	Rh6BG186100 Rh6CG180800 Rh6CG181700
rosa_wichuraiana	Rw0G011900 Rw6G015540 Rw6G015550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	546, 941
AccI	GTMKAC	1 cut(s)	789
AccII	CGCG	1 cut(s)	336
AciI	CCGC	1 cut(s)	348
AclWI	GGATC	2 cut(s)	247, 670
AcsI	RAATTY	2 cut(s)	1032, 1154
AcyI	GRCGYC	1 cut(s)	726
AfaI	GTAC	3 cut(s)	374, 806, 850
AfiI	CCNNNNNNNGG	3 cut(s)	531, 718, 833
AgsI	TTSAA	4 cut(s)	610, 699, 965, 1037
AjnI	CCWGG	2 cut(s)	360, 549
AluBI	AGCT	6 cut(s)	149, 209, 216, 309, 321, 493
AluI	AGCT	6 cut(s)	149, 209, 216, 309, 321, 493
Alw26I	GTCTC	3 cut(s)	128, 196, 632
AlwI	GGATC	2 cut(s)	247, 670
AlwNI	CAGNNNCTG	1 cut(s)	882
AoxI	GGCC	1 cut(s)	824
ApeKI	GCWGC	5 cut(s)	105, 181, 184, 187, 902
ApoI	RAATTY	2 cut(s)	1032, 1154
ArsI	GACNNNNNNTTYG	2 cut(s)	1007, 1039
AseI	ATTAAT	2 cut(s)	222, 1044
AspLEI	GCGC	3 cut(s)	336, 338, 369
AsuHPI	GGTGA	3 cut(s)	69, 273, 701
BanI	GGYRCC	2 cut(s)	546, 941
BbsI	GAAGAC	2 cut(s)	894, 1137
BbvI	GCAGC	5 cut(s)	92, 193, 196, 199, 914
BccI	CCATC	4 cut(s)	204, 286, 710, 1046
BcgI	CGANNNNNNTGC	4 cut(s)	179, 213, 543, 577
BciT130I	CCWGG	2 cut(s)	362, 551
BclI	TGATCA	2 cut(s)	423, 1027
BcoDI	GTCTC	3 cut(s)	128, 196, 632
BfaI	CTAG	1 cut(s)	840
BisI	GCNGC	5 cut(s)	106, 182, 185, 188, 903
BlsI	GCNGC	5 cut(s)	107, 183, 186, 189, 904
Bme1390I	CCNGG	2 cut(s)	362, 551
BmiI	GGNNCC	2 cut(s)	548, 943
BmrFI	CCNGG	2 cut(s)	362, 551
BmsI	GCATC	4 cut(s)	739, 882, 1046, 1129
BpiI	GAAGAC	2 cut(s)	894, 1137
BplI	GAGNNNNNCTC	4 cut(s)	37, 69, 996, 1028
BpmI	CTGGAG	1 cut(s)	1051
BpuEI	CTTGAG	2 cut(s)	701, 1096
BsaHI	GRCGYC	1 cut(s)	726
BsaXI	ACNNNNNCTCC	4 cut(s)	356, 386, 576, 606
Bsc4I	CCNNNNNNNGG	3 cut(s)	531, 718, 833
BseBI	CCWGG	2 cut(s)	362, 551
BseGI	GGATG	3 cut(s)	67, 1057, 1061
BseLI	CCNNNNNNNGG	3 cut(s)	531, 718, 833
BseMII	CTCAG	1 cut(s)	594
BsePI	GCGCGC	1 cut(s)	334
BseXI	GCAGC	5 cut(s)	92, 193, 196, 199, 914
BseYI	CCCAGC	1 cut(s)	159
Bsh1236I	CGCG	1 cut(s)	336
BshFI	GGCC	1 cut(s)	826
BshNI	GGYRCC	2 cut(s)	546, 941
BslI	CCNNNNNNNGG	3 cut(s)	531, 718, 833
BsmAI	GTCTC	3 cut(s)	128, 196, 632
BsmBI	CGTCTC	2 cut(s)	128, 196
BsmI	GAATGC	1 cut(s)	453
BsnI	GGCC	1 cut(s)	826
Bsp143I	GATC	7 cut(s)	151, 239, 423, 675, 775, 922, 1027
BspACI	CCGC	1 cut(s)	348
BspANI	GGCC	1 cut(s)	826
BspCNI	CTCAG	1 cut(s)	593
BspFNI	CGCG	1 cut(s)	336
BspLI	GGNNCC	2 cut(s)	548, 943
BspPI	GGATC	2 cut(s)	247, 670
BspT107I	GGYRCC	2 cut(s)	546, 941
BssHII	GCGCGC	1 cut(s)	334
BssMI	GATC	7 cut(s)	151, 239, 423, 675, 775, 922, 1027
BssNI	GRCGYC	1 cut(s)	726
Bst2UI	CCWGG	2 cut(s)	362, 551
Bst4CI	ACNGT	2 cut(s)	269, 285
Bst6I	CTCTTC	1 cut(s)	660
BstACI	GRCGYC	1 cut(s)	726
BstC8I	GCNNGC	3 cut(s)	147, 336, 883
BstDEI	CTNAG	1 cut(s)	580
BstF5I	GGATG	3 cut(s)	67, 1057, 1061
BstFNI	CGCG	1 cut(s)	336
BstHHI	GCGC	3 cut(s)	336, 338, 369
BstKTI	GATC	7 cut(s)	154, 242, 426, 678, 778, 925, 1030
BstMAI	GTCTC	3 cut(s)	128, 196, 632
BstMBI	GATC	7 cut(s)	151, 239, 423, 675, 775, 922, 1027
BstMWI	GCNNNNNNNGC	3 cut(s)	155, 187, 333
BstNI	CCWGG	2 cut(s)	362, 551
BstNSI	RCATGY	1 cut(s)	740
BstSCI	CCNGG	2 cut(s)	360, 549
BstUI	CGCG	1 cut(s)	336
BstV1I	GCAGC	5 cut(s)	92, 193, 196, 199, 914
BstV2I	GAAGAC	2 cut(s)	894, 1137
BsuRI	GGCC	1 cut(s)	826
BtsCI	GGATG	3 cut(s)	67, 1057, 1061
BtsIMutI	CAGTG	1 cut(s)	883
Cac8I	GCNNGC	3 cut(s)	147, 336, 883
CaiI	CAGNNNCTG	1 cut(s)	882
CfoI	GCGC	3 cut(s)	336, 338, 369
CseI	GACGC	1 cut(s)	715
Csp6I	GTAC	3 cut(s)	373, 805, 849
CviAII	CATG	5 cut(s)	409, 661, 673, 737, 946
CviQI	GTAC	3 cut(s)	373, 805, 849
DdeI	CTNAG	1 cut(s)	580
DpnI	GATC	7 cut(s)	153, 241, 425, 677, 777, 924, 1029
DpnII	GATC	7 cut(s)	151, 239, 423, 675, 775, 922, 1027
Eam1104I	CTCTTC	1 cut(s)	660
EarI	CTCTTC	1 cut(s)	660
Eco147I	AGGCCT	1 cut(s)	826
Eco32I	GATATC	1 cut(s)	691
EcoRII	CCWGG	2 cut(s)	360, 549
EcoRV	GATATC	1 cut(s)	691
EcoT22I	ATGCAT	1 cut(s)	1144
Esp3I	CGTCTC	2 cut(s)	128, 196
FaeI	CATG	5 cut(s)	412, 664, 676, 740, 949
FatI	CATG	5 cut(s)	408, 660, 672, 736, 945
FbaI	TGATCA	2 cut(s)	423, 1027
FblI	GTMKAC	1 cut(s)	789
Fnu4HI	GCNGC	5 cut(s)	106, 182, 185, 188, 903
FokI	GGATG	3 cut(s)	54, 1064, 1068
Fsp4HI	GCNGC	5 cut(s)	106, 182, 185, 188, 903
FspBI	CTAG	1 cut(s)	840
GlaI	GCGC	3 cut(s)	335, 337, 368
GluI	GCNGC	5 cut(s)	106, 182, 185, 188, 903
GsaI	CCCAGC	1 cut(s)	163
GsuI	CTGGAG	1 cut(s)	1051
HaeIII	GGCC	1 cut(s)	826
HgaI	GACGC	1 cut(s)	715
HhaI	GCGC	3 cut(s)	336, 338, 369
Hin1I	GRCGYC	1 cut(s)	726
Hin1II	CATG	5 cut(s)	412, 664, 676, 740, 949
Hin6I	GCGC	3 cut(s)	334, 336, 367
HinP1I	GCGC	3 cut(s)	334, 336, 367
HincII	GTYRAC	1 cut(s)	625
HindII	GTYRAC	1 cut(s)	625
HinfI	GANTC	4 cut(s)	496, 560, 591, 1071
HphI	GGTGA	3 cut(s)	69, 273, 701
Hpy166II	GTNNAC	4 cut(s)	272, 625, 709, 790
Hpy188I	TCNGA	4 cut(s)	129, 201, 596, 1129
Hpy188III	TCNNGA	5 cut(s)	582, 653, 773, 1068, 1075
Hpy8I	GTNNAC	4 cut(s)	272, 625, 709, 790
Hpy99I	CGWCG	3 cut(s)	259, 620, 638
HpyAV	CCTTC	4 cut(s)	167, 470, 808, 840
HpyCH4III	ACNGT	2 cut(s)	269, 285
HpyCH4IV	ACGT	2 cut(s)	786, 998
HpyCH4V	TGCA	4 cut(s)	39, 453, 873, 1142
HpyF10VI	GCNNNNNNNGC	3 cut(s)	155, 187, 333
HpyF3I	CTNAG	1 cut(s)	580
HpySE526I	ACGT	2 cut(s)	786, 998
Hsp92I	GRCGYC	1 cut(s)	726
Hsp92II	CATG	5 cut(s)	412, 664, 676, 740, 949
HspAI	GCGC	3 cut(s)	334, 336, 367
Ksp22I	TGATCA	2 cut(s)	423, 1027
Kzo9I	GATC	7 cut(s)	151, 239, 423, 675, 775, 922, 1027
LmnI	GCTCC	1 cut(s)	364
Lsp1109I	GCAGC	5 cut(s)	92, 193, 196, 199, 914
LweI	GCATC	4 cut(s)	739, 882, 1046, 1129
MaeI	CTAG	1 cut(s)	840
MaeII	ACGT	2 cut(s)	786, 998
MaeIII	GTNAC	3 cut(s)	91, 352, 727
MalI	GATC	7 cut(s)	153, 241, 425, 677, 777, 924, 1029
MboI	GATC	7 cut(s)	151, 239, 423, 675, 775, 922, 1027
MboII	GAAGA	7 cut(s)	482, 485, 520, 677, 899, 1142, 1162
MfeI	CAATTG	2 cut(s)	25, 34
MluCI	AATT	9 cut(s)	25, 34, 223, 694, 768, 867, 966, 1032, 1154
MlyI	GAGTC	2 cut(s)	490, 585
MmeI	TCCRAC	2 cut(s)	95, 619
Mph1103I	ATGCAT	1 cut(s)	1144
MseI	TTAA	5 cut(s)	123, 222, 311, 972, 1044
MslI	CAYNNNNRTG	1 cut(s)	14
MspA1I	CMGCKG	2 cut(s)	149, 216
MspR9I	CCNGG	2 cut(s)	362, 551
MunI	CAATTG	2 cut(s)	25, 34
Mva1269I	GAATGC	1 cut(s)	453
MvaI	CCWGG	2 cut(s)	362, 551
MvnI	CGCG	1 cut(s)	336
MwoI	GCNNNNNNNGC	3 cut(s)	155, 187, 333
NdeII	GATC	7 cut(s)	151, 239, 423, 675, 775, 922, 1027
NlaIII	CATG	5 cut(s)	412, 664, 676, 740, 949
NlaIV	GGNNCC	2 cut(s)	548, 943
NmuCI	GTSAC	2 cut(s)	352, 727
NsiI	ATGCAT	1 cut(s)	1144
NspI	RCATGY	1 cut(s)	740
PauI	GCGCGC	1 cut(s)	334
PceI	AGGCCT	1 cut(s)	826
PcsI	WCGNNNNNNNCGW	1 cut(s)	633
PctI	GAATGC	1 cut(s)	453
PfeI	GAWTC	2 cut(s)	560, 1071
PkrI	GCNGC	5 cut(s)	107, 183, 186, 189, 904
PleI	GAGTC	2 cut(s)	490, 585
PpsI	GAGTC	2 cut(s)	490, 585
PshBI	ATTAAT	2 cut(s)	222, 1044
Psp6I	CCWGG	2 cut(s)	360, 549
PspFI	CCCAGC	1 cut(s)	159
PspGI	CCWGG	2 cut(s)	360, 549
PspN4I	GGNNCC	2 cut(s)	548, 943
PstNI	CAGNNNCTG	1 cut(s)	882
PteI	GCGCGC	1 cut(s)	334
PvuII	CAGCTG	2 cut(s)	149, 216
RsaI	GTAC	3 cut(s)	374, 806, 850
RsaNI	GTAC	3 cut(s)	373, 805, 849
RseI	CAYNNNNRTG	1 cut(s)	14
SaqAI	TTAA	5 cut(s)	123, 222, 311, 972, 1044
SatI	GCNGC	5 cut(s)	106, 182, 185, 188, 903
Sau3AI	GATC	7 cut(s)	151, 239, 423, 675, 775, 922, 1027
SchI	GAGTC	2 cut(s)	490, 585
ScrFI	CCNGG	2 cut(s)	362, 551
SfaNI	GCATC	4 cut(s)	739, 882, 1046, 1129
SmiMI	CAYNNNNRTG	1 cut(s)	14
SmlI	CTYRAG	2 cut(s)	716, 1075
SmoI	CTYRAG	2 cut(s)	716, 1075
Sse9I	AATT	9 cut(s)	25, 34, 223, 694, 768, 867, 966, 1032, 1154
SseBI	AGGCCT	1 cut(s)	826
SsiI	CCGC	1 cut(s)	348
SspMI	CTAG	1 cut(s)	840
StuI	AGGCCT	1 cut(s)	826
StyD4I	CCNGG	2 cut(s)	360, 549
TaaI	ACNGT	2 cut(s)	269, 285
TaiI	ACGT	2 cut(s)	789, 1001
TaqI	TCGA	5 cut(s)	633, 925, 1014, 1090, 1137
TasI	AATT	9 cut(s)	25, 34, 223, 694, 768, 867, 966, 1032, 1154
TatI	WGTACW	2 cut(s)	372, 848
TfiI	GAWTC	2 cut(s)	560, 1071
Tru1I	TTAA	5 cut(s)	123, 222, 311, 972, 1044
Tru9I	TTAA	5 cut(s)	123, 222, 311, 972, 1044
TscAI	CASTG	1 cut(s)	883
TseFI	GTSAC	2 cut(s)	352, 727
TseI	GCWGC	5 cut(s)	105, 181, 184, 187, 902
Tsp45I	GTSAC	2 cut(s)	352, 727
TspDTI	ATGAA	3 cut(s)	425, 649, 950
TspGWI	ACGGA	1 cut(s)	603
TspRI	CASTG	1 cut(s)	883
VspI	ATTAAT	2 cut(s)	222, 1044
XapI	RAATTY	2 cut(s)	1032, 1154
XceI	RCATGY	1 cut(s)	740
XmiI	GTMKAC	1 cut(s)	789
XspI	CTAG	1 cut(s)	840
Zsp2I	ATGCAT	1 cut(s)	1144

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.