Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Contig00518

Orthogroup ID

OG0006934

Physical Location & Seq

Genomic Coordinates Reverse (-)

10995 .. 12798

Gene Structure 1804 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw0G011900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1176 bp

ATGGGAAGCACAACAATGACCACCAATTGTAGTAATTGCAAGACGAGGCTTCCTCATCTAACCTCTCATCCAACCTCCCCAATTCCCCGTGTTACTCAATATTATCGCTGCTTCTGTGGTTATGTTAATCTGATTGAGACGACCAAGAAAGCTGATCTTGCCCGGCACCACCACGAAGGTCAGCAGCAGAAGGATAGCCATCGGGGACGAGCTTCCAGCTGGATTAATTGGCTTATAAAGGGATCATCACCATCATCGTCGTCCAAGAACTGTAAATCCCCATCACCGTCACCGTCATCGTCATCGTCATCAACCAGCTTAATAAAAAGCTGTGGCAGAAAGCGCGCACTTCTTTGCGGTGTGACATACCAGGCGCGCAAGTACAAACTCAAAGGCACTTACAATGACGTCAATAACATGAAACACTTGTTGATCAACACCTTTTGTTTTCCAGCCGACTGCATTCGCATACTATCAGAAGAAGAAGGGCAACCGAAAGAGCTGACTCCCACAAAGAAGAACATAGAGAAATCCCTGAAATGGCTTGTGGAGGGGTGCCAGGCAGGAGATTCGTTGGTGTTCTACTTCTCAGGACACGGACTCCGACAGCCCGATTTCATAGACGACGACGTTGACGGGTTCGACGAGACTATTTGCCCTCTTGATTTCATGGAAGAGGGCATGATCCTTGACAATGAAATCAATTCAACCATCGTTCACCCACTCAAGGAGGGCGTCACACTGCATGCTATCGTTGATGCTTGTCATAGTGGAACAATTCTTGATCTACTCTACGTCTACGACCATAAAGGGAACAAGTGGAAGGATAATAGTCCTCCTTCTGGTGCTAGGAAAAGTACAAGTGGAGGGTTGGCAATTTGCATCAGTGCCTGCGAAGACGATAAAATGGCAGCAGATACAACTGCTTTTTATCGAAATGTAATGAATGGTGCCATGACATACATTCTTATTGAAATTATTAAGAACCACTCTGGTAAAGGCATTACGTATGGGGAACTGCTCGACTTGATGTGTGATCAAATTCAAAGGATTAATGGGGATAGATGCCTCAACTCCAGAATCTTGAGAAAAGTTTTTCGACCCAAAATCATTCAGCAACCTTTATTGTCATCGTCCGAAGACTTCGATGTATACAAGAAGAAATTTCTCTTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004175 GO:0004197 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008234 GO:0010941 GO:0010942 GO:0016787 GO:0019538 GO:0043067 GO:0043068 GO:0043170 GO:0044238 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0065007 GO:0070011 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_C14

Protein Analysis

391

Amino Acids

43.72

Weight (kDa)

8.58

Isoelectric Point (pI)

45.99

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_C14	PF00656	113 - 377	4.5e-30	Caspase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006934)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g28030 FvH4_5g28030
malus_domestica	MD05G1043500.v1.1 MD05G1043900.v1.1 MD10G1050900.v1.1
prunus_persica	Prupe.8G062700_v2.0.a1 Prupe.8G062700_v2.0.a1 Prupe.8G062700_v2.0.a1 Prupe.8G062700_v2.0.a1 Prupe.8G062700_v2.0.a1
pyrus_communis	pycom05g03590 pycom05g03600 pycom10g03580
rosa_chinensis	RchiOBHm_Chr6g0271771 RchiOBHm_Chr6g0271791
rosa_laevigata	RLG00000013716 RLG00000013731
rosa_multiflora	Rmu_sc0002396.1_g000009
rosa_roxburghii	Rroxscaffold_7G00196660
rosa_rugosa	Rorug06G0062400
rosa_samantha	Rh6BG186100 Rh6CG180800 Rh6CG181700
rosa_wichuraiana	Rw0G011900 Rw6G015540 Rw6G015550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	236
AatII	GACGTC	1 cut(s)	411
AccB1I	GGYRCC	3 cut(s)	165, 555, 950
AccI	GTMKAC	2 cut(s)	798, 1152
AccII	CGCG	2 cut(s)	345, 376
AciI	CCGC	1 cut(s)	357
AclWI	GGATC	2 cut(s)	250, 679
AcsI	RAATTY	2 cut(s)	1041, 1163
AcyI	GRCGYC	2 cut(s)	408, 735
AfaI	GTAC	2 cut(s)	383, 859
AfiI	CCNNNNNNNGG	3 cut(s)	540, 727, 842
AgsI	TTSAA	3 cut(s)	708, 974, 1046
AjnI	CCWGG	2 cut(s)	369, 558
AloI	GAACNNNNNNTCC	2 cut(s)	260, 292
AluBI	AGCT	6 cut(s)	152, 212, 219, 318, 330, 502
AluI	AGCT	6 cut(s)	152, 212, 219, 318, 330, 502
Alw26I	GTCTC	2 cut(s)	131, 641
AlwI	GGATC	2 cut(s)	250, 679
AlwNI	CAGNNNCTG	1 cut(s)	891
ApeKI	GCWGC	3 cut(s)	108, 184, 911
ApoI	RAATTY	2 cut(s)	1041, 1163
AseI	ATTAAT	2 cut(s)	225, 1053
AspLEI	GCGC	4 cut(s)	345, 347, 376, 378
AsuC2I	CCSGG	1 cut(s)	163
AsuHPI	GGTGA	4 cut(s)	240, 276, 282, 710
BanI	GGYRCC	3 cut(s)	165, 555, 950
BbsI	GAAGAC	2 cut(s)	903, 1146
BbvI	GCAGC	3 cut(s)	95, 196, 923
BccI	CCATC	4 cut(s)	207, 259, 289, 719
BcgI	CGANNNNNNTGC	2 cut(s)	552, 586
BciT130I	CCWGG	2 cut(s)	371, 560
BclI	TGATCA	2 cut(s)	432, 1036
BcnI	CCSGG	1 cut(s)	163
BcoDI	GTCTC	2 cut(s)	131, 641
BfaI	CTAG	1 cut(s)	849
BisI	GCNGC	3 cut(s)	109, 185, 912
BlsI	GCNGC	3 cut(s)	110, 186, 913
Bme1390I	CCNGG	3 cut(s)	163, 371, 560
BmiI	GGNNCC	3 cut(s)	167, 557, 952
BmrFI	CCNGG	3 cut(s)	163, 371, 560
BmsI	GCATC	3 cut(s)	748, 891, 1055
BpiI	GAAGAC	2 cut(s)	903, 1146
BplI	GAGNNNNNCTC	2 cut(s)	37, 69
BpmI	CTGGAG	1 cut(s)	1060
BpuEI	CTTGAG	2 cut(s)	710, 1105
BpuMI	CCSGG	1 cut(s)	163
BsaAI	YACGTR	1 cut(s)	1008
BsaBI	GATNNNNATC	1 cut(s)	198
BsaHI	GRCGYC	2 cut(s)	408, 735
BsaXI	ACNNNNNCTCC	2 cut(s)	585, 615
Bsc4I	CCNNNNNNNGG	3 cut(s)	540, 727, 842
Bse8I	GATNNNNATC	1 cut(s)	198
BseBI	CCWGG	2 cut(s)	371, 560
BseGI	GGATG	1 cut(s)	67
BseJI	GATNNNNATC	1 cut(s)	198
BseLI	CCNNNNNNNGG	3 cut(s)	540, 727, 842
BseMII	CTCAG	1 cut(s)	603
BsePI	GCGCGC	2 cut(s)	343, 374
BseXI	GCAGC	3 cut(s)	95, 196, 923
Bsh1236I	CGCG	2 cut(s)	345, 376
BshNI	GGYRCC	3 cut(s)	165, 555, 950
BsiSI	CCGG	1 cut(s)	163
BslFI	GGGAC	1 cut(s)	219
BslI	CCNNNNNNNGG	3 cut(s)	540, 727, 842
BsmAI	GTCTC	2 cut(s)	131, 641
BsmBI	CGTCTC	1 cut(s)	131
BsmFI	GGGAC	1 cut(s)	219
BsmI	GAATGC	1 cut(s)	462
Bsp143I	GATC	6 cut(s)	154, 242, 432, 684, 784, 1036
BspACI	CCGC	1 cut(s)	357
BspCNI	CTCAG	1 cut(s)	602
BspFNI	CGCG	2 cut(s)	345, 376
BspLI	GGNNCC	3 cut(s)	167, 557, 952
BspPI	GGATC	2 cut(s)	250, 679
BspT107I	GGYRCC	3 cut(s)	165, 555, 950
BssHII	GCGCGC	2 cut(s)	343, 374
BssMI	GATC	6 cut(s)	154, 242, 432, 684, 784, 1036
BssNAI	GTATAC	1 cut(s)	1153
BssNI	GRCGYC	2 cut(s)	408, 735
Bst1107I	GTATAC	1 cut(s)	1153
Bst2UI	CCWGG	2 cut(s)	371, 560
Bst4CI	ACNGT	3 cut(s)	272, 288, 294
Bst6I	CTCTTC	1 cut(s)	669
BstACI	GRCGYC	2 cut(s)	408, 735
BstBAI	YACGTR	1 cut(s)	1008
BstC8I	GCNNGC	4 cut(s)	345, 376, 747, 892
BstDEI	CTNAG	1 cut(s)	589
BstF5I	GGATG	1 cut(s)	67
BstFNI	CGCG	2 cut(s)	345, 376
BstHHI	GCGC	4 cut(s)	345, 347, 376, 378
BstKTI	GATC	6 cut(s)	157, 245, 435, 687, 787, 1039
BstMAI	GTCTC	2 cut(s)	131, 641
BstMBI	GATC	6 cut(s)	154, 242, 432, 684, 784, 1036
BstMWI	GCNNNNNNNGC	2 cut(s)	158, 342
BstNI	CCWGG	2 cut(s)	371, 560
BstNSI	RCATGY	1 cut(s)	749
BstSCI	CCNGG	3 cut(s)	161, 369, 558
BstSNI	TACGTA	1 cut(s)	1008
BstUI	CGCG	2 cut(s)	345, 376
BstV1I	GCAGC	3 cut(s)	95, 196, 923
BstV2I	GAAGAC	2 cut(s)	903, 1146
BstZ17I	GTATAC	1 cut(s)	1153
BtsCI	GGATG	1 cut(s)	67
BtsI	GCAGTG	1 cut(s)	740
BtsIMutI	CAGTG	2 cut(s)	740, 892
Cac8I	GCNNGC	4 cut(s)	345, 376, 747, 892
CaiI	CAGNNNCTG	1 cut(s)	891
CfoI	GCGC	4 cut(s)	345, 347, 376, 378
CseI	GACGC	1 cut(s)	724
Csp6I	GTAC	2 cut(s)	382, 858
CviAII	CATG	5 cut(s)	418, 670, 682, 746, 955
CviQI	GTAC	2 cut(s)	382, 858
DdeI	CTNAG	1 cut(s)	589
DpnI	GATC	6 cut(s)	156, 244, 434, 686, 786, 1038
DpnII	GATC	6 cut(s)	154, 242, 432, 684, 784, 1036
Eam1104I	CTCTTC	1 cut(s)	669
EarI	CTCTTC	1 cut(s)	669
Eco105I	TACGTA	1 cut(s)	1008
EcoRII	CCWGG	2 cut(s)	369, 558
Esp3I	CGTCTC	1 cut(s)	131
FaeI	CATG	5 cut(s)	421, 673, 685, 749, 958
FalI	AAGNNNNNCTT	2 cut(s)	141, 173
FaqI	GGGAC	1 cut(s)	219
FatI	CATG	5 cut(s)	417, 669, 681, 745, 954
FbaI	TGATCA	2 cut(s)	432, 1036
FblI	GTMKAC	2 cut(s)	798, 1152
Fnu4HI	GCNGC	3 cut(s)	109, 185, 912
FokI	GGATG	1 cut(s)	54
Fsp4HI	GCNGC	3 cut(s)	109, 185, 912
FspBI	CTAG	1 cut(s)	849
GlaI	GCGC	4 cut(s)	344, 346, 375, 377
GluI	GCNGC	3 cut(s)	109, 185, 912
GsuI	CTGGAG	1 cut(s)	1060
HapII	CCGG	1 cut(s)	163
HgaI	GACGC	1 cut(s)	724
HhaI	GCGC	4 cut(s)	345, 347, 376, 378
Hin1I	GRCGYC	2 cut(s)	408, 735
Hin1II	CATG	5 cut(s)	421, 673, 685, 749, 958
Hin6I	GCGC	4 cut(s)	343, 345, 374, 376
HinP1I	GCGC	4 cut(s)	343, 345, 374, 376
HincII	GTYRAC	1 cut(s)	634
HindII	GTYRAC	1 cut(s)	634
HinfI	GANTC	4 cut(s)	505, 569, 600, 1080
HpaII	CCGG	1 cut(s)	163
HphI	GGTGA	4 cut(s)	240, 276, 282, 710
Hpy166II	GTNNAC	4 cut(s)	634, 718, 799, 1153
Hpy188I	TCNGA	4 cut(s)	132, 478, 605, 1138
Hpy188III	TCNNGA	5 cut(s)	591, 662, 782, 1077, 1084
Hpy8I	GTNNAC	4 cut(s)	634, 718, 799, 1153
Hpy99I	CGWCG	4 cut(s)	262, 629, 632, 647
HpyAV	CCTTC	5 cut(s)	170, 184, 479, 817, 849
HpyCH4III	ACNGT	3 cut(s)	272, 288, 294
HpyCH4IV	ACGT	4 cut(s)	408, 630, 795, 1007
HpyCH4V	TGCA	4 cut(s)	39, 462, 745, 882
HpyF10VI	GCNNNNNNNGC	2 cut(s)	158, 342
HpyF3I	CTNAG	1 cut(s)	589
HpySE526I	ACGT	4 cut(s)	408, 630, 795, 1007
Hsp92I	GRCGYC	2 cut(s)	408, 735
Hsp92II	CATG	5 cut(s)	421, 673, 685, 749, 958
HspAI	GCGC	4 cut(s)	343, 345, 374, 376
Ksp22I	TGATCA	2 cut(s)	432, 1036
Kzo9I	GATC	6 cut(s)	154, 242, 432, 684, 784, 1036
Lsp1109I	GCAGC	3 cut(s)	95, 196, 923
LweI	GCATC	3 cut(s)	748, 891, 1055
MaeI	CTAG	1 cut(s)	849
MaeII	ACGT	4 cut(s)	408, 630, 795, 1007
MaeIII	GTNAC	4 cut(s)	91, 288, 361, 736
MalI	GATC	6 cut(s)	156, 244, 434, 686, 786, 1038
MboI	GATC	6 cut(s)	154, 242, 432, 684, 784, 1036
MboII	GAAGA	7 cut(s)	491, 494, 529, 686, 908, 1151, 1171
MfeI	CAATTG	1 cut(s)	25
MlyI	GAGTC	2 cut(s)	499, 594
MmeI	TCCRAC	2 cut(s)	95, 628
MseI	TTAA	5 cut(s)	126, 225, 320, 981, 1053
MslI	CAYNNNNRTG	1 cut(s)	14
MspA1I	CMGCKG	1 cut(s)	219
MspI	CCGG	1 cut(s)	163
MspR9I	CCNGG	3 cut(s)	163, 371, 560
MunI	CAATTG	1 cut(s)	25
Mva1269I	GAATGC	1 cut(s)	462
MvaI	CCWGG	2 cut(s)	371, 560
MvnI	CGCG	2 cut(s)	345, 376
MwoI	GCNNNNNNNGC	2 cut(s)	158, 342
NciI	CCSGG	1 cut(s)	163
NdeII	GATC	6 cut(s)	154, 242, 432, 684, 784, 1036
NlaIII	CATG	5 cut(s)	421, 673, 685, 749, 958
NlaIV	GGNNCC	3 cut(s)	167, 557, 952
NmuCI	GTSAC	3 cut(s)	288, 361, 736
NspI	RCATGY	1 cut(s)	749
PaeI	GCATGC	1 cut(s)	749
PauI	GCGCGC	2 cut(s)	343, 374
PcsI	WCGNNNNNNNCGW	1 cut(s)	642
PctI	GAATGC	1 cut(s)	462
PfeI	GAWTC	2 cut(s)	569, 1080
PkrI	GCNGC	3 cut(s)	110, 186, 913
PleI	GAGTC	2 cut(s)	499, 594
PpsI	GAGTC	2 cut(s)	499, 594
Ppu21I	YACGTR	1 cut(s)	1008
PshBI	ATTAAT	2 cut(s)	225, 1053
PsiI	TTATAA	1 cut(s)	236
Psp6I	CCWGG	2 cut(s)	369, 558
PspGI	CCWGG	2 cut(s)	369, 558
PspN4I	GGNNCC	3 cut(s)	167, 557, 952
PstNI	CAGNNNCTG	1 cut(s)	891
PteI	GCGCGC	2 cut(s)	343, 374
PvuII	CAGCTG	1 cut(s)	219
RsaI	GTAC	2 cut(s)	383, 859
RsaNI	GTAC	2 cut(s)	382, 858
RseI	CAYNNNNRTG	1 cut(s)	14
SaqAI	TTAA	5 cut(s)	126, 225, 320, 981, 1053
SatI	GCNGC	3 cut(s)	109, 185, 912
Sau3AI	GATC	6 cut(s)	154, 242, 432, 684, 784, 1036
SchI	GAGTC	2 cut(s)	499, 594
ScrFI	CCNGG	3 cut(s)	163, 371, 560
SfaNI	GCATC	3 cut(s)	748, 891, 1055
SmiMI	CAYNNNNRTG	1 cut(s)	14
SmlI	CTYRAG	2 cut(s)	725, 1084
SmoI	CTYRAG	2 cut(s)	725, 1084
SnaBI	TACGTA	1 cut(s)	1008
SphI	GCATGC	1 cut(s)	749
SsiI	CCGC	1 cut(s)	357
SspI	AATATT	1 cut(s)	101
SspMI	CTAG	1 cut(s)	849
StyD4I	CCNGG	3 cut(s)	161, 369, 558
TaaI	ACNGT	3 cut(s)	272, 288, 294
TaiI	ACGT	4 cut(s)	411, 633, 798, 1010
TaqI	TCGA	5 cut(s)	642, 934, 1023, 1099, 1146
TatI	WGTACW	2 cut(s)	381, 857
TfiI	GAWTC	2 cut(s)	569, 1080
Tru1I	TTAA	5 cut(s)	126, 225, 320, 981, 1053
Tru9I	TTAA	5 cut(s)	126, 225, 320, 981, 1053
TscAI	CASTG	2 cut(s)	747, 892
TseFI	GTSAC	3 cut(s)	288, 361, 736
TseI	GCWGC	3 cut(s)	108, 184, 911
Tsp45I	GTSAC	3 cut(s)	288, 361, 736
TspDTI	ATGAA	5 cut(s)	434, 607, 658, 711, 959
TspGWI	ACGGA	1 cut(s)	612
TspRI	CASTG	2 cut(s)	747, 892
VspI	ATTAAT	2 cut(s)	225, 1053
XapI	RAATTY	2 cut(s)	1041, 1163
XceI	RCATGY	1 cut(s)	749
XmiI	GTMKAC	2 cut(s)	798, 1152
XspI	CTAG	1 cut(s)	849
ZraI	GACGTC	1 cut(s)	409

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.