Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0006934

Physical Location & Seq

Genomic Coordinates Forward (+)

31677084 .. 31679910

Gene Structure 2827 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ24377

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1164 bp

ATGGGAAGCACAACAATGACCACCAATTGTAGCAATTGCAAGACGAGGCTTCCTCATCTAACCTCTCATTCAACCTCACCAATACCCCGTGTTACTCAATATCGCTGCTTCTGTGGTTATGTTAATCTGATTGAGACGACCAAGCCAGCTCTTGCCCAGCACCACCACGAAGGTCAGCAGCTGCAGCATAGCCATCGGAGACGAGCTTCCAGCTGGATTAATTCGCATATAAAGGGATCATCACCATCATCGTCGTCCAAGAACTGTAAACCCCTATCACCGTCATCGTCATCGTCATCAACCAGCTTAATAAAAAGCTGTGGCAGAAAGCGCGCACTTCTTTGCGGAGTGACATACCAGGAGCGCAAGTACAAACTCAAAGGCACTTACAATGATGTCAATAACATGAAACACTTGTTGATCAACACCTTTTGTTTTCCACCCGACTGCATTCGCATACTATCAGAAGAAGAAGGGCAACCGAAAGAGCTGACTCCCACAAAGAAGAACATAGAGAAATCCCTGAAATGGCTTGTGGAGGGGTGCCAGGCAGGAGATTCGTTGGTGTTCTACTTCTCAGGACACGGACTCCGACAGCCCGATTTCAAAGACGACGAGGTTGACGGGTTCGACGAGACTATATGCCCTCTTGATTTCATGGAAGAGGGCATGATCCTTGACAATGATATCAATTCAACCATCGTTCACCCACTCAAGGAGGGCGTCACACTACATGCTATCGTTGATGCTTGTCATAGTGGAACAATTCTTGATCTACTCTACGTCTACGACCATAAAGGGAACAAGTGGAAGGATAATAGTCCTCCTTCTGGTGCTAGGAAAAGTACAAGTGGAGGGTTGGCAATTTGCATCAGTGCCTGCGAAGACGATAAAATGGCAGCAGATACAACTGCTTTTGATCGAAATGTGATGAATGGTGCCATGACATACACTCTTATTGAAATTATTAAGAAGCACTCTAGTAAAGGCATAACGTATGGAGAACTGCTCGACTTGATGTTTGATCAAATTCAAAGGATTAATGGGGATAGATGCCTCAACTCCAGAATCTTGAGAAAAGTTTTTCGACACAAAATCATTCAGCAACCTTTATTGTCATCGTCCGAAGACTTCGATGTATACAAGAAGAAATTTCTCTTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004175 GO:0004197 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008234 GO:0010941 GO:0010942 GO:0016787 GO:0019538 GO:0043067 GO:0043068 GO:0043170 GO:0044238 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0065007 GO:0070011 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_C14

Protein Analysis

387

Amino Acids

43.42

Weight (kDa)

8.62

Isoelectric Point (pI)

46.58

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_C14	PF00656	109 - 345	9.7e-31	Caspase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006934)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g28030 FvH4_5g28030
malus_domestica	MD05G1043500.v1.1 MD05G1043900.v1.1 MD10G1050900.v1.1
prunus_persica	Prupe.8G062700_v2.0.a1 Prupe.8G062700_v2.0.a1 Prupe.8G062700_v2.0.a1 Prupe.8G062700_v2.0.a1 Prupe.8G062700_v2.0.a1
pyrus_communis	pycom05g03590 pycom05g03600 pycom10g03580
rosa_chinensis	RchiOBHm_Chr6g0271771 RchiOBHm_Chr6g0271791
rosa_laevigata	RLG00000013716 RLG00000013731
rosa_multiflora	Rmu_sc0002396.1_g000009
rosa_roxburghii	Rroxscaffold_7G00196660
rosa_rugosa	Rorug06G0062400
rosa_samantha	Rh6BG186100 Rh6CG180800 Rh6CG181700
rosa_wichuraiana	Rw0G011900 Rw6G015540 Rw6G015550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	543, 938
AccI	GTMKAC	2 cut(s)	786, 1140
AccII	CGCG	1 cut(s)	333
AciI	CCGC	1 cut(s)	345
AclWI	GGATC	2 cut(s)	244, 667
AcsI	RAATTY	2 cut(s)	1029, 1151
AcyI	GRCGYC	1 cut(s)	723
AfaI	GTAC	2 cut(s)	371, 847
AfiI	CCNNNNNNNGG	3 cut(s)	528, 715, 830
AgsI	TTSAA	5 cut(s)	72, 607, 696, 962, 1034
AjnI	CCWGG	2 cut(s)	357, 546
AluBI	AGCT	7 cut(s)	149, 181, 206, 213, 306, 318, 490
AluI	AGCT	7 cut(s)	149, 181, 206, 213, 306, 318, 490
Alw26I	GTCTC	3 cut(s)	128, 193, 629
AlwI	GGATC	2 cut(s)	244, 667
AlwNI	CAGNNNCTG	2 cut(s)	181, 879
ApeKI	GCWGC	5 cut(s)	105, 178, 181, 184, 899
ApoI	RAATTY	2 cut(s)	1029, 1151
ArsI	GACNNNNNNTTYG	2 cut(s)	1004, 1036
AseI	ATTAAT	2 cut(s)	219, 1041
AspLEI	GCGC	3 cut(s)	333, 335, 366
AsuHPI	GGTGA	4 cut(s)	69, 234, 270, 698
BanI	GGYRCC	2 cut(s)	543, 938
BbsI	GAAGAC	2 cut(s)	891, 1134
BbvI	GCAGC	5 cut(s)	92, 168, 190, 196, 911
BccI	CCATC	3 cut(s)	201, 253, 707
BcgI	CGANNNNNNTGC	4 cut(s)	176, 210, 540, 574
BciT130I	CCWGG	2 cut(s)	359, 548
BclI	TGATCA	2 cut(s)	420, 1024
BcoDI	GTCTC	3 cut(s)	128, 193, 629
BfaI	CTAG	2 cut(s)	837, 981
BfmI	CTRYAG	1 cut(s)	182
BisI	GCNGC	5 cut(s)	106, 179, 182, 185, 900
BlsI	GCNGC	5 cut(s)	107, 180, 183, 186, 901
Bme1390I	CCNGG	2 cut(s)	359, 548
BmiI	GGNNCC	2 cut(s)	545, 940
BmrFI	CCNGG	2 cut(s)	359, 548
BmsI	GCATC	3 cut(s)	736, 879, 1043
BpiI	GAAGAC	2 cut(s)	891, 1134
BplI	GAGNNNNNCTC	4 cut(s)	37, 69, 993, 1025
BpmI	CTGGAG	1 cut(s)	1048
BpuEI	CTTGAG	2 cut(s)	698, 1093
BsaHI	GRCGYC	1 cut(s)	723
BsaXI	ACNNNNNCTCC	4 cut(s)	353, 383, 573, 603
Bsc4I	CCNNNNNNNGG	3 cut(s)	528, 715, 830
BseBI	CCWGG	2 cut(s)	359, 548
BseLI	CCNNNNNNNGG	3 cut(s)	528, 715, 830
BseMII	CTCAG	1 cut(s)	591
BsePI	GCGCGC	1 cut(s)	331
BseXI	GCAGC	5 cut(s)	92, 168, 190, 196, 911
BseYI	CCCAGC	1 cut(s)	156
Bsh1236I	CGCG	1 cut(s)	333
BshNI	GGYRCC	2 cut(s)	543, 938
BslI	CCNNNNNNNGG	3 cut(s)	528, 715, 830
BsmAI	GTCTC	3 cut(s)	128, 193, 629
BsmBI	CGTCTC	2 cut(s)	128, 193
BsmI	GAATGC	1 cut(s)	450
Bsp143I	GATC	6 cut(s)	236, 420, 672, 772, 919, 1024
BspACI	CCGC	1 cut(s)	345
BspCNI	CTCAG	1 cut(s)	590
BspFNI	CGCG	1 cut(s)	333
BspLI	GGNNCC	2 cut(s)	545, 940
BspMAI	CTGCAG	1 cut(s)	186
BspPI	GGATC	2 cut(s)	244, 667
BspT107I	GGYRCC	2 cut(s)	543, 938
BssHII	GCGCGC	1 cut(s)	331
BssMI	GATC	6 cut(s)	236, 420, 672, 772, 919, 1024
BssNAI	GTATAC	1 cut(s)	1141
BssNI	GRCGYC	1 cut(s)	723
Bst1107I	GTATAC	1 cut(s)	1141
Bst2UI	CCWGG	2 cut(s)	359, 548
Bst4CI	ACNGT	2 cut(s)	266, 282
Bst6I	CTCTTC	1 cut(s)	657
BstACI	GRCGYC	1 cut(s)	723
BstC8I	GCNNGC	3 cut(s)	147, 333, 880
BstDEI	CTNAG	1 cut(s)	577
BstFNI	CGCG	1 cut(s)	333
BstHHI	GCGC	3 cut(s)	333, 335, 366
BstKTI	GATC	6 cut(s)	239, 423, 675, 775, 922, 1027
BstMAI	GTCTC	3 cut(s)	128, 193, 629
BstMBI	GATC	6 cut(s)	236, 420, 672, 772, 919, 1024
BstMWI	GCNNNNNNNGC	2 cut(s)	184, 330
BstNI	CCWGG	2 cut(s)	359, 548
BstNSI	RCATGY	1 cut(s)	737
BstSCI	CCNGG	2 cut(s)	357, 546
BstSFI	CTRYAG	1 cut(s)	182
BstUI	CGCG	1 cut(s)	333
BstV1I	GCAGC	5 cut(s)	92, 168, 190, 196, 911
BstV2I	GAAGAC	2 cut(s)	891, 1134
BstZ17I	GTATAC	1 cut(s)	1141
BtsIMutI	CAGTG	1 cut(s)	880
Cac8I	GCNNGC	3 cut(s)	147, 333, 880
CaiI	CAGNNNCTG	2 cut(s)	181, 879
CfoI	GCGC	3 cut(s)	333, 335, 366
CseI	GACGC	1 cut(s)	712
Csp6I	GTAC	2 cut(s)	370, 846
CviAII	CATG	5 cut(s)	406, 658, 670, 734, 943
CviQI	GTAC	2 cut(s)	370, 846
DdeI	CTNAG	1 cut(s)	577
DpnI	GATC	6 cut(s)	238, 422, 674, 774, 921, 1026
DpnII	GATC	6 cut(s)	236, 420, 672, 772, 919, 1024
Eam1104I	CTCTTC	1 cut(s)	657
EarI	CTCTTC	1 cut(s)	657
Eco32I	GATATC	1 cut(s)	688
EcoRII	CCWGG	2 cut(s)	357, 546
EcoRV	GATATC	1 cut(s)	688
Esp3I	CGTCTC	2 cut(s)	128, 193
FaeI	CATG	5 cut(s)	409, 661, 673, 737, 946
FatI	CATG	5 cut(s)	405, 657, 669, 733, 942
FbaI	TGATCA	2 cut(s)	420, 1024
FblI	GTMKAC	2 cut(s)	786, 1140
Fnu4HI	GCNGC	5 cut(s)	106, 179, 182, 185, 900
Fsp4HI	GCNGC	5 cut(s)	106, 179, 182, 185, 900
FspBI	CTAG	2 cut(s)	837, 981
GlaI	GCGC	3 cut(s)	332, 334, 365
GluI	GCNGC	5 cut(s)	106, 179, 182, 185, 900
GsaI	CCCAGC	1 cut(s)	160
GsuI	CTGGAG	1 cut(s)	1048
HgaI	GACGC	1 cut(s)	712
HhaI	GCGC	3 cut(s)	333, 335, 366
Hin1I	GRCGYC	1 cut(s)	723
Hin1II	CATG	5 cut(s)	409, 661, 673, 737, 946
Hin6I	GCGC	3 cut(s)	331, 333, 364
HinP1I	GCGC	3 cut(s)	331, 333, 364
HincII	GTYRAC	1 cut(s)	622
HindII	GTYRAC	1 cut(s)	622
HinfI	GANTC	4 cut(s)	493, 557, 588, 1068
HphI	GGTGA	4 cut(s)	69, 234, 270, 698
Hpy166II	GTNNAC	5 cut(s)	269, 622, 706, 787, 1141
Hpy188I	TCNGA	5 cut(s)	129, 198, 466, 593, 1126
Hpy188III	TCNNGA	5 cut(s)	579, 650, 770, 1065, 1072
Hpy8I	GTNNAC	5 cut(s)	269, 622, 706, 787, 1141
Hpy99I	CGWCG	3 cut(s)	256, 617, 635
HpyAV	CCTTC	4 cut(s)	164, 467, 805, 837
HpyCH4III	ACNGT	2 cut(s)	266, 282
HpyCH4IV	ACGT	2 cut(s)	783, 995
HpyCH4V	TGCA	4 cut(s)	39, 184, 450, 870
HpyF10VI	GCNNNNNNNGC	2 cut(s)	184, 330
HpyF3I	CTNAG	1 cut(s)	577
HpySE526I	ACGT	2 cut(s)	783, 995
Hsp92I	GRCGYC	1 cut(s)	723
Hsp92II	CATG	5 cut(s)	409, 661, 673, 737, 946
HspAI	GCGC	3 cut(s)	331, 333, 364
Ksp22I	TGATCA	2 cut(s)	420, 1024
Kzo9I	GATC	6 cut(s)	236, 420, 672, 772, 919, 1024
LmnI	GCTCC	1 cut(s)	361
Lsp1109I	GCAGC	5 cut(s)	92, 168, 190, 196, 911
LweI	GCATC	3 cut(s)	736, 879, 1043
MaeI	CTAG	2 cut(s)	837, 981
MaeII	ACGT	2 cut(s)	783, 995
MaeIII	GTNAC	3 cut(s)	91, 349, 724
MalI	GATC	6 cut(s)	238, 422, 674, 774, 921, 1026
MboI	GATC	6 cut(s)	236, 420, 672, 772, 919, 1024
MboII	GAAGA	7 cut(s)	479, 482, 517, 674, 896, 1139, 1159
MfeI	CAATTG	2 cut(s)	25, 34
MluCI	AATT	9 cut(s)	25, 34, 220, 691, 765, 864, 963, 1029, 1151
MlyI	GAGTC	2 cut(s)	487, 582
MmeI	TCCRAC	1 cut(s)	616
MseI	TTAA	5 cut(s)	123, 219, 308, 969, 1041
MslI	CAYNNNNRTG	1 cut(s)	14
MspA1I	CMGCKG	2 cut(s)	181, 213
MspR9I	CCNGG	2 cut(s)	359, 548
MunI	CAATTG	2 cut(s)	25, 34
Mva1269I	GAATGC	1 cut(s)	450
MvaI	CCWGG	2 cut(s)	359, 548
MvnI	CGCG	1 cut(s)	333
MwoI	GCNNNNNNNGC	2 cut(s)	184, 330
NdeII	GATC	6 cut(s)	236, 420, 672, 772, 919, 1024
NlaIII	CATG	5 cut(s)	409, 661, 673, 737, 946
NlaIV	GGNNCC	2 cut(s)	545, 940
NmuCI	GTSAC	2 cut(s)	349, 724
NspI	RCATGY	1 cut(s)	737
PauI	GCGCGC	1 cut(s)	331
PcsI	WCGNNNNNNNCGW	1 cut(s)	630
PctI	GAATGC	1 cut(s)	450
PfeI	GAWTC	2 cut(s)	557, 1068
PkrI	GCNGC	5 cut(s)	107, 180, 183, 186, 901
PleI	GAGTC	2 cut(s)	487, 582
PpsI	GAGTC	2 cut(s)	487, 582
PshBI	ATTAAT	2 cut(s)	219, 1041
Psp6I	CCWGG	2 cut(s)	357, 546
PspFI	CCCAGC	1 cut(s)	156
PspGI	CCWGG	2 cut(s)	357, 546
PspN4I	GGNNCC	2 cut(s)	545, 940
PstI	CTGCAG	1 cut(s)	186
PstNI	CAGNNNCTG	2 cut(s)	181, 879
PteI	GCGCGC	1 cut(s)	331
PvuII	CAGCTG	2 cut(s)	181, 213
RsaI	GTAC	2 cut(s)	371, 847
RsaNI	GTAC	2 cut(s)	370, 846
RseI	CAYNNNNRTG	1 cut(s)	14
SaqAI	TTAA	5 cut(s)	123, 219, 308, 969, 1041
SatI	GCNGC	5 cut(s)	106, 179, 182, 185, 900
Sau3AI	GATC	6 cut(s)	236, 420, 672, 772, 919, 1024
SchI	GAGTC	2 cut(s)	487, 582
ScrFI	CCNGG	2 cut(s)	359, 548
SfaNI	GCATC	3 cut(s)	736, 879, 1043
SfcI	CTRYAG	1 cut(s)	182
SmiMI	CAYNNNNRTG	1 cut(s)	14
SmlI	CTYRAG	2 cut(s)	713, 1072
SmoI	CTYRAG	2 cut(s)	713, 1072
Sse9I	AATT	9 cut(s)	25, 34, 220, 691, 765, 864, 963, 1029, 1151
SsiI	CCGC	1 cut(s)	345
SspMI	CTAG	2 cut(s)	837, 981
StyD4I	CCNGG	2 cut(s)	357, 546
TaaI	ACNGT	2 cut(s)	266, 282
TaiI	ACGT	2 cut(s)	786, 998
TaqI	TCGA	5 cut(s)	630, 922, 1011, 1087, 1134
TasI	AATT	9 cut(s)	25, 34, 220, 691, 765, 864, 963, 1029, 1151
TatI	WGTACW	2 cut(s)	369, 845
TfiI	GAWTC	2 cut(s)	557, 1068
Tru1I	TTAA	5 cut(s)	123, 219, 308, 969, 1041
Tru9I	TTAA	5 cut(s)	123, 219, 308, 969, 1041
TscAI	CASTG	1 cut(s)	880
TseFI	GTSAC	2 cut(s)	349, 724
TseI	GCWGC	5 cut(s)	105, 178, 181, 184, 899
Tsp45I	GTSAC	2 cut(s)	349, 724
TspDTI	ATGAA	3 cut(s)	422, 646, 947
TspGWI	ACGGA	1 cut(s)	600
TspRI	CASTG	1 cut(s)	880
VspI	ATTAAT	2 cut(s)	219, 1041
XapI	RAATTY	2 cut(s)	1029, 1151
XceI	RCATGY	1 cut(s)	737
XmiI	GTMKAC	2 cut(s)	786, 1140
XspI	CTAG	2 cut(s)	837, 981

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.