Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr6

Orthogroup ID

OG0006934

Physical Location & Seq

Genomic Coordinates Forward (+)

29889025 .. 29890828

Gene Structure 1804 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw6G015540.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1170 bp

ATGAGAAGCACAACAATGACCACCAATTGTAGCAATTGCAAGACGAGGCTTCCTCATCGAACCTCTCATCCAACCTCACCAACACCCCGTGTTACTCAATATCGCTGCTTCTGTGGTTATGTTAATCTGATTGAGACGACCAAGCCAGCTGATCTTGCGCAGCACCACCACGAAGGTCAGCAGCAGCAGCATAGCCATCGGAGACGAGCTTCCAGCTGGATTAATTCGCATATAAAGAGATCACCATCATCGTCGTCCAAGAACTGTAAACCCCCATCACCGTCACCGTCATCGTCATCGTCATCAACCAGCTTAATAAAAAGCTGTGGCAGAAAGCGCGCACTTCTTTGCGGAGTGACATACCAGGAGCGCAAGTACAAACTCAAAGGCACTTACAATGATGTCAATAACATGAAACACTTGTTGAGCAACACCTTTTGTTTTCCAGCCGACTGCATTCGCATACTATCAGAAGAAGAAGGGCAACCGAAAGAGCTGACTCCCACAAAGAAGAATATAGAGAAATCCCTGAAATGGCTTGTGGAGGGGTGCCAGGCAGGAGATTCGTTGGTGTTCTACTTCTCAGGACACGGGCTACGACAGCCCGATTTCAAAGACGACGAGGTTGACGGGTTCGACGAGACTATATGCCCTCTTGATTTCATGGAAGAGGGCATGATCCTTGACAATGATATCAATTCAACCATCGTTCACCCACTCAAGGAGGGCGTCACACTACATGCTATCGTTGATGCTTGTCATAGTGGAACAATTCTTGATCTACTCTACGTCTACGACCATAAAGGGAACAAGTGGAAGGATAATAGTCCTCCTTCTGGTGCTAGGAAAAGTACAAGTGGAGGGTTGGCAATTTGCATCAGTGCCTGCGAAGACGATAAAATGGCAGCAGATACAACTGCTTTTGATCGAAATGTAATGAATGGTGCCATGACATACATTCTTATTGAAATTATTAAGAAGCACTCTGTTGAAGGCATAACGTATGGAGAACTGCTCGACTTGATGTTTGATCAAATTCAAGGGATTAACGGGGATAGATGCCTCAACTCCAGAATCTTGAGAAAAGTTTTTCGTCGCAAAATCATTCAGCAACCTTTATTGTCATCGTCCGAAGACTTCGATGTATACAAGAAGAAATTTCTCTTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004175 GO:0004197 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008234 GO:0010941 GO:0010942 GO:0016787 GO:0019538 GO:0043067 GO:0043068 GO:0043170 GO:0044238 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0065007 GO:0070011 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_C14

Protein Analysis

389

Amino Acids

43.76

Weight (kDa)

8.62

Isoelectric Point (pI)

52.13

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_C14	PF00656	111 - 346	6.5e-30	Caspase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006934)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g28030 FvH4_5g28030
malus_domestica	MD05G1043500.v1.1 MD05G1043900.v1.1 MD10G1050900.v1.1
prunus_persica	Prupe.8G062700_v2.0.a1 Prupe.8G062700_v2.0.a1 Prupe.8G062700_v2.0.a1 Prupe.8G062700_v2.0.a1 Prupe.8G062700_v2.0.a1
pyrus_communis	pycom05g03590 pycom05g03600 pycom10g03580
rosa_chinensis	RchiOBHm_Chr6g0271771 RchiOBHm_Chr6g0271791
rosa_laevigata	RLG00000013716 RLG00000013731
rosa_multiflora	Rmu_sc0002396.1_g000009
rosa_roxburghii	Rroxscaffold_7G00196660
rosa_rugosa	Rorug06G0062400
rosa_samantha	Rh6BG186100 Rh6CG180800 Rh6CG181700
rosa_wichuraiana	Rw0G011900 Rw6G015540 Rw6G015550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	159
AccB1I	GGYRCC	2 cut(s)	549, 944
AccI	GTMKAC	2 cut(s)	792, 1146
AccII	CGCG	1 cut(s)	339
AciI	CCGC	1 cut(s)	351
AclWI	GGATC	1 cut(s)	673
AcsI	RAATTY	2 cut(s)	1035, 1157
AcyI	GRCGYC	1 cut(s)	729
AdeI	CACNNNGTG	1 cut(s)	89
AfaI	GTAC	2 cut(s)	377, 853
AfiI	CCNNNNNNNGG	3 cut(s)	534, 721, 836
AgsI	TTSAA	5 cut(s)	613, 702, 968, 992, 1040
AjnI	CCWGG	2 cut(s)	363, 552
AloI	GAACNNNNNNTCC	2 cut(s)	52, 84
AluBI	AGCT	6 cut(s)	149, 209, 216, 312, 324, 496
AluI	AGCT	6 cut(s)	149, 209, 216, 312, 324, 496
Alw26I	GTCTC	3 cut(s)	128, 196, 635
AlwI	GGATC	1 cut(s)	673
AlwNI	CAGNNNCTG	1 cut(s)	885
ApeKI	GCWGC	6 cut(s)	105, 160, 181, 184, 187, 905
ApoI	RAATTY	2 cut(s)	1035, 1157
ArsI	GACNNNNNNTTYG	2 cut(s)	1010, 1042
AseI	ATTAAT	1 cut(s)	222
AspLEI	GCGC	4 cut(s)	160, 339, 341, 372
AsuHPI	GGTGA	5 cut(s)	69, 234, 270, 276, 704
BanI	GGYRCC	2 cut(s)	549, 944
BbsI	GAAGAC	2 cut(s)	897, 1140
BbvI	GCAGC	6 cut(s)	92, 172, 193, 196, 199, 917
BccI	CCATC	4 cut(s)	204, 253, 283, 713
BcgI	CGANNNNNNTGC	4 cut(s)	179, 213, 546, 580
BciT130I	CCWGG	2 cut(s)	365, 554
BclI	TGATCA	1 cut(s)	1030
BcoDI	GTCTC	3 cut(s)	128, 196, 635
BfaI	CTAG	1 cut(s)	843
BisI	GCNGC	6 cut(s)	106, 161, 182, 185, 188, 906
BlsI	GCNGC	6 cut(s)	107, 162, 183, 186, 189, 907
Bme1390I	CCNGG	2 cut(s)	365, 554
BmiI	GGNNCC	2 cut(s)	551, 946
BmrFI	CCNGG	2 cut(s)	365, 554
BmsI	GCATC	3 cut(s)	742, 885, 1049
BpiI	GAAGAC	2 cut(s)	897, 1140
BplI	GAGNNNNNCTC	4 cut(s)	37, 69, 999, 1031
BpmI	CTGGAG	1 cut(s)	1054
BpuEI	CTTGAG	2 cut(s)	704, 1099
BsaBI	GATNNNNATC	1 cut(s)	244
BsaHI	GRCGYC	1 cut(s)	729
BsaXI	ACNNNNNCTCC	2 cut(s)	359, 389
Bsc4I	CCNNNNNNNGG	3 cut(s)	534, 721, 836
Bse8I	GATNNNNATC	1 cut(s)	244
BseBI	CCWGG	2 cut(s)	365, 554
BseGI	GGATG	1 cut(s)	67
BseJI	GATNNNNATC	1 cut(s)	244
BseLI	CCNNNNNNNGG	3 cut(s)	534, 721, 836
BseMII	CTCAG	1 cut(s)	597
BsePI	GCGCGC	1 cut(s)	337
BseXI	GCAGC	6 cut(s)	92, 172, 193, 196, 199, 917
Bsh1236I	CGCG	1 cut(s)	339
BshNI	GGYRCC	2 cut(s)	549, 944
BslI	CCNNNNNNNGG	3 cut(s)	534, 721, 836
BsmAI	GTCTC	3 cut(s)	128, 196, 635
BsmBI	CGTCTC	2 cut(s)	128, 196
BsmI	GAATGC	1 cut(s)	456
Bsp143I	GATC	6 cut(s)	151, 239, 678, 778, 925, 1030
BspACI	CCGC	1 cut(s)	351
BspCNI	CTCAG	1 cut(s)	596
BspFNI	CGCG	1 cut(s)	339
BspLI	GGNNCC	2 cut(s)	551, 946
BspPI	GGATC	1 cut(s)	673
BspT107I	GGYRCC	2 cut(s)	549, 944
BssHII	GCGCGC	1 cut(s)	337
BssMI	GATC	6 cut(s)	151, 239, 678, 778, 925, 1030
BssNAI	GTATAC	1 cut(s)	1147
BssNI	GRCGYC	1 cut(s)	729
Bst1107I	GTATAC	1 cut(s)	1147
Bst2UI	CCWGG	2 cut(s)	365, 554
Bst4CI	ACNGT	3 cut(s)	266, 282, 288
Bst6I	CTCTTC	1 cut(s)	663
BstACI	GRCGYC	1 cut(s)	729
BstC8I	GCNNGC	3 cut(s)	147, 339, 886
BstDEI	CTNAG	1 cut(s)	583
BstF5I	GGATG	1 cut(s)	67
BstFNI	CGCG	1 cut(s)	339
BstHHI	GCGC	4 cut(s)	160, 339, 341, 372
BstKTI	GATC	6 cut(s)	154, 242, 681, 781, 928, 1033
BstMAI	GTCTC	3 cut(s)	128, 196, 635
BstMBI	GATC	6 cut(s)	151, 239, 678, 778, 925, 1030
BstMWI	GCNNNNNNNGC	4 cut(s)	155, 187, 336, 601
BstNI	CCWGG	2 cut(s)	365, 554
BstNSI	RCATGY	1 cut(s)	743
BstSCI	CCNGG	2 cut(s)	363, 552
BstUI	CGCG	1 cut(s)	339
BstV1I	GCAGC	6 cut(s)	92, 172, 193, 196, 199, 917
BstV2I	GAAGAC	2 cut(s)	897, 1140
BstZ17I	GTATAC	1 cut(s)	1147
BtsCI	GGATG	1 cut(s)	67
BtsIMutI	CAGTG	1 cut(s)	886
Cac8I	GCNNGC	3 cut(s)	147, 339, 886
CaiI	CAGNNNCTG	1 cut(s)	885
CfoI	GCGC	4 cut(s)	160, 339, 341, 372
CseI	GACGC	1 cut(s)	718
Csp6I	GTAC	2 cut(s)	376, 852
CviAII	CATG	5 cut(s)	412, 664, 676, 740, 949
CviQI	GTAC	2 cut(s)	376, 852
DdeI	CTNAG	1 cut(s)	583
DpnI	GATC	6 cut(s)	153, 241, 680, 780, 927, 1032
DpnII	GATC	6 cut(s)	151, 239, 678, 778, 925, 1030
DraIII	CACNNNGTG	1 cut(s)	89
Eam1104I	CTCTTC	1 cut(s)	663
EarI	CTCTTC	1 cut(s)	663
Eco32I	GATATC	1 cut(s)	694
EcoRII	CCWGG	2 cut(s)	363, 552
EcoRV	GATATC	1 cut(s)	694
Esp3I	CGTCTC	2 cut(s)	128, 196
FaeI	CATG	5 cut(s)	415, 667, 679, 743, 952
FatI	CATG	5 cut(s)	411, 663, 675, 739, 948
FbaI	TGATCA	1 cut(s)	1030
FblI	GTMKAC	2 cut(s)	792, 1146
Fnu4HI	GCNGC	6 cut(s)	106, 161, 182, 185, 188, 906
FokI	GGATG	1 cut(s)	54
Fsp4HI	GCNGC	6 cut(s)	106, 161, 182, 185, 188, 906
FspBI	CTAG	1 cut(s)	843
FspI	TGCGCA	1 cut(s)	159
GlaI	GCGC	4 cut(s)	159, 338, 340, 371
GluI	GCNGC	6 cut(s)	106, 161, 182, 185, 188, 906
GsuI	CTGGAG	1 cut(s)	1054
HgaI	GACGC	1 cut(s)	718
HhaI	GCGC	4 cut(s)	160, 339, 341, 372
Hin1I	GRCGYC	1 cut(s)	729
Hin1II	CATG	5 cut(s)	415, 667, 679, 743, 952
Hin6I	GCGC	4 cut(s)	158, 337, 339, 370
HinP1I	GCGC	4 cut(s)	158, 337, 339, 370
HincII	GTYRAC	1 cut(s)	628
HindII	GTYRAC	1 cut(s)	628
HinfI	GANTC	3 cut(s)	499, 563, 1074
HphI	GGTGA	5 cut(s)	69, 234, 270, 276, 704
Hpy166II	GTNNAC	5 cut(s)	269, 628, 712, 793, 1147
Hpy188I	TCNGA	4 cut(s)	129, 201, 472, 1132
Hpy188III	TCNNGA	5 cut(s)	585, 656, 776, 1071, 1078
Hpy8I	GTNNAC	5 cut(s)	269, 628, 712, 793, 1147
Hpy99I	CGWCG	4 cut(s)	256, 623, 641, 1098
HpyAV	CCTTC	5 cut(s)	167, 473, 811, 843, 986
HpyCH4III	ACNGT	3 cut(s)	266, 282, 288
HpyCH4IV	ACGT	2 cut(s)	789, 1001
HpyCH4V	TGCA	3 cut(s)	39, 456, 876
HpyF10VI	GCNNNNNNNGC	4 cut(s)	155, 187, 336, 601
HpyF3I	CTNAG	1 cut(s)	583
HpySE526I	ACGT	2 cut(s)	789, 1001
Hsp92I	GRCGYC	1 cut(s)	729
Hsp92II	CATG	5 cut(s)	415, 667, 679, 743, 952
HspAI	GCGC	4 cut(s)	158, 337, 339, 370
Ksp22I	TGATCA	1 cut(s)	1030
Kzo9I	GATC	6 cut(s)	151, 239, 678, 778, 925, 1030
LmnI	GCTCC	1 cut(s)	367
Lsp1109I	GCAGC	6 cut(s)	92, 172, 193, 196, 199, 917
LweI	GCATC	3 cut(s)	742, 885, 1049
MaeI	CTAG	1 cut(s)	843
MaeII	ACGT	2 cut(s)	789, 1001
MaeIII	GTNAC	4 cut(s)	91, 282, 355, 730
MalI	GATC	6 cut(s)	153, 241, 680, 780, 927, 1032
MboI	GATC	6 cut(s)	151, 239, 678, 778, 925, 1030
MboII	GAAGA	7 cut(s)	485, 488, 523, 680, 902, 1145, 1165
MfeI	CAATTG	2 cut(s)	25, 34
MluCI	AATT	9 cut(s)	25, 34, 223, 697, 771, 870, 969, 1035, 1157
MlyI	GAGTC	1 cut(s)	493
MmeI	TCCRAC	1 cut(s)	95
MseI	TTAA	5 cut(s)	123, 222, 314, 975, 1047
MslI	CAYNNNNRTG	1 cut(s)	14
MspA1I	CMGCKG	2 cut(s)	149, 216
MspR9I	CCNGG	2 cut(s)	365, 554
MunI	CAATTG	2 cut(s)	25, 34
Mva1269I	GAATGC	1 cut(s)	456
MvaI	CCWGG	2 cut(s)	365, 554
MvnI	CGCG	1 cut(s)	339
MwoI	GCNNNNNNNGC	4 cut(s)	155, 187, 336, 601
NdeII	GATC	6 cut(s)	151, 239, 678, 778, 925, 1030
NlaIII	CATG	5 cut(s)	415, 667, 679, 743, 952
NlaIV	GGNNCC	2 cut(s)	551, 946
NmuCI	GTSAC	3 cut(s)	282, 355, 730
NsbI	TGCGCA	1 cut(s)	159
NspI	RCATGY	1 cut(s)	743
PauI	GCGCGC	1 cut(s)	337
PcsI	WCGNNNNNNNCGW	1 cut(s)	636
PctI	GAATGC	1 cut(s)	456
PfeI	GAWTC	2 cut(s)	563, 1074
PkrI	GCNGC	6 cut(s)	107, 162, 183, 186, 189, 907
PleI	GAGTC	1 cut(s)	493
PpsI	GAGTC	1 cut(s)	493
PshBI	ATTAAT	1 cut(s)	222
Psp6I	CCWGG	2 cut(s)	363, 552
PspGI	CCWGG	2 cut(s)	363, 552
PspN4I	GGNNCC	2 cut(s)	551, 946
PstNI	CAGNNNCTG	1 cut(s)	885
PteI	GCGCGC	1 cut(s)	337
PvuII	CAGCTG	2 cut(s)	149, 216
RsaI	GTAC	2 cut(s)	377, 853
RsaNI	GTAC	2 cut(s)	376, 852
RseI	CAYNNNNRTG	1 cut(s)	14
SaqAI	TTAA	5 cut(s)	123, 222, 314, 975, 1047
SatI	GCNGC	6 cut(s)	106, 161, 182, 185, 188, 906
Sau3AI	GATC	6 cut(s)	151, 239, 678, 778, 925, 1030
SchI	GAGTC	1 cut(s)	493
ScrFI	CCNGG	2 cut(s)	365, 554
SfaNI	GCATC	3 cut(s)	742, 885, 1049
SmiMI	CAYNNNNRTG	1 cut(s)	14
SmlI	CTYRAG	2 cut(s)	719, 1078
SmoI	CTYRAG	2 cut(s)	719, 1078
Sse9I	AATT	9 cut(s)	25, 34, 223, 697, 771, 870, 969, 1035, 1157
SsiI	CCGC	1 cut(s)	351
SspMI	CTAG	1 cut(s)	843
StyD4I	CCNGG	2 cut(s)	363, 552
TaaI	ACNGT	3 cut(s)	266, 282, 288
TaiI	ACGT	2 cut(s)	792, 1004
TaqI	TCGA	5 cut(s)	58, 636, 928, 1017, 1140
TasI	AATT	9 cut(s)	25, 34, 223, 697, 771, 870, 969, 1035, 1157
TatI	WGTACW	2 cut(s)	375, 851
TfiI	GAWTC	2 cut(s)	563, 1074
Tru1I	TTAA	5 cut(s)	123, 222, 314, 975, 1047
Tru9I	TTAA	5 cut(s)	123, 222, 314, 975, 1047
TscAI	CASTG	1 cut(s)	886
TseFI	GTSAC	3 cut(s)	282, 355, 730
TseI	GCWGC	6 cut(s)	105, 160, 181, 184, 187, 905
Tsp45I	GTSAC	3 cut(s)	282, 355, 730
TspDTI	ATGAA	3 cut(s)	428, 652, 953
TspRI	CASTG	1 cut(s)	886
VspI	ATTAAT	1 cut(s)	222
XapI	RAATTY	2 cut(s)	1035, 1157
XceI	RCATGY	1 cut(s)	743
XmiI	GTMKAC	2 cut(s)	792, 1146
XspI	CTAG	1 cut(s)	843

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.