Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0006934

Physical Location & Seq

Genomic Coordinates Reverse (-)

36495195 .. 36497518

Gene Structure 2324 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000013716

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1185 bp

ATGGGAAGCAAAACAACGACCAGTACTTGTAGTAATTGCAAGACGAGGCTTCCTCATCTAACCTCTCATCCAATCTCACCAACACCCCGTTTTACTCAATATCGCTGCTTCTGTGGTTATGTTAGTCTGATTGAGACGACCAAGCCAGCTCTTGCCCAGCACCACCACGAAGGTCAGCAGCAGCAGCAGCAGCACAGCCATCGGAGACGAGCTTCCAGCTTGATTTCGCATATAAAGGGATCATCACCATCATCGTCGTCCAAGAACTGTAAATCCCCATCACCGTCACCGTCATCGTCATCGTCATCGTCATCGTCATCAACCAGCTTAATAAAAAGCTGTGGCAGAAAGCGCGCACTTCTTTGCGGAGTGACATACCAGGCGCGCAAGTACAAACTCAAAGGCACTTACAATGATGTCAATAACATGAAACACTTGTTGACCAACACCTTTTGTTTTCCAGCCGACTGCATTCGCATACTATCAGAAGAAGAAGGGCAACCGAAAGAGCTGACTCCCACAAAGAAGAACATAGAGAAATCCCTGAAATGGCTTGTGGAGGGGTGCCAGGCAGGAGATTCGTTGGTGTTCTACTTCTCAGGACACGGGCTACGACAGCCCGATTTCAAAGACGACGAGGTTGATGGGTTCGACGAGACTATATGCCCTCTTGATTTCATGGAAGAGGGCATGATCCTTGACAATGATATCAATTCAACCATCGTTCACCCACTCAAGGAGGGCGTCACACTTCATGCTATTGTTGATGCTTGTCATAGTGGAACAATTCTTGATCTACTCTATGTCTACGACCATAAAGGGAACAAGTGGAAGGATAATTGTCCTCCTTCTGGTGCTAGGAAAAGTACAAGTGGAGGGTTGGCAATTTGCATCAGTGCCTGCGAAGACGATAAAATGGCAGCAGATACAACTGCTTTTGATCGAAATGTAATGAATGGTGCCATGACATACATTCTTATTGAAATTATTAAGAGCCACTCTGGTAAAGGCATAACGTATGGGGATCTGCTCGACTTCATGTTTGATCAAATTCAAAGGATTAATGGGGATAGATGCCTCAACTCCAGAATCTTGAGAAAAGTTTTTCGACACAAAATCATTCAGCAACCTTTATTGTCATCGTCCGAAGACTTCGATGTATACAAGAAGAAATTTCTCTTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004175 GO:0004197 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008234 GO:0010941 GO:0010942 GO:0016787 GO:0019538 GO:0043067 GO:0043068 GO:0043170 GO:0044238 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0065007 GO:0070011 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_C14

Protein Analysis

395

Amino Acids

43.89

Weight (kDa)

8.68

Isoelectric Point (pI)

51.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_C14	PF00656	116 - 352	2e-29	Caspase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006934)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g28030 FvH4_5g28030
malus_domestica	MD05G1043500.v1.1 MD05G1043900.v1.1 MD10G1050900.v1.1
prunus_persica	Prupe.8G062700_v2.0.a1 Prupe.8G062700_v2.0.a1 Prupe.8G062700_v2.0.a1 Prupe.8G062700_v2.0.a1 Prupe.8G062700_v2.0.a1
pyrus_communis	pycom05g03590 pycom05g03600 pycom10g03580
rosa_chinensis	RchiOBHm_Chr6g0271771 RchiOBHm_Chr6g0271791
rosa_laevigata	RLG00000013716 RLG00000013731
rosa_multiflora	Rmu_sc0002396.1_g000009
rosa_roxburghii	Rroxscaffold_7G00196660
rosa_rugosa	Rorug06G0062400
rosa_samantha	Rh6BG186100 Rh6CG180800 Rh6CG181700
rosa_wichuraiana	Rw0G011900 Rw6G015540 Rw6G015550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	564, 959
AccI	GTMKAC	2 cut(s)	807, 1161
AccII	CGCG	2 cut(s)	354, 385
AciI	CCGC	1 cut(s)	366
AclWI	GGATC	3 cut(s)	247, 688, 1032
AcsI	RAATTY	2 cut(s)	1050, 1172
AcyI	GRCGYC	1 cut(s)	744
AfaI	GTAC	3 cut(s)	25, 392, 868
AfiI	CCNNNNNNNGG	3 cut(s)	549, 736, 851
AgsI	TTSAA	4 cut(s)	628, 717, 983, 1055
AjnI	CCWGG	2 cut(s)	378, 567
AloI	GAACNNNNNNTCC	2 cut(s)	257, 289
AluBI	AGCT	6 cut(s)	149, 212, 219, 327, 339, 511
AluI	AGCT	6 cut(s)	149, 212, 219, 327, 339, 511
Alw26I	GTCTC	3 cut(s)	128, 199, 650
AlwI	GGATC	3 cut(s)	247, 688, 1032
AlwNI	CAGNNNCTG	1 cut(s)	900
ApeKI	GCWGC	7 cut(s)	105, 178, 181, 184, 187, 190, 920
ApoI	RAATTY	2 cut(s)	1050, 1172
ArsI	GACNNNNNNTTYG	2 cut(s)	1025, 1057
AseI	ATTAAT	1 cut(s)	1062
AspLEI	GCGC	4 cut(s)	354, 356, 385, 387
AsuHPI	GGTGA	5 cut(s)	69, 237, 273, 279, 719
BanI	GGYRCC	2 cut(s)	564, 959
BbsI	GAAGAC	2 cut(s)	912, 1155
BbvI	GCAGC	7 cut(s)	92, 190, 193, 196, 199, 202, 932
BccI	CCATC	5 cut(s)	207, 256, 286, 638, 728
BcgI	CGANNNNNNTGC	4 cut(s)	182, 216, 561, 595
BciT130I	CCWGG	2 cut(s)	380, 569
BclI	TGATCA	1 cut(s)	1045
BcoDI	GTCTC	3 cut(s)	128, 199, 650
BfaI	CTAG	1 cut(s)	858
BisI	GCNGC	7 cut(s)	106, 179, 182, 185, 188, 191, 921
BlsI	GCNGC	7 cut(s)	107, 180, 183, 186, 189, 192, 922
BmcAI	AGTACT	1 cut(s)	25
Bme1390I	CCNGG	2 cut(s)	380, 569
BmiI	GGNNCC	2 cut(s)	566, 961
BmrFI	CCNGG	2 cut(s)	380, 569
BmsI	GCATC	3 cut(s)	757, 900, 1064
BpiI	GAAGAC	2 cut(s)	912, 1155
BplI	GAGNNNNNCTC	2 cut(s)	37, 69
BpmI	CTGGAG	1 cut(s)	1069
BpuEI	CTTGAG	2 cut(s)	719, 1114
BsaHI	GRCGYC	1 cut(s)	744
Bsc4I	CCNNNNNNNGG	3 cut(s)	549, 736, 851
Bse1I	ACTGG	1 cut(s)	21
BseBI	CCWGG	2 cut(s)	380, 569
BseGI	GGATG	1 cut(s)	67
BseLI	CCNNNNNNNGG	3 cut(s)	549, 736, 851
BseMII	CTCAG	1 cut(s)	612
BseNI	ACTGG	1 cut(s)	21
BsePI	GCGCGC	2 cut(s)	352, 383
BseXI	GCAGC	7 cut(s)	92, 190, 193, 196, 199, 202, 932
BseYI	CCCAGC	1 cut(s)	156
Bsh1236I	CGCG	2 cut(s)	354, 385
BshNI	GGYRCC	2 cut(s)	564, 959
BslI	CCNNNNNNNGG	3 cut(s)	549, 736, 851
BsmAI	GTCTC	3 cut(s)	128, 199, 650
BsmBI	CGTCTC	2 cut(s)	128, 199
BsmI	GAATGC	1 cut(s)	471
Bsp143I	GATC	6 cut(s)	239, 693, 793, 940, 1024, 1045
BspACI	CCGC	1 cut(s)	366
BspCNI	CTCAG	1 cut(s)	611
BspFNI	CGCG	2 cut(s)	354, 385
BspLI	GGNNCC	2 cut(s)	566, 961
BspPI	GGATC	3 cut(s)	247, 688, 1032
BspT107I	GGYRCC	2 cut(s)	564, 959
BsrI	ACTGG	1 cut(s)	21
BssHII	GCGCGC	2 cut(s)	352, 383
BssMI	GATC	6 cut(s)	239, 693, 793, 940, 1024, 1045
BssNAI	GTATAC	1 cut(s)	1162
BssNI	GRCGYC	1 cut(s)	744
Bst1107I	GTATAC	1 cut(s)	1162
Bst2UI	CCWGG	2 cut(s)	380, 569
Bst4CI	ACNGT	3 cut(s)	269, 285, 291
Bst6I	CTCTTC	1 cut(s)	678
BstACI	GRCGYC	1 cut(s)	744
BstC8I	GCNNGC	4 cut(s)	147, 354, 385, 901
BstDEI	CTNAG	1 cut(s)	598
BstF5I	GGATG	1 cut(s)	67
BstFNI	CGCG	2 cut(s)	354, 385
BstHHI	GCGC	4 cut(s)	354, 356, 385, 387
BstKTI	GATC	6 cut(s)	242, 696, 796, 943, 1027, 1048
BstMAI	GTCTC	3 cut(s)	128, 199, 650
BstMBI	GATC	6 cut(s)	239, 693, 793, 940, 1024, 1045
BstMWI	GCNNNNNNNGC	5 cut(s)	184, 187, 190, 351, 616
BstNI	CCWGG	2 cut(s)	380, 569
BstSCI	CCNGG	2 cut(s)	378, 567
BstUI	CGCG	2 cut(s)	354, 385
BstV1I	GCAGC	7 cut(s)	92, 190, 193, 196, 199, 202, 932
BstV2I	GAAGAC	2 cut(s)	912, 1155
BstX2I	RGATCY	1 cut(s)	1024
BstYI	RGATCY	1 cut(s)	1024
BstZ17I	GTATAC	1 cut(s)	1162
BtsCI	GGATG	1 cut(s)	67
BtsIMutI	CAGTG	1 cut(s)	901
Cac8I	GCNNGC	4 cut(s)	147, 354, 385, 901
CaiI	CAGNNNCTG	1 cut(s)	900
CfoI	GCGC	4 cut(s)	354, 356, 385, 387
CseI	GACGC	1 cut(s)	733
Csp6I	GTAC	3 cut(s)	24, 391, 867
CviAII	CATG	6 cut(s)	427, 679, 691, 755, 964, 1039
CviQI	GTAC	3 cut(s)	24, 391, 867
DdeI	CTNAG	1 cut(s)	598
DpnI	GATC	6 cut(s)	241, 695, 795, 942, 1026, 1047
DpnII	GATC	6 cut(s)	239, 693, 793, 940, 1024, 1045
Eam1104I	CTCTTC	1 cut(s)	678
EarI	CTCTTC	1 cut(s)	678
Eco32I	GATATC	1 cut(s)	709
EcoRII	CCWGG	2 cut(s)	378, 567
EcoRV	GATATC	1 cut(s)	709
Esp3I	CGTCTC	2 cut(s)	128, 199
FaeI	CATG	6 cut(s)	430, 682, 694, 758, 967, 1042
FatI	CATG	6 cut(s)	426, 678, 690, 754, 963, 1038
FbaI	TGATCA	1 cut(s)	1045
FblI	GTMKAC	2 cut(s)	807, 1161
Fnu4HI	GCNGC	7 cut(s)	106, 179, 182, 185, 188, 191, 921
FokI	GGATG	1 cut(s)	54
Fsp4HI	GCNGC	7 cut(s)	106, 179, 182, 185, 188, 191, 921
FspBI	CTAG	1 cut(s)	858
GlaI	GCGC	4 cut(s)	353, 355, 384, 386
GluI	GCNGC	7 cut(s)	106, 179, 182, 185, 188, 191, 921
GsaI	CCCAGC	1 cut(s)	160
GsuI	CTGGAG	1 cut(s)	1069
HgaI	GACGC	1 cut(s)	733
HhaI	GCGC	4 cut(s)	354, 356, 385, 387
Hin1I	GRCGYC	1 cut(s)	744
Hin1II	CATG	6 cut(s)	430, 682, 694, 758, 967, 1042
Hin6I	GCGC	4 cut(s)	352, 354, 383, 385
HinP1I	GCGC	4 cut(s)	352, 354, 383, 385
HincII	GTYRAC	1 cut(s)	441
HindII	GTYRAC	1 cut(s)	441
HinfI	GANTC	3 cut(s)	514, 578, 1089
HphI	GGTGA	5 cut(s)	69, 237, 273, 279, 719
Hpy166II	GTNNAC	4 cut(s)	441, 727, 808, 1162
Hpy188I	TCNGA	4 cut(s)	129, 204, 487, 1147
Hpy188III	TCNNGA	5 cut(s)	600, 671, 791, 1086, 1093
Hpy8I	GTNNAC	4 cut(s)	441, 727, 808, 1162
Hpy99I	CGWCG	3 cut(s)	259, 638, 656
HpyAV	CCTTC	4 cut(s)	164, 488, 826, 858
HpyCH4III	ACNGT	3 cut(s)	269, 285, 291
HpyCH4IV	ACGT	1 cut(s)	1016
HpyCH4V	TGCA	3 cut(s)	39, 471, 891
HpyF10VI	GCNNNNNNNGC	5 cut(s)	184, 187, 190, 351, 616
HpyF3I	CTNAG	1 cut(s)	598
HpySE526I	ACGT	1 cut(s)	1016
Hsp92I	GRCGYC	1 cut(s)	744
Hsp92II	CATG	6 cut(s)	430, 682, 694, 758, 967, 1042
HspAI	GCGC	4 cut(s)	352, 354, 383, 385
Ksp22I	TGATCA	1 cut(s)	1045
Kzo9I	GATC	6 cut(s)	239, 693, 793, 940, 1024, 1045
Lsp1109I	GCAGC	7 cut(s)	92, 190, 193, 196, 199, 202, 932
LweI	GCATC	3 cut(s)	757, 900, 1064
MaeI	CTAG	1 cut(s)	858
MaeII	ACGT	1 cut(s)	1016
MaeIII	GTNAC	3 cut(s)	285, 370, 745
MalI	GATC	6 cut(s)	241, 695, 795, 942, 1026, 1047
MboI	GATC	6 cut(s)	239, 693, 793, 940, 1024, 1045
MboII	GAAGA	7 cut(s)	500, 503, 538, 695, 917, 1160, 1180
MflI	RGATCY	1 cut(s)	1024
MluCI	AATT	8 cut(s)	34, 712, 786, 838, 885, 984, 1050, 1172
MlyI	GAGTC	1 cut(s)	508
MseI	TTAA	3 cut(s)	329, 990, 1062
MspR9I	CCNGG	2 cut(s)	380, 569
Mva1269I	GAATGC	1 cut(s)	471
MvaI	CCWGG	2 cut(s)	380, 569
MvnI	CGCG	2 cut(s)	354, 385
MwoI	GCNNNNNNNGC	5 cut(s)	184, 187, 190, 351, 616
NdeII	GATC	6 cut(s)	239, 693, 793, 940, 1024, 1045
NlaIII	CATG	6 cut(s)	430, 682, 694, 758, 967, 1042
NlaIV	GGNNCC	2 cut(s)	566, 961
NmuCI	GTSAC	3 cut(s)	285, 370, 745
PauI	GCGCGC	2 cut(s)	352, 383
PctI	GAATGC	1 cut(s)	471
PfeI	GAWTC	2 cut(s)	578, 1089
PkrI	GCNGC	7 cut(s)	107, 180, 183, 186, 189, 192, 922
PleI	GAGTC	1 cut(s)	508
PpsI	GAGTC	1 cut(s)	508
PshBI	ATTAAT	1 cut(s)	1062
Psp6I	CCWGG	2 cut(s)	378, 567
PspFI	CCCAGC	1 cut(s)	156
PspGI	CCWGG	2 cut(s)	378, 567
PspN4I	GGNNCC	2 cut(s)	566, 961
PstNI	CAGNNNCTG	1 cut(s)	900
PsuI	RGATCY	1 cut(s)	1024
PteI	GCGCGC	2 cut(s)	352, 383
RsaI	GTAC	3 cut(s)	25, 392, 868
RsaNI	GTAC	3 cut(s)	24, 391, 867
SaqAI	TTAA	3 cut(s)	329, 990, 1062
SatI	GCNGC	7 cut(s)	106, 179, 182, 185, 188, 191, 921
Sau3AI	GATC	6 cut(s)	239, 693, 793, 940, 1024, 1045
ScaI	AGTACT	1 cut(s)	25
SchI	GAGTC	1 cut(s)	508
ScrFI	CCNGG	2 cut(s)	380, 569
SfaNI	GCATC	3 cut(s)	757, 900, 1064
SmlI	CTYRAG	2 cut(s)	734, 1093
SmoI	CTYRAG	2 cut(s)	734, 1093
Sse9I	AATT	8 cut(s)	34, 712, 786, 838, 885, 984, 1050, 1172
SsiI	CCGC	1 cut(s)	366
SspMI	CTAG	1 cut(s)	858
StyD4I	CCNGG	2 cut(s)	378, 567
TaaI	ACNGT	3 cut(s)	269, 285, 291
TaiI	ACGT	1 cut(s)	1019
TaqI	TCGA	5 cut(s)	651, 943, 1032, 1108, 1155
TasI	AATT	8 cut(s)	34, 712, 786, 838, 885, 984, 1050, 1172
TatI	WGTACW	3 cut(s)	23, 390, 866
TfiI	GAWTC	2 cut(s)	578, 1089
Tru1I	TTAA	3 cut(s)	329, 990, 1062
Tru9I	TTAA	3 cut(s)	329, 990, 1062
TscAI	CASTG	1 cut(s)	901
TseFI	GTSAC	3 cut(s)	285, 370, 745
TseI	GCWGC	7 cut(s)	105, 178, 181, 184, 187, 190, 920
Tsp45I	GTSAC	3 cut(s)	285, 370, 745
TspDTI	ATGAA	5 cut(s)	443, 667, 743, 968, 1027
TspRI	CASTG	1 cut(s)	901
VspI	ATTAAT	1 cut(s)	1062
XapI	RAATTY	2 cut(s)	1050, 1172
XmiI	GTMKAC	2 cut(s)	807, 1161
XspI	CTAG	1 cut(s)	858
ZrmI	AGTACT	1 cut(s)	25

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.