Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0006934

Physical Location & Seq

Genomic Coordinates Forward (+)

4156516 .. 4158868

Gene Structure 2353 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g03600.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 702 bp

ATGTCGTTGCCCTCCTCCTGCTCGGACAAGCCAGTATGCAGTGGATCACGACCAAACAAGCGTGCACTTCTTTGCGGGGTGACATACAAGCAACATAAATACAAGCTCAAAGGCATTTATAATGATGTGAAAAACATGGAAAACTTGCTGACTAAAACCTTCGGTTTTCCTGCCAACTGCATACGCATACTTTCAGCAAGATCGAACCCGCGTGACCTAGAGCGGATTCCTACAAAGAAAAATATAGAAAATTCCTTGAAATGGCTTGTGGAGGGATGCCAGCGGGGAGACTCGTTGGTGTTTTACTTCTCGGGGCATGGCTTACGACAGCCTGATTTCAAAGATGATGAGCTTGATGGGTTCGACGAGACCATTTGCCCTGTTGATTTTATGGAAGAGGGAATGATCCTTGACAATGATATTAATGAAACCATTGTTTGGCCACTCGAGGAGGGTGTCACACTTCACGCTATCGTTGATGCTTGTCACAGTGGAACGAATGTTGATCTGGAGCACGTGTATGACCGTAAACTGAATACTTGGAAGGATAATATTCCTCTATCTCGTGCTAGAAAAAGTACAAGGGGTGGGTTAGCGATTTCTCTTAGTGCTTGCGAAGATGATAAAATGGCAATTGATACTACTGAACAAGACCGACATAACATATGGAGTTTTGCTCGACGAGATGGTAAATTACATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004175 GO:0004197 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008234 GO:0010941 GO:0010942 GO:0016787 GO:0019538 GO:0043067 GO:0043068 GO:0043170 GO:0044238 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0065007 GO:0070011 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_C14

Protein Analysis

234

Amino Acids

26.45

Weight (kDa)

6.17

Isoelectric Point (pI)

47.84

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006934)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g28030 FvH4_5g28030
malus_domestica	MD05G1043500.v1.1 MD05G1043900.v1.1 MD10G1050900.v1.1
prunus_persica	Prupe.8G062700_v2.0.a1 Prupe.8G062700_v2.0.a1 Prupe.8G062700_v2.0.a1 Prupe.8G062700_v2.0.a1 Prupe.8G062700_v2.0.a1
pyrus_communis	pycom05g03590 pycom05g03600 pycom10g03580
rosa_chinensis	RchiOBHm_Chr6g0271771 RchiOBHm_Chr6g0271791
rosa_laevigata	RLG00000013716 RLG00000013731
rosa_multiflora	Rmu_sc0002396.1_g000009
rosa_roxburghii	Rroxscaffold_7G00196660
rosa_rugosa	Rorug06G0062400
rosa_samantha	Rh6BG186100 Rh6CG180800 Rh6CG181700
rosa_wichuraiana	Rw0G011900 Rw6G015540 Rw6G015550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	120
AccB7I	CCANNNNNTGG	1 cut(s)	438
AccBSI	CCGCTC	1 cut(s)	223
AccII	CGCG	1 cut(s)	211
AciI	CCGC	4 cut(s)	75, 209, 223, 283
AclWI	GGATC	2 cut(s)	52, 400
AcoI	YGGCCR	1 cut(s)	440
AcsI	RAATTY	1 cut(s)	250
AcvI	CACGTG	1 cut(s)	517
AfaI	GTAC	1 cut(s)	580
AfiI	CCNNNNNNNGG	2 cut(s)	261, 438
AflIII	ACRYGT	1 cut(s)	516
AgsI	TTSAA	2 cut(s)	259, 340
AluBI	AGCT	2 cut(s)	106, 352
AluI	AGCT	2 cut(s)	106, 352
Alw21I	GWGCWC	2 cut(s)	67, 516
Alw26I	GTCTC	2 cut(s)	282, 362
Alw44I	GTGCAC	1 cut(s)	63
AlwI	GGATC	2 cut(s)	52, 400
Ama87I	CYCGRG	2 cut(s)	310, 446
AoxI	GGCC	1 cut(s)	440
ApaLI	GTGCAC	1 cut(s)	63
ApoI	RAATTY	1 cut(s)	250
AseI	ATTAAT	1 cut(s)	423
AsuHPI	GGTGA	1 cut(s)	91
AvaI	CYCGRG	2 cut(s)	310, 446
BaeGI	GKGCMC	1 cut(s)	67
BalI	TGGCCA	1 cut(s)	442
BauI	CACGAG	1 cut(s)	564
BbrPI	CACGTG	1 cut(s)	517
Bbv12I	GWGCWC	2 cut(s)	67, 516
BccI	CCATC	2 cut(s)	350, 680
BcoDI	GTCTC	2 cut(s)	282, 362
BfaI	CTAG	2 cut(s)	218, 570
BmeT110I	CYCGRG	2 cut(s)	310, 446
BmsI	GCATC	2 cut(s)	266, 469
BplI	GAGNNNNNCTC	2 cut(s)	661, 693
BpmI	CTGGAG	1 cut(s)	530
BsaAI	YACGTR	1 cut(s)	517
BsaI	GGTCTC	1 cut(s)	362
BsaXI	ACNNNNNCTCC	2 cut(s)	503, 533
Bsc4I	CCNNNNNNNGG	2 cut(s)	261, 438
Bse1I	ACTGG	1 cut(s)	32
BseGI	GGATG	1 cut(s)	281
BseLI	CCNNNNNNNGG	2 cut(s)	261, 438
BseNI	ACTGG	1 cut(s)	32
BseRI	GAGGAG	2 cut(s)	4, 464
BseSI	GKGCMC	1 cut(s)	67
Bsh1236I	CGCG	1 cut(s)	211
BshFI	GGCC	1 cut(s)	442
BsiHKAI	GWGCWC	2 cut(s)	67, 516
BsiHKCI	CYCGRG	2 cut(s)	310, 446
BslI	CCNNNNNNNGG	2 cut(s)	261, 438
BsmAI	GTCTC	2 cut(s)	282, 362
BsnI	GGCC	1 cut(s)	442
Bso31I	GGTCTC	1 cut(s)	362
BsoBI	CYCGRG	2 cut(s)	310, 446
Bsp1286I	GDGCHC	2 cut(s)	67, 516
Bsp143I	GATC	4 cut(s)	44, 200, 405, 505
BspACI	CCGC	4 cut(s)	75, 209, 223, 283
BspANI	GGCC	1 cut(s)	442
BspFNI	CGCG	1 cut(s)	211
BspPI	GGATC	2 cut(s)	52, 400
BspTNI	GGTCTC	1 cut(s)	362
BsrBI	CCGCTC	1 cut(s)	223
BsrI	ACTGG	1 cut(s)	32
BssMI	GATC	4 cut(s)	44, 200, 405, 505
BssSI	CACGAG	1 cut(s)	564
Bst2BI	CACGAG	1 cut(s)	564
Bst4CI	ACNGT	2 cut(s)	491, 527
Bst6I	CTCTTC	1 cut(s)	390
BstBAI	YACGTR	1 cut(s)	517
BstC8I	GCNNGC	3 cut(s)	63, 281, 613
BstDEI	CTNAG	1 cut(s)	605
BstF5I	GGATG	1 cut(s)	281
BstFNI	CGCG	1 cut(s)	211
BstKTI	GATC	4 cut(s)	47, 203, 408, 508
BstMAI	GTCTC	2 cut(s)	282, 362
BstMBI	GATC	4 cut(s)	44, 200, 405, 505
BstSLI	GKGCMC	1 cut(s)	67
BstUI	CGCG	1 cut(s)	211
BsuRI	GGCC	1 cut(s)	442
BtsCI	GGATG	1 cut(s)	281
BtsI	GCAGTG	1 cut(s)	46
BtsIMutI	CAGTG	2 cut(s)	46, 496
Cac8I	GCNNGC	3 cut(s)	63, 281, 613
Csp6I	GTAC	1 cut(s)	579
CviAII	CATG	2 cut(s)	136, 317
CviJI	RGCY	7 cut(s)	31, 106, 265, 321, 331, 352, 442
CviKI_1	RGCY	7 cut(s)	31, 106, 265, 321, 331, 352, 442
CviQI	GTAC	1 cut(s)	579
DdeI	CTNAG	1 cut(s)	605
DpnI	GATC	4 cut(s)	46, 202, 407, 507
DpnII	GATC	4 cut(s)	44, 200, 405, 505
EaeI	YGGCCR	1 cut(s)	440
Eam1104I	CTCTTC	1 cut(s)	390
EarI	CTCTTC	1 cut(s)	390
Eco31I	GGTCTC	1 cut(s)	362
Eco72I	CACGTG	1 cut(s)	517
Eco88I	CYCGRG	2 cut(s)	310, 446
FaeI	CATG	2 cut(s)	139, 320
FatI	CATG	2 cut(s)	135, 316
FauI	CCCGC	3 cut(s)	68, 216, 276
FauNDI	CATATG	1 cut(s)	665
FokI	GGATG	1 cut(s)	288
FspBI	CTAG	2 cut(s)	218, 570
GsuI	CTGGAG	1 cut(s)	530
HaeIII	GGCC	1 cut(s)	442
Hin1II	CATG	2 cut(s)	139, 320
HinfI	GANTC	2 cut(s)	226, 290
HphI	GGTGA	1 cut(s)	91
Hpy166II	GTNNAC	2 cut(s)	65, 530
Hpy188I	TCNGA	1 cut(s)	25
Hpy188III	TCNNGA	2 cut(s)	48, 509
Hpy8I	GTNNAC	2 cut(s)	65, 530
Hpy99I	CGWCG	2 cut(s)	368, 684
HpyAV	CCTTC	2 cut(s)	169, 538
HpyCH4III	ACNGT	2 cut(s)	491, 527
HpyCH4IV	ACGT	1 cut(s)	516
HpyCH4V	TGCA	3 cut(s)	39, 65, 180
HpyF3I	CTNAG	1 cut(s)	605
HpySE526I	ACGT	1 cut(s)	516
Hsp92II	CATG	2 cut(s)	139, 320
Kzo9I	GATC	4 cut(s)	44, 200, 405, 505
LmnI	GCTCC	1 cut(s)	511
LpnPI	CCDG	7 cut(s)	31, 45, 183, 293, 345, 393, 494
LweI	GCATC	2 cut(s)	266, 469
MaeI	CTAG	2 cut(s)	218, 570
MaeII	ACGT	1 cut(s)	516
MaeIII	GTNAC	4 cut(s)	79, 212, 457, 485
MalI	GATC	4 cut(s)	46, 202, 407, 507
MbiI	CCGCTC	1 cut(s)	223
MboI	GATC	4 cut(s)	44, 200, 405, 505
MboII	GAAGA	2 cut(s)	407, 629
MfeI	CAATTG	1 cut(s)	633
MhlI	GDGCHC	2 cut(s)	67, 516
MlsI	TGGCCA	1 cut(s)	442
MluCI	AATT	3 cut(s)	250, 633, 692
MluNI	TGGCCA	1 cut(s)	442
MlyI	GAGTC	1 cut(s)	284
MnlI	CCTC	7 cut(s)	22, 25, 265, 391, 442, 445, 567
Mox20I	TGGCCA	1 cut(s)	442
MscI	TGGCCA	1 cut(s)	442
MseI	TTAA	2 cut(s)	423, 700
MslI	CAYNNNNRTG	1 cut(s)	519
Msp20I	TGGCCA	1 cut(s)	442
MspA1I	CMGCKG	1 cut(s)	283
MunI	CAATTG	1 cut(s)	633
MvnI	CGCG	1 cut(s)	211
NdeI	CATATG	1 cut(s)	665
NdeII	GATC	4 cut(s)	44, 200, 405, 505
NlaIII	CATG	2 cut(s)	139, 320
NmuCI	GTSAC	4 cut(s)	79, 212, 457, 485
PaeR7I	CTCGAG	1 cut(s)	446
PfeI	GAWTC	1 cut(s)	226
PflMI	CCANNNNNTGG	1 cut(s)	438
PleI	GAGTC	1 cut(s)	284
PmaCI	CACGTG	1 cut(s)	517
PmlI	CACGTG	1 cut(s)	517
PpsI	GAGTC	1 cut(s)	284
Ppu21I	YACGTR	1 cut(s)	517
PshBI	ATTAAT	1 cut(s)	423
PsiI	TTATAA	1 cut(s)	120
PspCI	CACGTG	1 cut(s)	517
PspXI	VCTCGAGB	1 cut(s)	446
RsaI	GTAC	1 cut(s)	580
RsaNI	GTAC	1 cut(s)	579
RseI	CAYNNNNRTG	1 cut(s)	519
SaqAI	TTAA	2 cut(s)	423, 700
Sau3AI	GATC	4 cut(s)	44, 200, 405, 505
SchI	GAGTC	1 cut(s)	284
SduI	GDGCHC	2 cut(s)	67, 516
SetI	ASST	5 cut(s)	108, 161, 219, 354, 519
SfaNI	GCATC	2 cut(s)	266, 469
Sfr274I	CTCGAG	1 cut(s)	446
SlaI	CTCGAG	1 cut(s)	446
SmiMI	CAYNNNNRTG	1 cut(s)	519
SmlI	CTYRAG	1 cut(s)	446
SmoI	CTYRAG	1 cut(s)	446
Sse9I	AATT	3 cut(s)	250, 633, 692
SsiI	CCGC	4 cut(s)	75, 209, 223, 283
SspI	AATATT	1 cut(s)	553
SspMI	CTAG	2 cut(s)	218, 570
TaaI	ACNGT	2 cut(s)	491, 527
TaiI	ACGT	1 cut(s)	519
TaqI	TCGA	4 cut(s)	203, 363, 447, 679
TaqII	GACCGA	1 cut(s)	669
TasI	AATT	3 cut(s)	250, 633, 692
TatI	WGTACW	1 cut(s)	578
TfiI	GAWTC	1 cut(s)	226
Tru1I	TTAA	2 cut(s)	423, 700
Tru9I	TTAA	2 cut(s)	423, 700
TscAI	CASTG	2 cut(s)	46, 496
TseFI	GTSAC	4 cut(s)	79, 212, 457, 485
Tsp45I	GTSAC	4 cut(s)	79, 212, 457, 485
TspDTI	ATGAA	1 cut(s)	441
TspRI	CASTG	2 cut(s)	46, 496
Van91I	CCANNNNNTGG	1 cut(s)	438
VneI	GTGCAC	1 cut(s)	63
VspI	ATTAAT	1 cut(s)	423
XapI	RAATTY	1 cut(s)	250
XhoI	CTCGAG	1 cut(s)	446
XspI	CTAG	2 cut(s)	218, 570

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.