Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0006934

Physical Location & Seq

Genomic Coordinates Forward (+)

3895920 .. 3896475

Gene Structure 556 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom10g03580.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 501 bp

ATGCTTTGCCCTAACTGTGCGGAACTGACGCTGGTTGGCACACAGCACCAATGCGTCCGCAGTGATGTAATCACTTACAGTGCTGCTCCAGAAACTCAAGGAGAAACTAGTAGTCGTGTTCGCGGAGATCACAAAGGTGAGCATCATAGCCTGGAGAGAGGGCTTAGCAGGCGTTACCAAACCAAGGAATCACCATCAAGTAATTCTTCTAGTACTGGATATTGCCTTAAGTGCAAGCAACAGTTTCAAGTGACGACCTTGTGTGGCACACGGCACCGATGCCTCTTCGGTTATGTAATCCCTTACGGTGCTGCTGCAGAAACACAAGGAGAAACTAGTAATCGTCTTCGTCGAGATCACAAAGATGAGCATCATAGCCTCCAAACCAAGGAATCATCATCAAACAATTCTTCTAGTACTAGTAGTTCAAGTCGTAATAGTTTCAAGCAATCTTATACAGGTACAGGGAGAGGGACGCCGATGTTGTTTGTTGGAAGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004175 GO:0004197 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008234 GO:0010941 GO:0010942 GO:0016787 GO:0019538 GO:0043067 GO:0043068 GO:0043170 GO:0044238 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0065007 GO:0070011 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_C14

Protein Analysis

167

Amino Acids

18.26

Weight (kDa)

9.05

Isoelectric Point (pI)

44.24

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006934)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g28030 FvH4_5g28030
malus_domestica	MD05G1043500.v1.1 MD05G1043900.v1.1 MD10G1050900.v1.1
prunus_persica	Prupe.8G062700_v2.0.a1 Prupe.8G062700_v2.0.a1 Prupe.8G062700_v2.0.a1 Prupe.8G062700_v2.0.a1 Prupe.8G062700_v2.0.a1
pyrus_communis	pycom05g03590 pycom05g03600 pycom10g03580
rosa_chinensis	RchiOBHm_Chr6g0271771 RchiOBHm_Chr6g0271791
rosa_laevigata	RLG00000013716 RLG00000013731
rosa_multiflora	Rmu_sc0002396.1_g000009
rosa_roxburghii	Rroxscaffold_7G00196660
rosa_rugosa	Rorug06G0062400
rosa_samantha	Rh6BG186100 Rh6CG180800 Rh6CG181700
rosa_wichuraiana	Rw0G011900 Rw6G015540 Rw6G015550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	273
AccII	CGCG	1 cut(s)	123
AciI	CCGC	3 cut(s)	20, 58, 123
AcyI	GRCGYC	1 cut(s)	476
AfaI	GTAC	3 cut(s)	214, 418, 463
AfiI	CCNNNNNNNGG	2 cut(s)	184, 388
AflII	CTTAAG	1 cut(s)	227
AgsI	TTSAA	3 cut(s)	248, 429, 445
AhlI	ACTAGT	3 cut(s)	107, 335, 419
AjnI	CCWGG	1 cut(s)	150
AleI	CACNNNNGTG	1 cut(s)	135
AluBI	AGCT	1 cut(s)	498
AluI	AGCT	1 cut(s)	498
ApeKI	GCWGC	3 cut(s)	83, 311, 314
AsuHPI	GGTGA	2 cut(s)	149, 183
BanI	GGYRCC	1 cut(s)	273
BbsI	GAAGAC	1 cut(s)	338
BbvI	GCAGC	3 cut(s)	70, 298, 301
BccI	CCATC	1 cut(s)	202
BceAI	ACGGC	1 cut(s)	287
BciT130I	CCWGG	1 cut(s)	152
BcuI	ACTAGT	3 cut(s)	107, 335, 419
BfaI	CTAG	5 cut(s)	108, 210, 336, 414, 420
BfmI	CTRYAG	1 cut(s)	315
BfrI	CTTAAG	1 cut(s)	227
BisI	GCNGC	3 cut(s)	84, 312, 315
BlpI	GCTNAGC	1 cut(s)	164
BlsI	GCNGC	3 cut(s)	85, 313, 316
BmcAI	AGTACT	2 cut(s)	214, 418
Bme1390I	CCNGG	1 cut(s)	152
BmiI	GGNNCC	1 cut(s)	275
BmrFI	CCNGG	1 cut(s)	152
BmsI	GCATC	3 cut(s)	151, 269, 379
BpiI	GAAGAC	1 cut(s)	338
BpmI	CTGGAG	2 cut(s)	72, 173
Bpu1102I	GCTNAGC	1 cut(s)	164
BpuEI	CTTGAG	1 cut(s)	81
BsaBI	GATNNNNATC	1 cut(s)	369
BsaHI	GRCGYC	1 cut(s)	476
BsaJI	CCNNGG	2 cut(s)	183, 387
Bsc4I	CCNNNNNNNGG	2 cut(s)	184, 388
Bse1I	ACTGG	1 cut(s)	220
Bse8I	GATNNNNATC	1 cut(s)	369
BseBI	CCWGG	1 cut(s)	152
BseDI	CCNNGG	2 cut(s)	183, 387
BseJI	GATNNNNATC	1 cut(s)	369
BseLI	CCNNNNNNNGG	2 cut(s)	184, 388
BseNI	ACTGG	1 cut(s)	220
BseXI	GCAGC	3 cut(s)	70, 298, 301
Bsh1236I	CGCG	1 cut(s)	123
BshNI	GGYRCC	1 cut(s)	273
BslFI	GGGAC	1 cut(s)	487
BslI	CCNNNNNNNGG	2 cut(s)	184, 388
BsmFI	GGGAC	1 cut(s)	487
Bsp143I	GATC	2 cut(s)	127, 355
Bsp1720I	GCTNAGC	1 cut(s)	164
BspACI	CCGC	3 cut(s)	20, 58, 123
BspFNI	CGCG	1 cut(s)	123
BspLI	GGNNCC	1 cut(s)	275
BspMAI	CTGCAG	1 cut(s)	319
BspT107I	GGYRCC	1 cut(s)	273
BspTI	CTTAAG	1 cut(s)	227
BsrI	ACTGG	1 cut(s)	220
BssECI	CCNNGG	2 cut(s)	183, 387
BssMI	GATC	2 cut(s)	127, 355
BssNI	GRCGYC	1 cut(s)	476
BssT1I	CCWWGG	2 cut(s)	183, 387
Bst2UI	CCWGG	1 cut(s)	152
Bst4CI	ACNGT	4 cut(s)	17, 80, 243, 308
Bst6I	CTCTTC	1 cut(s)	290
BstACI	GRCGYC	1 cut(s)	476
BstAFI	CTTAAG	1 cut(s)	227
BstC8I	GCNNGC	2 cut(s)	170, 236
BstDEI	CTNAG	1 cut(s)	164
BstFNI	CGCG	1 cut(s)	123
BstKTI	GATC	2 cut(s)	130, 358
BstMBI	GATC	2 cut(s)	127, 355
BstMWI	GCNNNNNNNGC	2 cut(s)	169, 231
BstNI	CCWGG	1 cut(s)	152
BstSCI	CCNGG	1 cut(s)	150
BstSFI	CTRYAG	1 cut(s)	315
BstUI	CGCG	1 cut(s)	123
BstV1I	GCAGC	3 cut(s)	70, 298, 301
BstV2I	GAAGAC	1 cut(s)	338
BtsI	GCAGTG	1 cut(s)	67
BtsIMutI	CAGTG	2 cut(s)	67, 85
Cac8I	GCNNGC	2 cut(s)	170, 236
CseI	GACGC	3 cut(s)	37, 43, 484
Csp6I	GTAC	3 cut(s)	213, 417, 462
CviJI	RGCY	4 cut(s)	150, 163, 378, 498
CviKI_1	RGCY	4 cut(s)	150, 163, 378, 498
CviQI	GTAC	3 cut(s)	213, 417, 462
DdeI	CTNAG	1 cut(s)	164
DpnI	GATC	2 cut(s)	129, 357
DpnII	GATC	2 cut(s)	127, 355
Eam1104I	CTCTTC	1 cut(s)	290
EarI	CTCTTC	1 cut(s)	290
Eco130I	CCWWGG	2 cut(s)	183, 387
EcoRII	CCWGG	1 cut(s)	150
EcoT14I	CCWWGG	2 cut(s)	183, 387
ErhI	CCWWGG	2 cut(s)	183, 387
FaiI	YATR	4 cut(s)	147, 294, 375, 456
FalI	AAGNNNNNCTT	2 cut(s)	190, 222
FaqI	GGGAC	1 cut(s)	487
Fnu4HI	GCNGC	3 cut(s)	84, 312, 315
Fsp4HI	GCNGC	3 cut(s)	84, 312, 315
FspBI	CTAG	5 cut(s)	108, 210, 336, 414, 420
GluI	GCNGC	3 cut(s)	84, 312, 315
GsuI	CTGGAG	2 cut(s)	72, 173
HgaI	GACGC	3 cut(s)	37, 43, 484
Hin1I	GRCGYC	1 cut(s)	476
HinfI	GANTC	2 cut(s)	188, 392
HphI	GGTGA	2 cut(s)	149, 183
Hpy188III	TCNNGA	2 cut(s)	89, 353
Hpy99I	CGWCG	1 cut(s)	354
HpyCH4III	ACNGT	4 cut(s)	17, 80, 243, 308
HpyCH4V	TGCA	2 cut(s)	234, 317
HpyF10VI	GCNNNNNNNGC	2 cut(s)	169, 231
HpyF3I	CTNAG	1 cut(s)	164
Hsp92I	GRCGYC	1 cut(s)	476
Kzo9I	GATC	2 cut(s)	127, 355
LmnI	GCTCC	1 cut(s)	91
LpnPI	CCDG	8 cut(s)	17, 102, 137, 154, 164, 201, 444, 450
Lsp1109I	GCAGC	3 cut(s)	70, 298, 301
LweI	GCATC	3 cut(s)	151, 269, 379
MaeI	CTAG	5 cut(s)	108, 210, 336, 414, 420
MaeIII	GTNAC	2 cut(s)	173, 250
MalI	GATC	2 cut(s)	129, 357
MboI	GATC	2 cut(s)	127, 355
MboII	GAAGA	4 cut(s)	198, 277, 338, 402
MluCI	AATT	2 cut(s)	202, 406
MmeI	TCCRAC	1 cut(s)	472
MnlI	CCTC	4 cut(s)	152, 293, 389, 464
MseI	TTAA	1 cut(s)	228
MslI	CAYNNNNRTG	2 cut(s)	135, 363
MspCI	CTTAAG	1 cut(s)	227
MspR9I	CCNGG	1 cut(s)	152
MvaI	CCWGG	1 cut(s)	152
MvnI	CGCG	1 cut(s)	123
MwoI	GCNNNNNNNGC	2 cut(s)	169, 231
NdeII	GATC	2 cut(s)	127, 355
NlaIV	GGNNCC	1 cut(s)	275
NmuCI	GTSAC	1 cut(s)	250
OliI	CACNNNNGTG	1 cut(s)	135
PcsI	WCGNNNNNNNCGW	1 cut(s)	349
PfeI	GAWTC	2 cut(s)	188, 392
PkrI	GCNGC	3 cut(s)	85, 313, 316
Psp6I	CCWGG	1 cut(s)	150
PspGI	CCWGG	1 cut(s)	150
PspN4I	GGNNCC	1 cut(s)	275
PsrI	GAACNNNNNNTAC	2 cut(s)	409, 441
PstI	CTGCAG	1 cut(s)	319
RsaI	GTAC	3 cut(s)	214, 418, 463
RsaNI	GTAC	3 cut(s)	213, 417, 462
RseI	CAYNNNNRTG	2 cut(s)	135, 363
SaqAI	TTAA	1 cut(s)	228
SatI	GCNGC	3 cut(s)	84, 312, 315
Sau3AI	GATC	2 cut(s)	127, 355
ScaI	AGTACT	2 cut(s)	214, 418
ScrFI	CCNGG	1 cut(s)	152
SetI	ASST	4 cut(s)	139, 260, 463, 500
SfaNI	GCATC	3 cut(s)	151, 269, 379
SfcI	CTRYAG	1 cut(s)	315
SmiMI	CAYNNNNRTG	2 cut(s)	135, 363
SmlI	CTYRAG	2 cut(s)	96, 227
SmoI	CTYRAG	2 cut(s)	96, 227
SpeI	ACTAGT	3 cut(s)	107, 335, 419
Sse9I	AATT	2 cut(s)	202, 406
SsiI	CCGC	3 cut(s)	20, 58, 123
SspMI	CTAG	5 cut(s)	108, 210, 336, 414, 420
StyD4I	CCNGG	1 cut(s)	150
StyI	CCWWGG	2 cut(s)	183, 387
TaaI	ACNGT	4 cut(s)	17, 80, 243, 308
TaqI	TCGA	1 cut(s)	352
TasI	AATT	2 cut(s)	202, 406
TatI	WGTACW	2 cut(s)	212, 416
TfiI	GAWTC	2 cut(s)	188, 392
Tru1I	TTAA	1 cut(s)	228
Tru9I	TTAA	1 cut(s)	228
TscAI	CASTG	2 cut(s)	67, 85
TseFI	GTSAC	1 cut(s)	250
TseI	GCWGC	3 cut(s)	83, 311, 314
Tsp45I	GTSAC	1 cut(s)	250
TspRI	CASTG	2 cut(s)	67, 85
Vha464I	CTTAAG	1 cut(s)	227
XspI	CTAG	5 cut(s)	108, 210, 336, 414, 420
ZrmI	AGTACT	2 cut(s)	214, 418

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.