Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0006934

Physical Location & Seq

Genomic Coordinates Reverse (-)

34252516 .. 34263034

Gene Structure 10519 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG186100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1392 bp

ATGAGAAGCACAACAATGACCACCAATTGTAGCAGTTGCAAGACGAGGCTTCCTCATCTAACCTCTCATCCAACCTCACCAATACCCCGTGTTACTCAATATCGCTGCTTCTGTGGTTATGTTAATCTGATTGAGACGACCAAGCCAGCTGATCTTGCCCAGCACCACCACGAAGGTCAGCAGCAGCAGCATAGCCATCGGAGACGAGCTTCCAACTGGATTAATTCGCATATAAAAGGATCATCACCATCATCGTCGTCCAAGAACTGTAAACCCCCATCACCGTCACCGTCACCGTCATCGTCATCGTCATCAACCAGCTTAATAAAAAGTTGTGGCAGAAAGCGCGCACTTCTTTGCGGAGTGACATACCAGGAGCGCAAGTACAAACTCAAAGGCACTTACAATGATGTCAATAACATGAAACACTTGTTGATCAACACCTTTTATTTTCCAGACGACTGCATTCGCATACTATCAGAAAAAGAAGGGCAACCGAAAGAGCTGACTCCCACAAAGAAGAACATAGAGAAATCCCTGAAATGGCTTGTGGAGGGGTGCCAGGCAGGAGATTCGTTGGTGTTCTACTTCTCAGGACACGGACTCCGACAGCCCGATTTCAAAGACGACGAGGTTGACGGGTTCGACGAGACTATATGCCCTCTTGATTTCATGGAAGAGGGCATGATCCTTGACAATGATATCAATTCAACCATCGTTCACCCACTCAAGGAGGGCGTCACACTACATGCTATCGTTGATGCTTGTCATAGTGGAACAATTCTTGATCTACTCTACGTCTACGACCATAAAGGGAACAAGTGGAAGGATAATAGTCCTCCTTCTGGTGCTAGGAAAAGTACAAGTGGAGGGTTGGCAATTTGCATCAGTGCCTGCGAAGACGATAAAATGGCAGCAGATACAACTGCTTTTGATCGAAATGTAATGAATGGTGCCATGACATACATTCTTATTGAAATTATTAAGAACCACTCTGGTAAAGGCATTACGTATGGGGAACTGCTCGACTTGATGTTTGATCAAATTCAAAGGATTAATGGGGATAGATGCCTCAACTCCAGAATCTTGAGAAAAGTTTTTCGACACAAAATCATTCAGGGAGACGAACATCTTATTGGTGTTGGCCAGAGCAGTGACCATGTAATGGATCTAGAGGATCTGCAACAACATGAAATAGAACATCTGAAGCATGGTTCTGCTGCTGGGCAAGAATCTTTTATACTAGAGGAGGTACCGAATAGTTCAGAGATGCAAAAATCAGTTGGTTCCTCTGTCCAGTTTGAACCAGAAGAAGTGATGCTAAACATGGCTGGCAGCAATCAGCTTACAACTGCTTGTATGTGGTGTGGAGTAGATTTCAAACACTGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004175 GO:0004197 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008234 GO:0010941 GO:0010942 GO:0016787 GO:0019538 GO:0043067 GO:0043068 GO:0043170 GO:0044238 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0065007 GO:0070011 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_C14

Protein Analysis

463

Amino Acids

51.68

Weight (kDa)

6.42

Isoelectric Point (pI)

50.69

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_C14	PF00656	114 - 345	5.2e-29	Caspase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006934)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g28030 FvH4_5g28030
malus_domestica	MD05G1043500.v1.1 MD05G1043900.v1.1 MD10G1050900.v1.1
prunus_persica	Prupe.8G062700_v2.0.a1 Prupe.8G062700_v2.0.a1 Prupe.8G062700_v2.0.a1 Prupe.8G062700_v2.0.a1 Prupe.8G062700_v2.0.a1
pyrus_communis	pycom05g03590 pycom05g03600 pycom10g03580
rosa_chinensis	RchiOBHm_Chr6g0271771 RchiOBHm_Chr6g0271791
rosa_laevigata	RLG00000013716 RLG00000013731
rosa_multiflora	Rmu_sc0002396.1_g000009
rosa_roxburghii	Rroxscaffold_7G00196660
rosa_rugosa	Rorug06G0062400
rosa_samantha	Rh6BG186100 Rh6CG180800 Rh6CG181700
rosa_wichuraiana	Rw0G011900 Rw6G015540 Rw6G015550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	1252
AccB1I	GGYRCC	3 cut(s)	558, 953, 1252
AccB7I	CCANNNNNTGG	1 cut(s)	1165
AccI	GTMKAC	1 cut(s)	801
AccII	CGCG	1 cut(s)	348
AciI	CCGC	1 cut(s)	360
AclWI	GGATC	4 cut(s)	247, 682, 1176, 1185
AcoI	YGGCCR	1 cut(s)	1144
AcsI	RAATTY	1 cut(s)	1044
AcuI	CTGAAG	1 cut(s)	1226
AcyI	GRCGYC	1 cut(s)	738
AfaI	GTAC	3 cut(s)	386, 862, 1254
AfiI	CCNNNNNNNGG	4 cut(s)	543, 730, 845, 1165
AgsI	TTSAA	6 cut(s)	622, 711, 977, 1049, 1304, 1381
AjnI	CCWGG	2 cut(s)	372, 561
AjuI	GAANNNNNNNTTGG	2 cut(s)	1119, 1151
AluBI	AGCT	5 cut(s)	149, 209, 321, 505, 1345
AluI	AGCT	5 cut(s)	149, 209, 321, 505, 1345
Alw26I	GTCTC	4 cut(s)	128, 196, 644, 1116
AlwI	GGATC	4 cut(s)	247, 682, 1176, 1185
AlwNI	CAGNNNCTG	1 cut(s)	894
AoxI	GGCC	1 cut(s)	1144
ApeKI	GCWGC	7 cut(s)	105, 181, 184, 187, 914, 1220, 1335
ApoI	RAATTY	1 cut(s)	1044
ArsI	GACNNNNNNTTYG	2 cut(s)	1019, 1051
AseI	ATTAAT	2 cut(s)	222, 1056
Asp718I	GGTACC	1 cut(s)	1252
AspLEI	GCGC	3 cut(s)	348, 350, 381
AsuHPI	GGTGA	6 cut(s)	69, 237, 273, 279, 285, 713
BalI	TGGCCA	1 cut(s)	1146
BanI	GGYRCC	3 cut(s)	558, 953, 1252
BbsI	GAAGAC	1 cut(s)	906
BbvI	GCAGC	7 cut(s)	92, 193, 196, 199, 926, 1207, 1347
BccI	CCATC	4 cut(s)	204, 256, 286, 722
BcgI	CGANNNNNNTGC	4 cut(s)	179, 213, 555, 589
BciT130I	CCWGG	2 cut(s)	374, 563
BclI	TGATCA	2 cut(s)	435, 1039
BcoDI	GTCTC	4 cut(s)	128, 196, 644, 1116
BfaI	CTAG	3 cut(s)	852, 1172, 1244
BisI	GCNGC	7 cut(s)	106, 182, 185, 188, 915, 1221, 1336
BlsI	GCNGC	7 cut(s)	107, 183, 186, 189, 916, 1222, 1337
Bme1390I	CCNGG	2 cut(s)	374, 563
BmiI	GGNNCC	4 cut(s)	560, 955, 1254, 1288
BmrFI	CCNGG	2 cut(s)	374, 563
BmsI	GCATC	5 cut(s)	751, 894, 1058, 1260, 1308
BpiI	GAAGAC	1 cut(s)	906
BplI	GAGNNNNNCTC	2 cut(s)	37, 69
BpmI	CTGGAG	1 cut(s)	1063
BpuEI	CTTGAG	2 cut(s)	713, 1108
BsaAI	YACGTR	1 cut(s)	1011
BsaHI	GRCGYC	1 cut(s)	738
BsaXI	ACNNNNNCTCC	4 cut(s)	368, 398, 588, 618
Bsc4I	CCNNNNNNNGG	4 cut(s)	543, 730, 845, 1165
Bse1I	ACTGG	2 cut(s)	221, 1297
BseBI	CCWGG	2 cut(s)	374, 563
BseGI	GGATG	1 cut(s)	67
BseLI	CCNNNNNNNGG	4 cut(s)	543, 730, 845, 1165
BseMII	CTCAG	1 cut(s)	606
BseNI	ACTGG	2 cut(s)	221, 1297
BsePI	GCGCGC	1 cut(s)	346
BseRI	GAGGAG	1 cut(s)	1262
BseXI	GCAGC	7 cut(s)	92, 193, 196, 199, 926, 1207, 1347
BseYI	CCCAGC	2 cut(s)	159, 1223
Bsh1236I	CGCG	1 cut(s)	348
BshFI	GGCC	1 cut(s)	1146
BshNI	GGYRCC	3 cut(s)	558, 953, 1252
BslI	CCNNNNNNNGG	4 cut(s)	543, 730, 845, 1165
BsmAI	GTCTC	4 cut(s)	128, 196, 644, 1116
BsmBI	CGTCTC	3 cut(s)	128, 196, 1116
BsmI	GAATGC	1 cut(s)	465
BsnI	GGCC	1 cut(s)	1146
Bsp143I	GATC	9 cut(s)	151, 239, 435, 687, 787, 934, 1039, 1168, 1177
BspACI	CCGC	1 cut(s)	360
BspANI	GGCC	1 cut(s)	1146
BspCNI	CTCAG	1 cut(s)	605
BspFNI	CGCG	1 cut(s)	348
BspLI	GGNNCC	4 cut(s)	560, 955, 1254, 1288
BspPI	GGATC	4 cut(s)	247, 682, 1176, 1185
BspT107I	GGYRCC	3 cut(s)	558, 953, 1252
BsrI	ACTGG	2 cut(s)	221, 1297
BssHII	GCGCGC	1 cut(s)	346
BssMI	GATC	9 cut(s)	151, 239, 435, 687, 787, 934, 1039, 1168, 1177
BssNI	GRCGYC	1 cut(s)	738
Bst2UI	CCWGG	2 cut(s)	374, 563
Bst4CI	ACNGT	5 cut(s)	269, 285, 291, 297, 1388
Bst6I	CTCTTC	1 cut(s)	672
BstACI	GRCGYC	1 cut(s)	738
BstBAI	YACGTR	1 cut(s)	1011
BstC8I	GCNNGC	4 cut(s)	147, 348, 895, 1333
BstDEI	CTNAG	1 cut(s)	592
BstF5I	GGATG	1 cut(s)	67
BstFNI	CGCG	1 cut(s)	348
BstHHI	GCGC	3 cut(s)	348, 350, 381
BstKTI	GATC	9 cut(s)	154, 242, 438, 690, 790, 937, 1042, 1171, 1180
BstMAI	GTCTC	4 cut(s)	128, 196, 644, 1116
BstMBI	GATC	9 cut(s)	151, 239, 435, 687, 787, 934, 1039, 1168, 1177
BstMWI	GCNNNNNNNGC	3 cut(s)	155, 187, 345
BstNI	CCWGG	2 cut(s)	374, 563
BstNSI	RCATGY	1 cut(s)	752
BstSCI	CCNGG	2 cut(s)	372, 561
BstSNI	TACGTA	1 cut(s)	1011
BstUI	CGCG	1 cut(s)	348
BstV1I	GCAGC	7 cut(s)	92, 193, 196, 199, 926, 1207, 1347
BstV2I	GAAGAC	1 cut(s)	906
BstX2I	RGATCY	2 cut(s)	1168, 1177
BstYI	RGATCY	2 cut(s)	1168, 1177
BsuRI	GGCC	1 cut(s)	1146
BtsCI	GGATG	1 cut(s)	67
BtsI	GCAGTG	1 cut(s)	1159
BtsIMutI	CAGTG	3 cut(s)	895, 1159, 1384
Cac8I	GCNNGC	4 cut(s)	147, 348, 895, 1333
CaiI	CAGNNNCTG	1 cut(s)	894
CfoI	GCGC	3 cut(s)	348, 350, 381
CseI	GACGC	1 cut(s)	727
Csp6I	GTAC	3 cut(s)	385, 861, 1253
CviAII	CATG	9 cut(s)	421, 673, 685, 749, 958, 1160, 1190, 1211, 1327
CviQI	GTAC	3 cut(s)	385, 861, 1253
DdeI	CTNAG	1 cut(s)	592
DpnI	GATC	9 cut(s)	153, 241, 437, 689, 789, 936, 1041, 1170, 1179
DpnII	GATC	9 cut(s)	151, 239, 435, 687, 787, 934, 1039, 1168, 1177
EaeI	YGGCCR	1 cut(s)	1144
Eam1104I	CTCTTC	1 cut(s)	672
EarI	CTCTTC	1 cut(s)	672
Eco105I	TACGTA	1 cut(s)	1011
Eco32I	GATATC	1 cut(s)	703
Eco57I	CTGAAG	1 cut(s)	1226
EcoRII	CCWGG	2 cut(s)	372, 561
EcoRV	GATATC	1 cut(s)	703
Esp3I	CGTCTC	3 cut(s)	128, 196, 1116
FaeI	CATG	9 cut(s)	424, 676, 688, 752, 961, 1163, 1193, 1214, 1330
FatI	CATG	9 cut(s)	420, 672, 684, 748, 957, 1159, 1189, 1210, 1326
FbaI	TGATCA	2 cut(s)	435, 1039
FblI	GTMKAC	1 cut(s)	801
Fnu4HI	GCNGC	7 cut(s)	106, 182, 185, 188, 915, 1221, 1336
FokI	GGATG	1 cut(s)	54
Fsp4HI	GCNGC	7 cut(s)	106, 182, 185, 188, 915, 1221, 1336
FspBI	CTAG	3 cut(s)	852, 1172, 1244
GlaI	GCGC	3 cut(s)	347, 349, 380
GluI	GCNGC	7 cut(s)	106, 182, 185, 188, 915, 1221, 1336
GsaI	CCCAGC	2 cut(s)	163, 1227
GsuI	CTGGAG	1 cut(s)	1063
HaeIII	GGCC	1 cut(s)	1146
HgaI	GACGC	1 cut(s)	727
HhaI	GCGC	3 cut(s)	348, 350, 381
Hin1I	GRCGYC	1 cut(s)	738
Hin1II	CATG	9 cut(s)	424, 676, 688, 752, 961, 1163, 1193, 1214, 1330
Hin6I	GCGC	3 cut(s)	346, 348, 379
HinP1I	GCGC	3 cut(s)	346, 348, 379
HincII	GTYRAC	1 cut(s)	637
HindII	GTYRAC	1 cut(s)	637
HinfI	GANTC	5 cut(s)	508, 572, 603, 1083, 1232
HphI	GGTGA	6 cut(s)	69, 237, 273, 279, 285, 713
Hpy166II	GTNNAC	4 cut(s)	272, 637, 721, 802
Hpy188I	TCNGA	6 cut(s)	129, 201, 481, 608, 1206, 1267
Hpy188III	TCNNGA	7 cut(s)	455, 594, 665, 785, 1080, 1087, 1172
Hpy8I	GTNNAC	4 cut(s)	272, 637, 721, 802
Hpy99I	CGWCG	3 cut(s)	259, 632, 650
HpyAV	CCTTC	4 cut(s)	167, 482, 820, 852
HpyCH4III	ACNGT	5 cut(s)	269, 285, 291, 297, 1388
HpyCH4IV	ACGT	2 cut(s)	798, 1010
HpyCH4V	TGCA	5 cut(s)	39, 465, 885, 1183, 1273
HpyF10VI	GCNNNNNNNGC	3 cut(s)	155, 187, 345
HpyF3I	CTNAG	1 cut(s)	592
HpySE526I	ACGT	2 cut(s)	798, 1010
Hsp92I	GRCGYC	1 cut(s)	738
Hsp92II	CATG	9 cut(s)	424, 676, 688, 752, 961, 1163, 1193, 1214, 1330
HspAI	GCGC	3 cut(s)	346, 348, 379
KpnI	GGTACC	1 cut(s)	1256
Ksp22I	TGATCA	2 cut(s)	435, 1039
Kzo9I	GATC	9 cut(s)	151, 239, 435, 687, 787, 934, 1039, 1168, 1177
LmnI	GCTCC	1 cut(s)	376
Lsp1109I	GCAGC	7 cut(s)	92, 193, 196, 199, 926, 1207, 1347
LweI	GCATC	5 cut(s)	751, 894, 1058, 1260, 1308
MaeI	CTAG	3 cut(s)	852, 1172, 1244
MaeII	ACGT	2 cut(s)	798, 1010
MaeIII	GTNAC	6 cut(s)	91, 285, 291, 364, 739, 1154
MalI	GATC	9 cut(s)	153, 241, 437, 689, 789, 936, 1041, 1170, 1179
MboI	GATC	9 cut(s)	151, 239, 435, 687, 787, 934, 1039, 1168, 1177
MboII	GAAGA	4 cut(s)	532, 689, 911, 1322
MfeI	CAATTG	1 cut(s)	25
MflI	RGATCY	2 cut(s)	1168, 1177
MlsI	TGGCCA	1 cut(s)	1146
MluCI	AATT	7 cut(s)	25, 223, 706, 780, 879, 978, 1044
MluNI	TGGCCA	1 cut(s)	1146
MlyI	GAGTC	2 cut(s)	502, 597
MmeI	TCCRAC	3 cut(s)	95, 237, 631
Mox20I	TGGCCA	1 cut(s)	1146
MscI	TGGCCA	1 cut(s)	1146
MseI	TTAA	5 cut(s)	123, 222, 323, 984, 1056
MslI	CAYNNNNRTG	1 cut(s)	14
Msp20I	TGGCCA	1 cut(s)	1146
MspA1I	CMGCKG	1 cut(s)	149
MspR9I	CCNGG	2 cut(s)	374, 563
MunI	CAATTG	1 cut(s)	25
Mva1269I	GAATGC	1 cut(s)	465
MvaI	CCWGG	2 cut(s)	374, 563
MvnI	CGCG	1 cut(s)	348
MwoI	GCNNNNNNNGC	3 cut(s)	155, 187, 345
NdeII	GATC	9 cut(s)	151, 239, 435, 687, 787, 934, 1039, 1168, 1177
NlaIII	CATG	9 cut(s)	424, 676, 688, 752, 961, 1163, 1193, 1214, 1330
NlaIV	GGNNCC	4 cut(s)	560, 955, 1254, 1288
NmuCI	GTSAC	5 cut(s)	285, 291, 364, 739, 1154
NspI	RCATGY	1 cut(s)	752
PauI	GCGCGC	1 cut(s)	346
PcsI	WCGNNNNNNNCGW	1 cut(s)	645
PctI	GAATGC	1 cut(s)	465
PfeI	GAWTC	3 cut(s)	572, 1083, 1232
PflMI	CCANNNNNTGG	1 cut(s)	1165
PkrI	GCNGC	7 cut(s)	107, 183, 186, 189, 916, 1222, 1337
PleI	GAGTC	2 cut(s)	502, 597
PpsI	GAGTC	2 cut(s)	502, 597
Ppu21I	YACGTR	1 cut(s)	1011
PshBI	ATTAAT	2 cut(s)	222, 1056
Psp6I	CCWGG	2 cut(s)	372, 561
PspFI	CCCAGC	2 cut(s)	159, 1223
PspGI	CCWGG	2 cut(s)	372, 561
PspN4I	GGNNCC	4 cut(s)	560, 955, 1254, 1288
PstNI	CAGNNNCTG	1 cut(s)	894
PsuI	RGATCY	2 cut(s)	1168, 1177
PteI	GCGCGC	1 cut(s)	346
PvuII	CAGCTG	1 cut(s)	149
RsaI	GTAC	3 cut(s)	386, 862, 1254
RsaNI	GTAC	3 cut(s)	385, 861, 1253
RseI	CAYNNNNRTG	1 cut(s)	14
SaqAI	TTAA	5 cut(s)	123, 222, 323, 984, 1056
SatI	GCNGC	7 cut(s)	106, 182, 185, 188, 915, 1221, 1336
Sau3AI	GATC	9 cut(s)	151, 239, 435, 687, 787, 934, 1039, 1168, 1177
SchI	GAGTC	2 cut(s)	502, 597
ScrFI	CCNGG	2 cut(s)	374, 563
SfaNI	GCATC	5 cut(s)	751, 894, 1058, 1260, 1308
SmiMI	CAYNNNNRTG	1 cut(s)	14
SmlI	CTYRAG	2 cut(s)	728, 1087
SmoI	CTYRAG	2 cut(s)	728, 1087
SnaBI	TACGTA	1 cut(s)	1011
Sse9I	AATT	7 cut(s)	25, 223, 706, 780, 879, 978, 1044
SsiI	CCGC	1 cut(s)	360
SspMI	CTAG	3 cut(s)	852, 1172, 1244
StyD4I	CCNGG	2 cut(s)	372, 561
TaaI	ACNGT	5 cut(s)	269, 285, 291, 297, 1388
TaiI	ACGT	2 cut(s)	801, 1013
TaqI	TCGA	4 cut(s)	645, 937, 1026, 1102
TasI	AATT	7 cut(s)	25, 223, 706, 780, 879, 978, 1044
TatI	WGTACW	2 cut(s)	384, 860
TfiI	GAWTC	3 cut(s)	572, 1083, 1232
Tru1I	TTAA	5 cut(s)	123, 222, 323, 984, 1056
Tru9I	TTAA	5 cut(s)	123, 222, 323, 984, 1056
TscAI	CASTG	3 cut(s)	895, 1159, 1391
TseFI	GTSAC	5 cut(s)	285, 291, 364, 739, 1154
TseI	GCWGC	7 cut(s)	105, 181, 184, 187, 914, 1220, 1335
Tsp45I	GTSAC	5 cut(s)	285, 291, 364, 739, 1154
TspDTI	ATGAA	4 cut(s)	437, 661, 962, 1206
TspGWI	ACGGA	1 cut(s)	615
TspRI	CASTG	3 cut(s)	895, 1159, 1391
Van91I	CCANNNNNTGG	1 cut(s)	1165
VspI	ATTAAT	2 cut(s)	222, 1056
XapI	RAATTY	1 cut(s)	1044
XbaI	TCTAGA	1 cut(s)	1171
XceI	RCATGY	1 cut(s)	752
XmiI	GTMKAC	1 cut(s)	801
XspI	CTAG	3 cut(s)	852, 1172, 1244

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.