Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0006934

Physical Location & Seq

Genomic Coordinates Forward (+)

28855109 .. 28857108

Gene Structure 2000 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG180800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1116 bp

ATGACCACCAATTGTAGCAATTGCAAGACGAGGCTTCCTCATCTAACCTCTCATCCAACCTCACCAATACCCCGTGTTACTCAATATCGCTGCTTCTGTGGTTATGTTAATCTGATTGAGACGACCAAGCCAGCTGATCTTGCCCAGCACCACCACGAAGGTCAGCAGCAGCAGCATAGCCATCGGAGACGAGCTTCCAGCTGGATTAATTCGCATATAAAGGGATCATCACCGTCATCGTCATCGTCATCAACCAGCTTAATAAAAAGCTGTGGCAGAAAGCGCGCACTTCTTTGCGGAGTGACATACCAGGAGCGCAAGTACAAACTCAAAGGCACTTACAATGATGTCAATAACATGAAAAACTTGTTGATCAACACCTTTTGTTTTCCAGCCGACTGCATTCGCATACTATTAGAAGAAGAAGGGCAACCGAAAGAGCTGACTCCCACAAAGAAGAACATAGAGAAATCCCTGAAATGGCTTGTGGAGGGGTGCCAGGCAGGAGATTCGTTGGTGTTCTACTTCTCAGGACACGGACTCCGACAGCCCGATTTCAAAGACGACGAGGTTGACGGGTTCGACGAGACTATATGCCCTCTTGATTTCATGGAAGAGGGCATGATCCTTGACAATGATATCAATTCAACCATCGTTCAGCCACTCAAGGAGGGCGTCACACTACATGCTATCGTTGATGCTTGTCATAGTGGAACAATTCTTGATCTACTCTACGTCTACGACCATAAAGGGTACAAGTGGAAGGATAATAGGCCTCCTTCTGGTGCTAGGAAAAGTACAAGTGGAGGGTTGGCAATTTGCATCAGTGCCTGCGAAGACGATAAAATGGCAGCAGATACAACTGCTTTTGATCGAAATGTAATGAATGGTGCCATGACATACATTCTTATTGAAATTATTAAGAAGCACTCTGGTAAAGGCATAACGTATGGAGAACTGCTCGACTTGATGTTTGATCAAATTCAAAGCATTAATGGGGATAGATGCCTCAACTCCAGAATCTTGAGAAAAGTTTTTCGACACAAAATCATTCAGCAACCTTTATTGTCATCGTCCGAAGACTTCGATGCATACAAGAAGAAATTTCTCTTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004175 GO:0004197 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008234 GO:0010941 GO:0010942 GO:0016787 GO:0019538 GO:0043067 GO:0043068 GO:0043170 GO:0044238 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0065007 GO:0070011 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_C14

Protein Analysis

371

Amino Acids

41.83

Weight (kDa)

8.3

Isoelectric Point (pI)

45.16

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_C14	PF00656	93 - 329	4.6e-30	Caspase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006934)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g28030 FvH4_5g28030
malus_domestica	MD05G1043500.v1.1 MD05G1043900.v1.1 MD10G1050900.v1.1
prunus_persica	Prupe.8G062700_v2.0.a1 Prupe.8G062700_v2.0.a1 Prupe.8G062700_v2.0.a1 Prupe.8G062700_v2.0.a1 Prupe.8G062700_v2.0.a1
pyrus_communis	pycom05g03590 pycom05g03600 pycom10g03580
rosa_chinensis	RchiOBHm_Chr6g0271771 RchiOBHm_Chr6g0271791
rosa_laevigata	RLG00000013716 RLG00000013731
rosa_multiflora	Rmu_sc0002396.1_g000009
rosa_roxburghii	Rroxscaffold_7G00196660
rosa_rugosa	Rorug06G0062400
rosa_samantha	Rh6BG186100 Rh6CG180800 Rh6CG181700
rosa_wichuraiana	Rw0G011900 Rw6G015540 Rw6G015550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	495, 890
AccI	GTMKAC	1 cut(s)	738
AccII	CGCG	1 cut(s)	285
AciI	CCGC	1 cut(s)	297
AclWI	GGATC	2 cut(s)	232, 619
AcsI	RAATTY	2 cut(s)	981, 1103
AcyI	GRCGYC	1 cut(s)	675
AfaI	GTAC	3 cut(s)	323, 755, 799
AfiI	CCNNNNNNNGG	2 cut(s)	480, 782
AgsI	TTSAA	4 cut(s)	559, 648, 914, 986
AjnI	CCWGG	2 cut(s)	309, 498
AluBI	AGCT	6 cut(s)	134, 194, 201, 258, 270, 442
AluI	AGCT	6 cut(s)	134, 194, 201, 258, 270, 442
Alw26I	GTCTC	3 cut(s)	113, 181, 581
AlwI	GGATC	2 cut(s)	232, 619
AlwNI	CAGNNNCTG	1 cut(s)	831
AoxI	GGCC	1 cut(s)	773
ApeKI	GCWGC	5 cut(s)	90, 166, 169, 172, 851
ApoI	RAATTY	2 cut(s)	981, 1103
ArsI	GACNNNNNNTTYG	2 cut(s)	956, 988
AseI	ATTAAT	2 cut(s)	207, 993
AspLEI	GCGC	3 cut(s)	285, 287, 318
AsuHPI	GGTGA	2 cut(s)	54, 222
BanI	GGYRCC	2 cut(s)	495, 890
BbsI	GAAGAC	2 cut(s)	843, 1086
BbvI	GCAGC	5 cut(s)	77, 178, 181, 184, 863
BccI	CCATC	2 cut(s)	189, 659
BcgI	CGANNNNNNTGC	4 cut(s)	164, 198, 492, 526
BciT130I	CCWGG	2 cut(s)	311, 500
BclI	TGATCA	2 cut(s)	372, 976
BcoDI	GTCTC	3 cut(s)	113, 181, 581
BfaI	CTAG	1 cut(s)	789
BisI	GCNGC	5 cut(s)	91, 167, 170, 173, 852
BlsI	GCNGC	5 cut(s)	92, 168, 171, 174, 853
Bme1390I	CCNGG	2 cut(s)	311, 500
BmiI	GGNNCC	2 cut(s)	497, 892
BmrFI	CCNGG	2 cut(s)	311, 500
BmsI	GCATC	4 cut(s)	688, 831, 995, 1078
BpiI	GAAGAC	2 cut(s)	843, 1086
BplI	GAGNNNNNCTC	4 cut(s)	22, 54, 945, 977
BpmI	CTGGAG	1 cut(s)	1000
BpuEI	CTTGAG	2 cut(s)	650, 1045
BsaHI	GRCGYC	1 cut(s)	675
BsaXI	ACNNNNNCTCC	4 cut(s)	305, 335, 525, 555
Bsc4I	CCNNNNNNNGG	2 cut(s)	480, 782
BseBI	CCWGG	2 cut(s)	311, 500
BseGI	GGATG	1 cut(s)	52
BseLI	CCNNNNNNNGG	2 cut(s)	480, 782
BseMII	CTCAG	1 cut(s)	543
BsePI	GCGCGC	1 cut(s)	283
BseXI	GCAGC	5 cut(s)	77, 178, 181, 184, 863
BseYI	CCCAGC	1 cut(s)	144
Bsh1236I	CGCG	1 cut(s)	285
BshFI	GGCC	1 cut(s)	775
BshNI	GGYRCC	2 cut(s)	495, 890
BslI	CCNNNNNNNGG	2 cut(s)	480, 782
BsmAI	GTCTC	3 cut(s)	113, 181, 581
BsmBI	CGTCTC	2 cut(s)	113, 181
BsmI	GAATGC	1 cut(s)	402
BsnI	GGCC	1 cut(s)	775
Bsp143I	GATC	7 cut(s)	136, 224, 372, 624, 724, 871, 976
BspACI	CCGC	1 cut(s)	297
BspANI	GGCC	1 cut(s)	775
BspCNI	CTCAG	1 cut(s)	542
BspFNI	CGCG	1 cut(s)	285
BspLI	GGNNCC	2 cut(s)	497, 892
BspPI	GGATC	2 cut(s)	232, 619
BspT107I	GGYRCC	2 cut(s)	495, 890
BssHII	GCGCGC	1 cut(s)	283
BssMI	GATC	7 cut(s)	136, 224, 372, 624, 724, 871, 976
BssNI	GRCGYC	1 cut(s)	675
Bst2UI	CCWGG	2 cut(s)	311, 500
Bst4CI	ACNGT	1 cut(s)	234
Bst6I	CTCTTC	1 cut(s)	609
BstACI	GRCGYC	1 cut(s)	675
BstC8I	GCNNGC	3 cut(s)	132, 285, 832
BstDEI	CTNAG	1 cut(s)	529
BstF5I	GGATG	1 cut(s)	52
BstFNI	CGCG	1 cut(s)	285
BstHHI	GCGC	3 cut(s)	285, 287, 318
BstKTI	GATC	7 cut(s)	139, 227, 375, 627, 727, 874, 979
BstMAI	GTCTC	3 cut(s)	113, 181, 581
BstMBI	GATC	7 cut(s)	136, 224, 372, 624, 724, 871, 976
BstMWI	GCNNNNNNNGC	3 cut(s)	140, 172, 282
BstNI	CCWGG	2 cut(s)	311, 500
BstNSI	RCATGY	1 cut(s)	689
BstSCI	CCNGG	2 cut(s)	309, 498
BstUI	CGCG	1 cut(s)	285
BstV1I	GCAGC	5 cut(s)	77, 178, 181, 184, 863
BstV2I	GAAGAC	2 cut(s)	843, 1086
BsuRI	GGCC	1 cut(s)	775
BtsCI	GGATG	1 cut(s)	52
BtsIMutI	CAGTG	1 cut(s)	832
Cac8I	GCNNGC	3 cut(s)	132, 285, 832
CaiI	CAGNNNCTG	1 cut(s)	831
CfoI	GCGC	3 cut(s)	285, 287, 318
CseI	GACGC	1 cut(s)	664
Csp6I	GTAC	3 cut(s)	322, 754, 798
CviAII	CATG	5 cut(s)	358, 610, 622, 686, 895
CviQI	GTAC	3 cut(s)	322, 754, 798
DdeI	CTNAG	1 cut(s)	529
DpnI	GATC	7 cut(s)	138, 226, 374, 626, 726, 873, 978
DpnII	GATC	7 cut(s)	136, 224, 372, 624, 724, 871, 976
Eam1104I	CTCTTC	1 cut(s)	609
EarI	CTCTTC	1 cut(s)	609
Eco147I	AGGCCT	1 cut(s)	775
Eco32I	GATATC	1 cut(s)	640
EcoRII	CCWGG	2 cut(s)	309, 498
EcoRV	GATATC	1 cut(s)	640
EcoT22I	ATGCAT	1 cut(s)	1093
Esp3I	CGTCTC	2 cut(s)	113, 181
FaeI	CATG	5 cut(s)	361, 613, 625, 689, 898
FatI	CATG	5 cut(s)	357, 609, 621, 685, 894
FbaI	TGATCA	2 cut(s)	372, 976
FblI	GTMKAC	1 cut(s)	738
Fnu4HI	GCNGC	5 cut(s)	91, 167, 170, 173, 852
FokI	GGATG	1 cut(s)	39
Fsp4HI	GCNGC	5 cut(s)	91, 167, 170, 173, 852
FspBI	CTAG	1 cut(s)	789
GlaI	GCGC	3 cut(s)	284, 286, 317
GluI	GCNGC	5 cut(s)	91, 167, 170, 173, 852
GsaI	CCCAGC	1 cut(s)	148
GsuI	CTGGAG	1 cut(s)	1000
HaeIII	GGCC	1 cut(s)	775
HgaI	GACGC	1 cut(s)	664
HhaI	GCGC	3 cut(s)	285, 287, 318
Hin1I	GRCGYC	1 cut(s)	675
Hin1II	CATG	5 cut(s)	361, 613, 625, 689, 898
Hin6I	GCGC	3 cut(s)	283, 285, 316
HinP1I	GCGC	3 cut(s)	283, 285, 316
HincII	GTYRAC	1 cut(s)	574
HindII	GTYRAC	1 cut(s)	574
HinfI	GANTC	4 cut(s)	445, 509, 540, 1020
HphI	GGTGA	2 cut(s)	54, 222
Hpy166II	GTNNAC	2 cut(s)	574, 739
Hpy188I	TCNGA	4 cut(s)	114, 186, 545, 1078
Hpy188III	TCNNGA	5 cut(s)	531, 602, 722, 1017, 1024
Hpy8I	GTNNAC	2 cut(s)	574, 739
Hpy99I	CGWCG	2 cut(s)	569, 587
HpyAV	CCTTC	4 cut(s)	152, 419, 757, 789
HpyCH4III	ACNGT	1 cut(s)	234
HpyCH4IV	ACGT	2 cut(s)	735, 947
HpyCH4V	TGCA	4 cut(s)	24, 402, 822, 1091
HpyF10VI	GCNNNNNNNGC	3 cut(s)	140, 172, 282
HpyF3I	CTNAG	1 cut(s)	529
HpySE526I	ACGT	2 cut(s)	735, 947
Hsp92I	GRCGYC	1 cut(s)	675
Hsp92II	CATG	5 cut(s)	361, 613, 625, 689, 898
HspAI	GCGC	3 cut(s)	283, 285, 316
Ksp22I	TGATCA	2 cut(s)	372, 976
Kzo9I	GATC	7 cut(s)	136, 224, 372, 624, 724, 871, 976
LmnI	GCTCC	1 cut(s)	313
Lsp1109I	GCAGC	5 cut(s)	77, 178, 181, 184, 863
LweI	GCATC	4 cut(s)	688, 831, 995, 1078
MaeI	CTAG	1 cut(s)	789
MaeII	ACGT	2 cut(s)	735, 947
MaeIII	GTNAC	3 cut(s)	76, 301, 676
MalI	GATC	7 cut(s)	138, 226, 374, 626, 726, 873, 978
MboI	GATC	7 cut(s)	136, 224, 372, 624, 724, 871, 976
MboII	GAAGA	7 cut(s)	431, 434, 469, 626, 848, 1091, 1111
MfeI	CAATTG	2 cut(s)	10, 19
MluCI	AATT	9 cut(s)	10, 19, 208, 643, 717, 816, 915, 981, 1103
MlyI	GAGTC	2 cut(s)	439, 534
MmeI	TCCRAC	2 cut(s)	80, 568
Mph1103I	ATGCAT	1 cut(s)	1093
MseI	TTAA	5 cut(s)	108, 207, 260, 921, 993
MspA1I	CMGCKG	2 cut(s)	134, 201
MspR9I	CCNGG	2 cut(s)	311, 500
MunI	CAATTG	2 cut(s)	10, 19
Mva1269I	GAATGC	1 cut(s)	402
MvaI	CCWGG	2 cut(s)	311, 500
MvnI	CGCG	1 cut(s)	285
MwoI	GCNNNNNNNGC	3 cut(s)	140, 172, 282
NdeII	GATC	7 cut(s)	136, 224, 372, 624, 724, 871, 976
NlaIII	CATG	5 cut(s)	361, 613, 625, 689, 898
NlaIV	GGNNCC	2 cut(s)	497, 892
NmuCI	GTSAC	2 cut(s)	301, 676
NsiI	ATGCAT	1 cut(s)	1093
NspI	RCATGY	1 cut(s)	689
PauI	GCGCGC	1 cut(s)	283
PceI	AGGCCT	1 cut(s)	775
PcsI	WCGNNNNNNNCGW	1 cut(s)	582
PctI	GAATGC	1 cut(s)	402
PfeI	GAWTC	2 cut(s)	509, 1020
PkrI	GCNGC	5 cut(s)	92, 168, 171, 174, 853
PleI	GAGTC	2 cut(s)	439, 534
PpsI	GAGTC	2 cut(s)	439, 534
PshBI	ATTAAT	2 cut(s)	207, 993
Psp6I	CCWGG	2 cut(s)	309, 498
PspFI	CCCAGC	1 cut(s)	144
PspGI	CCWGG	2 cut(s)	309, 498
PspN4I	GGNNCC	2 cut(s)	497, 892
PstNI	CAGNNNCTG	1 cut(s)	831
PteI	GCGCGC	1 cut(s)	283
PvuII	CAGCTG	2 cut(s)	134, 201
RsaI	GTAC	3 cut(s)	323, 755, 799
RsaNI	GTAC	3 cut(s)	322, 754, 798
SaqAI	TTAA	5 cut(s)	108, 207, 260, 921, 993
SatI	GCNGC	5 cut(s)	91, 167, 170, 173, 852
Sau3AI	GATC	7 cut(s)	136, 224, 372, 624, 724, 871, 976
SchI	GAGTC	2 cut(s)	439, 534
ScrFI	CCNGG	2 cut(s)	311, 500
SfaNI	GCATC	4 cut(s)	688, 831, 995, 1078
SmlI	CTYRAG	2 cut(s)	665, 1024
SmoI	CTYRAG	2 cut(s)	665, 1024
Sse9I	AATT	9 cut(s)	10, 19, 208, 643, 717, 816, 915, 981, 1103
SseBI	AGGCCT	1 cut(s)	775
SsiI	CCGC	1 cut(s)	297
SspMI	CTAG	1 cut(s)	789
StuI	AGGCCT	1 cut(s)	775
StyD4I	CCNGG	2 cut(s)	309, 498
TaaI	ACNGT	1 cut(s)	234
TaiI	ACGT	2 cut(s)	738, 950
TaqI	TCGA	5 cut(s)	582, 874, 963, 1039, 1086
TasI	AATT	9 cut(s)	10, 19, 208, 643, 717, 816, 915, 981, 1103
TatI	WGTACW	2 cut(s)	321, 797
TfiI	GAWTC	2 cut(s)	509, 1020
Tru1I	TTAA	5 cut(s)	108, 207, 260, 921, 993
Tru9I	TTAA	5 cut(s)	108, 207, 260, 921, 993
TscAI	CASTG	1 cut(s)	832
TseFI	GTSAC	2 cut(s)	301, 676
TseI	GCWGC	5 cut(s)	90, 166, 169, 172, 851
Tsp45I	GTSAC	2 cut(s)	301, 676
TspDTI	ATGAA	3 cut(s)	374, 598, 899
TspGWI	ACGGA	1 cut(s)	552
TspRI	CASTG	1 cut(s)	832
VspI	ATTAAT	2 cut(s)	207, 993
XapI	RAATTY	2 cut(s)	981, 1103
XceI	RCATGY	1 cut(s)	689
XmiI	GTMKAC	1 cut(s)	738
XspI	CTAG	1 cut(s)	789
Zsp2I	ATGCAT	1 cut(s)	1093

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.