Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0006934

Physical Location & Seq

Genomic Coordinates Forward (+)

4148747 .. 4151788

Gene Structure 3042 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g03590.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1188 bp

ATGGCAAGCAAAAAAATCACTTGCCCTAGTTGCAAGCAATGGGTTCAAATGACGCTGTATGCCACACAGCACCGATGCGTCTGCGGTCATGTAATCACGACTCGCAGTGCTGCTGCAGAAACACAACGAGAAACTAGTATTCATGGTCATGGAGATCAGAAACGTGAGCGTCATAGCTTGCGGAGACGGTTTGGTAGGTGTTTTCAAACCAAGGAATCATCATCAAACAATTCTTCTAGTACTTGTAGTTCAAGTCGTAATAGTTTCAAGCAATCAGGGACAGGGACAGGGACGCGGATGTCGTTGCCCTCCTCCAGCTCGGAGGAGCAAGTACCCAGTGGATCACGAGCAAACAAGCGTGCACTTCTTTGCGGGGTGACATACAAGCAACATAAATACAAGCTCAAAGGCACTTATAATGATGTGAAAAACATGGAAAACTTGCTGACTAAGACCTTCGGTTTTCCTGCCAACTGCATACGCATACTTTCAGAAGATGATCGATCGCTAGACCTAGAGCAGATTCCTACAAAGAAAAATATAGAAAATTCCTTGAAATGGCTTGTGGAGGGATGCCAGCGGGGAGACTCGTTGGTGTTTTACTTCTCGGGGCATGGCCTACGACAGCCTGATTTCAAAGACGATGAGCTTGATGGGTTCGACGAGACCATTTGCCCGGTTGATTTTATGAAAGAGGGAATGATCCTTGACAATGATATTAATGAAACCATTGTTTGGCCACTCGAGGATGGTGTCACACTTCACGCTATTGTTGATGCTTGTCACAGTGGAACGATTCTTGATCTGGAGCATGTGTATGACCGTAAACTGAATGCTTGGAAAGATAATAGTCCTCCATCTCGTGCTAGAAAAAGTACAAAGGGTGGGTTAGCGATTTCTCTTAGTGCTTGCGAAGATGATAAAATGGCAGCTGATACTACTGCTTTTGCTGGAAAATCAATGAATGGTGCAATGACATACATTCTCACTGAAACTGTTAGGAACAAGACCGACATAACATATGGAGATTTGCTCGACGAGATGGTGAAGTACATTAAAAAGATTAACAGCGAAAGATGGACTAACTCAAGATTCTTGAGGACTGTACTTCGACACAAAACCATACAGGAACCTATGTTGTCATCTTCTGAAACGTTTGATGTTAATTTGAAGAAATTTGTCTTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004175 GO:0004197 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008234 GO:0010941 GO:0010942 GO:0016787 GO:0019538 GO:0043067 GO:0043068 GO:0043170 GO:0044238 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0065007 GO:0070011 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_C14

Protein Analysis

396

Amino Acids

44.5

Weight (kDa)

8.71

Isoelectric Point (pI)

52.02

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006934)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g28030 FvH4_5g28030
malus_domestica	MD05G1043500.v1.1 MD05G1043900.v1.1 MD10G1050900.v1.1
prunus_persica	Prupe.8G062700_v2.0.a1 Prupe.8G062700_v2.0.a1 Prupe.8G062700_v2.0.a1 Prupe.8G062700_v2.0.a1 Prupe.8G062700_v2.0.a1
pyrus_communis	pycom05g03590 pycom05g03600 pycom10g03580
rosa_chinensis	RchiOBHm_Chr6g0271771 RchiOBHm_Chr6g0271791
rosa_laevigata	RLG00000013716 RLG00000013731
rosa_multiflora	Rmu_sc0002396.1_g000009
rosa_roxburghii	Rroxscaffold_7G00196660
rosa_rugosa	Rorug06G0062400
rosa_samantha	Rh6BG186100 Rh6CG180800 Rh6CG181700
rosa_wichuraiana	Rw0G011900 Rw6G015540 Rw6G015550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	417
AasI	GACNNNNNNGTC	1 cut(s)	298
AccB7I	CCANNNNNTGG	1 cut(s)	735
AccII	CGCG	1 cut(s)	295
AciI	CCGC	5 cut(s)	84, 181, 295, 372, 580
AclI	AACGTT	1 cut(s)	1154
AclWI	GGATC	2 cut(s)	349, 697
AcoI	YGGCCR	1 cut(s)	737
AcsI	RAATTY	2 cut(s)	547, 1175
AfaI	GTAC	5 cut(s)	241, 333, 877, 1052, 1107
AfiI	CCNNNNNNNGG	2 cut(s)	558, 735
AgsI	TTSAA	7 cut(s)	47, 206, 252, 268, 556, 637, 1171
AhlI	ACTAGT	1 cut(s)	134
AluBI	AGCT	5 cut(s)	177, 318, 403, 649, 932
AluI	AGCT	5 cut(s)	177, 318, 403, 649, 932
Alw21I	GWGCWC	1 cut(s)	364
Alw26I	GTCTC	3 cut(s)	178, 579, 659
Alw44I	GTGCAC	1 cut(s)	360
AlwI	GGATC	2 cut(s)	349, 697
Ama87I	CYCGRG	2 cut(s)	607, 743
AoxI	GGCC	2 cut(s)	616, 737
ApaLI	GTGCAC	1 cut(s)	360
ApeKI	GCWGC	3 cut(s)	110, 113, 929
ApoI	RAATTY	2 cut(s)	547, 1175
AseI	ATTAAT	1 cut(s)	720
AsuC2I	CCSGG	1 cut(s)	677
AsuHPI	GGTGA	2 cut(s)	388, 1057
AvaI	CYCGRG	2 cut(s)	607, 743
BaeGI	GKGCMC	1 cut(s)	364
BalI	TGGCCA	1 cut(s)	739
BauI	CACGAG	2 cut(s)	345, 861
Bbv12I	GWGCWC	1 cut(s)	364
BbvI	GCAGC	3 cut(s)	97, 100, 941
BccI	CCATC	5 cut(s)	647, 743, 865, 1036, 1071
BcgI	CGANNNNNNTGC	2 cut(s)	63, 97
BcnI	CCSGG	1 cut(s)	677
BcoDI	GTCTC	3 cut(s)	178, 579, 659
BcuI	ACTAGT	1 cut(s)	134
BfaI	CTAG	6 cut(s)	27, 135, 237, 509, 515, 867
BfmI	CTRYAG	1 cut(s)	114
BisI	GCNGC	3 cut(s)	111, 114, 930
BlsI	GCNGC	3 cut(s)	112, 115, 931
BmcAI	AGTACT	1 cut(s)	241
Bme1390I	CCNGG	1 cut(s)	677
BmeT110I	CYCGRG	2 cut(s)	607, 743
BmiI	GGNNCC	1 cut(s)	1131
BmrFI	CCNGG	1 cut(s)	677
BmrI	ACTGGG	1 cut(s)	330
BmsI	GCATC	3 cut(s)	65, 563, 766
BmuI	ACTGGG	1 cut(s)	330
BplI	GAGNNNNNCTC	2 cut(s)	1017, 1049
BpmI	CTGGAG	2 cut(s)	298, 827
BpuEI	CTTGAG	2 cut(s)	1072, 1117
BpuMI	CCSGG	1 cut(s)	677
Bsa29I	ATCGAT	1 cut(s)	502
BsaI	GGTCTC	1 cut(s)	659
BsaJI	CCNNGG	1 cut(s)	210
BsaXI	ACNNNNNCTCC	2 cut(s)	800, 830
Bsc4I	CCNNNNNNNGG	2 cut(s)	558, 735
Bse1I	ACTGG	1 cut(s)	336
Bse3DI	GCAATG	2 cut(s)	44, 978
BseCI	ATCGAT	1 cut(s)	502
BseDI	CCNNGG	1 cut(s)	210
BseGI	GGATG	3 cut(s)	303, 578, 754
BseLI	CCNNNNNNNGG	2 cut(s)	558, 735
BseMI	GCAATG	2 cut(s)	44, 978
BseNI	ACTGG	1 cut(s)	336
BseRI	GAGGAG	2 cut(s)	301, 338
BseSI	GKGCMC	1 cut(s)	364
BseXI	GCAGC	3 cut(s)	97, 100, 941
Bsh1236I	CGCG	1 cut(s)	295
Bsh1285I	CGRYCG	1 cut(s)	506
BshFI	GGCC	2 cut(s)	618, 739
BshVI	ATCGAT	1 cut(s)	502
BsiEI	CGRYCG	1 cut(s)	506
BsiHKAI	GWGCWC	1 cut(s)	364
BsiHKCI	CYCGRG	2 cut(s)	607, 743
BsiSI	CCGG	1 cut(s)	677
BslFI	GGGAC	3 cut(s)	292, 298, 304
BslI	CCNNNNNNNGG	2 cut(s)	558, 735
BsmAI	GTCTC	3 cut(s)	178, 579, 659
BsmBI	CGTCTC	1 cut(s)	178
BsmFI	GGGAC	3 cut(s)	292, 298, 304
BsmI	GAATGC	1 cut(s)	838
BsnI	GGCC	2 cut(s)	618, 739
Bso31I	GGTCTC	1 cut(s)	659
BsoBI	CYCGRG	2 cut(s)	607, 743
Bsp1286I	GDGCHC	1 cut(s)	364
Bsp143I	GATC	6 cut(s)	154, 341, 499, 503, 702, 802
BspACI	CCGC	5 cut(s)	84, 181, 295, 372, 580
BspANI	GGCC	2 cut(s)	618, 739
BspDI	ATCGAT	1 cut(s)	502
BspFNI	CGCG	1 cut(s)	295
BspLI	GGNNCC	1 cut(s)	1131
BspMAI	CTGCAG	1 cut(s)	118
BspPI	GGATC	2 cut(s)	349, 697
BspTNI	GGTCTC	1 cut(s)	659
BsrDI	GCAATG	2 cut(s)	44, 978
BsrI	ACTGG	1 cut(s)	336
BssECI	CCNNGG	1 cut(s)	210
BssMI	GATC	6 cut(s)	154, 341, 499, 503, 702, 802
BssSI	CACGAG	2 cut(s)	345, 861
BssT1I	CCWWGG	1 cut(s)	210
Bst2BI	CACGAG	2 cut(s)	345, 861
Bst4CI	ACNGT	5 cut(s)	189, 788, 824, 997, 1105
BstC8I	GCNNGC	6 cut(s)	7, 35, 179, 360, 578, 910
BstDEI	CTNAG	2 cut(s)	450, 902
BstF5I	GGATG	3 cut(s)	303, 578, 754
BstFNI	CGCG	1 cut(s)	295
BstKTI	GATC	6 cut(s)	157, 344, 502, 506, 705, 805
BstMAI	GTCTC	3 cut(s)	178, 579, 659
BstMBI	GATC	6 cut(s)	154, 341, 499, 503, 702, 802
BstMCI	CGRYCG	1 cut(s)	506
BstMWI	GCNNNNNNNGC	1 cut(s)	30
BstNSI	RCATGY	1 cut(s)	815
BstSCI	CCNGG	1 cut(s)	675
BstSFI	CTRYAG	1 cut(s)	114
BstSLI	GKGCMC	1 cut(s)	364
BstUI	CGCG	1 cut(s)	295
BstV1I	GCAGC	3 cut(s)	97, 100, 941
Bsu15I	ATCGAT	1 cut(s)	502
BsuRI	GGCC	2 cut(s)	618, 739
BsuTUI	ATCGAT	1 cut(s)	502
BtsCI	GGATG	3 cut(s)	303, 578, 754
BtsI	GCAGTG	1 cut(s)	112
BtsIMutI	CAGTG	4 cut(s)	112, 343, 793, 987
Cac8I	GCNNGC	6 cut(s)	7, 35, 179, 360, 578, 910
ClaI	ATCGAT	1 cut(s)	502
CseI	GACGC	4 cut(s)	61, 67, 158, 301
Csp6I	GTAC	5 cut(s)	240, 332, 876, 1051, 1106
CviAII	CATG	6 cut(s)	89, 143, 149, 433, 614, 812
CviJI	RGCY	9 cut(s)	177, 318, 403, 562, 618, 628, 649, 739, 932
CviKI_1	RGCY	9 cut(s)	177, 318, 403, 562, 618, 628, 649, 739, 932
CviQI	GTAC	5 cut(s)	240, 332, 876, 1051, 1106
DdeI	CTNAG	2 cut(s)	450, 902
DpnI	GATC	6 cut(s)	156, 343, 501, 505, 704, 804
DpnII	GATC	6 cut(s)	154, 341, 499, 503, 702, 802
DrdI	GACNNNNNNGTC	1 cut(s)	298
DseDI	GACNNNNNNGTC	1 cut(s)	298
EaeI	YGGCCR	1 cut(s)	737
Eco130I	CCWWGG	1 cut(s)	210
Eco31I	GGTCTC	1 cut(s)	659
Eco88I	CYCGRG	2 cut(s)	607, 743
EcoT14I	CCWWGG	1 cut(s)	210
ErhI	CCWWGG	1 cut(s)	210
Esp3I	CGTCTC	1 cut(s)	178
FaeI	CATG	6 cut(s)	92, 146, 152, 436, 617, 815
FaqI	GGGAC	3 cut(s)	292, 298, 304
FatI	CATG	6 cut(s)	88, 142, 148, 432, 613, 811
FauI	CCCGC	2 cut(s)	365, 573
FauNDI	CATATG	1 cut(s)	1021
Fnu4HI	GCNGC	3 cut(s)	111, 114, 930
FokI	GGATG	3 cut(s)	310, 585, 761
Fsp4HI	GCNGC	3 cut(s)	111, 114, 930
FspBI	CTAG	6 cut(s)	27, 135, 237, 509, 515, 867
GluI	GCNGC	3 cut(s)	111, 114, 930
GsuI	CTGGAG	2 cut(s)	298, 827
HaeIII	GGCC	2 cut(s)	618, 739
HapII	CCGG	1 cut(s)	677
HgaI	GACGC	4 cut(s)	61, 67, 158, 301
Hin1II	CATG	6 cut(s)	92, 146, 152, 436, 617, 815
HinfI	GANTC	6 cut(s)	100, 215, 523, 587, 796, 1092
HpaII	CCGG	1 cut(s)	677
HphI	GGTGA	2 cut(s)	388, 1057
Hpy166II	GTNNAC	2 cut(s)	362, 827
Hpy188I	TCNGA	4 cut(s)	159, 322, 493, 1150
Hpy188III	TCNNGA	6 cut(s)	97, 345, 800, 806, 1089, 1096
Hpy8I	GTNNAC	2 cut(s)	362, 827
Hpy99I	CGWCG	2 cut(s)	665, 1040
HpyAV	CCTTC	1 cut(s)	466
HpyCH4III	ACNGT	5 cut(s)	189, 788, 824, 997, 1105
HpyCH4IV	ACGT	2 cut(s)	163, 1154
HpyCH4V	TGCA	5 cut(s)	33, 116, 362, 477, 971
HpyF10VI	GCNNNNNNNGC	1 cut(s)	30
HpyF3I	CTNAG	2 cut(s)	450, 902
HpySE526I	ACGT	2 cut(s)	163, 1154
Hsp92II	CATG	6 cut(s)	92, 146, 152, 436, 617, 815
Kzo9I	GATC	6 cut(s)	154, 341, 499, 503, 702, 802
LmnI	GCTCC	2 cut(s)	325, 808
Lsp1109I	GCAGC	3 cut(s)	97, 100, 941
LweI	GCATC	3 cut(s)	65, 563, 766
MaeI	CTAG	6 cut(s)	27, 135, 237, 509, 515, 867
MaeII	ACGT	2 cut(s)	163, 1154
MaeIII	GTNAC	3 cut(s)	376, 754, 782
MalI	GATC	6 cut(s)	156, 343, 501, 505, 704, 804
MboI	GATC	6 cut(s)	154, 341, 499, 503, 702, 802
MboII	GAAGA	5 cut(s)	225, 506, 926, 1137, 1183
MhlI	GDGCHC	1 cut(s)	364
MlsI	TGGCCA	1 cut(s)	739
MluCI	AATT	4 cut(s)	229, 547, 1165, 1175
MluNI	TGGCCA	1 cut(s)	739
MlyI	GAGTC	2 cut(s)	94, 581
MnlI	CCTC	8 cut(s)	316, 319, 322, 562, 688, 739, 864, 1092
Mox20I	TGGCCA	1 cut(s)	739
MscI	TGGCCA	1 cut(s)	739
MseI	TTAA	4 cut(s)	720, 1056, 1065, 1164
MslI	CAYNNNNRTG	2 cut(s)	147, 816
Msp20I	TGGCCA	1 cut(s)	739
MspA1I	CMGCKG	2 cut(s)	580, 932
MspI	CCGG	1 cut(s)	677
MspR9I	CCNGG	1 cut(s)	677
Mva1269I	GAATGC	1 cut(s)	838
MvnI	CGCG	1 cut(s)	295
MwoI	GCNNNNNNNGC	1 cut(s)	30
NciI	CCSGG	1 cut(s)	677
NdeI	CATATG	1 cut(s)	1021
NdeII	GATC	6 cut(s)	154, 341, 499, 503, 702, 802
NlaIII	CATG	6 cut(s)	92, 146, 152, 436, 617, 815
NlaIV	GGNNCC	1 cut(s)	1131
NmuCI	GTSAC	3 cut(s)	376, 754, 782
NspI	RCATGY	1 cut(s)	815
PaeR7I	CTCGAG	1 cut(s)	743
PcsI	WCGNNNNNNNCGW	1 cut(s)	299
PctI	GAATGC	1 cut(s)	838
PfeI	GAWTC	4 cut(s)	215, 523, 796, 1092
PflMI	CCANNNNNTGG	1 cut(s)	735
PkrI	GCNGC	3 cut(s)	112, 115, 931
Ple19I	CGATCG	1 cut(s)	506
PleI	GAGTC	2 cut(s)	94, 581
PpsI	GAGTC	2 cut(s)	94, 581
PshBI	ATTAAT	1 cut(s)	720
PsiI	TTATAA	1 cut(s)	417
Psp1406I	AACGTT	1 cut(s)	1154
PspN4I	GGNNCC	1 cut(s)	1131
PspXI	VCTCGAGB	1 cut(s)	743
PsrI	GAACNNNNNNTAC	2 cut(s)	232, 264
PstI	CTGCAG	1 cut(s)	118
PvuI	CGATCG	1 cut(s)	506
PvuII	CAGCTG	1 cut(s)	932
RsaI	GTAC	5 cut(s)	241, 333, 877, 1052, 1107
RsaNI	GTAC	5 cut(s)	240, 332, 876, 1051, 1106
RseI	CAYNNNNRTG	2 cut(s)	147, 816
SaqAI	TTAA	4 cut(s)	720, 1056, 1065, 1164
SatI	GCNGC	3 cut(s)	111, 114, 930
Sau3AI	GATC	6 cut(s)	154, 341, 499, 503, 702, 802
ScaI	AGTACT	1 cut(s)	241
SchI	GAGTC	2 cut(s)	94, 581
ScrFI	CCNGG	1 cut(s)	677
SduI	GDGCHC	1 cut(s)	364
SfaNI	GCATC	3 cut(s)	65, 563, 766
SfcI	CTRYAG	1 cut(s)	114
Sfr274I	CTCGAG	1 cut(s)	743
SlaI	CTCGAG	1 cut(s)	743
SmiMI	CAYNNNNRTG	2 cut(s)	147, 816
SmlI	CTYRAG	3 cut(s)	743, 1087, 1096
SmoI	CTYRAG	3 cut(s)	743, 1087, 1096
SpeI	ACTAGT	1 cut(s)	134
Sse9I	AATT	4 cut(s)	229, 547, 1165, 1175
SsiI	CCGC	5 cut(s)	84, 181, 295, 372, 580
SspMI	CTAG	6 cut(s)	27, 135, 237, 509, 515, 867
StyD4I	CCNGG	1 cut(s)	675
StyI	CCWWGG	1 cut(s)	210
TaaI	ACNGT	5 cut(s)	189, 788, 824, 997, 1105
TaiI	ACGT	2 cut(s)	166, 1157
TaqI	TCGA	5 cut(s)	502, 660, 744, 1035, 1111
TaqII	GACCGA	1 cut(s)	1025
TasI	AATT	4 cut(s)	229, 547, 1165, 1175
TatI	WGTACW	4 cut(s)	239, 875, 1050, 1105
TfiI	GAWTC	4 cut(s)	215, 523, 796, 1092
Tru1I	TTAA	4 cut(s)	720, 1056, 1065, 1164
Tru9I	TTAA	4 cut(s)	720, 1056, 1065, 1164
TscAI	CASTG	4 cut(s)	112, 343, 793, 994
TseFI	GTSAC	3 cut(s)	376, 754, 782
TseI	GCWGC	3 cut(s)	110, 113, 929
Tsp45I	GTSAC	3 cut(s)	376, 754, 782
TspDTI	ATGAA	4 cut(s)	131, 704, 738, 977
TspRI	CASTG	4 cut(s)	112, 343, 793, 994
Van91I	CCANNNNNTGG	1 cut(s)	735
VneI	GTGCAC	1 cut(s)	360
VspI	ATTAAT	1 cut(s)	720
XapI	RAATTY	2 cut(s)	547, 1175
XceI	RCATGY	1 cut(s)	815
XhoI	CTCGAG	1 cut(s)	743
XspI	CTAG	6 cut(s)	27, 135, 237, 509, 515, 867
ZrmI	AGTACT	1 cut(s)	241

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.