RchiOBHm_Chr6g0271791

Encoded by

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0006934
Physical Location & Seq
Forward (+)
31710137 .. 31711812
1676 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ24379

Sequence Viewer

Length: 1149 bp
ATGACCACCAATTGTAGTAATTGCAAGACGAGGCTTCCTCATCTAACCTCTCATCCAACCTCCCCAATTCCCCGTGTTACTCAATATTATCGCTGCTTCTGTGGTTATGTTAATCTGATTGAGACGACCAAGAAAGCTGATCTTGCCCGGCACCACCACGAAGGTCAGCAGCAGCAGGATAGCCATCGGGGACGAACTTCCAGCTGGATTAATTGGCTTATAAAGGGATCATCACCATCATCGTCGTCCAAGAACTGTAAATCCCCATCACCGTCACCGTCACCGTCATCGTCATCAACCAGCTTAATAAAAAGCTGTGGCAGAAAGCGCGCACTTCTTTGCGGAGTGACATACCAGGAGCGCAAGTACAAACTCAAAGGCACTTACAATGACGTCAATAACATGAAACAGTTGTTGATCAACACCTTTTGTTTTCCACCCGACTGCATTCGCATACTATCAGAAGAAGGGCAACCGAAAGAGCTGACTCCCACAAAGAAGAACATAGAGAAATCCCTGAAATGGCTTGTGGAGGGGTGCCAGGCAGGAGATTCGTTGGTGTTCTACTTCTCAGGACACGGACTCCGACAGCCCGATTTCAGAGACGACGACGTTGACGGGTTCGACGAGACTATATGCCCTCTTGATTTCATGGAAGAGGGCATGATCCTTGACAATGATATCAATTCAACCATCGTTCACCCACTCAAGGAGGGCGTCACACTGCATGCTATCGTTGATGCTTGTCATAGTGGAACAATTCTTGATCTACTCTACGTCTACGACCGTAAAGGGAACAAGTGGAAGGATAATAGTCCTCCTTCTGGTGCTAGGAAAAGTACAAGTGGAGGGTTGGCAATTTGCATCAGTGCCTGCGAAGACGATAAAATGGCAGCAGATACAACTGCTTTTGATCGAAATGTAATGAATGGTGCCATGACATACATTCTTATTGAAATTATTAAGAACCACTCTGGTAAAGGCATTACGTATGGGGAACTGCTCGACTTGATGTGTGATCAAATTCAAAGGATTAATGGGGATAGATGCCTCAACTCCAGAATCTTGAGAAAAGTTTTTCGACATAAAATCATTCAGGTACGGTCAGTTTCAGCATTTTTTTTTTGTTTAATTAATGTTTCGTTTTGA

Protein Analysis

382

Amino Acids

42.85

Weight (kDa)

8.66

Isoelectric Point (pI)

46.3

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Peptidase_C14 PF00656 108 - 343 3.9e-30 Caspase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 221
AatII GACGTC 1 cut(s) 396
AccB1I GGYRCC 3 cut(s) 150, 537, 932
AccI GTMKAC 1 cut(s) 780
AccII CGCG 1 cut(s) 330
AciI CCGC 1 cut(s) 342
AclWI GGATC 2 cut(s) 235, 661
AcsI RAATTY 1 cut(s) 1023
AcyI GRCGYC 2 cut(s) 393, 717
AfaI GTAC 3 cut(s) 368, 841, 1101
AfiI CCNNNNNNNGG 3 cut(s) 522, 709, 824
AgsI TTSAA 3 cut(s) 690, 956, 1028
AjnI CCWGG 2 cut(s) 354, 540
AloI GAACNNNNNNTCC 2 cut(s) 245, 277
AluBI AGCT 5 cut(s) 137, 204, 303, 315, 484
AluI AGCT 5 cut(s) 137, 204, 303, 315, 484
Alw26I GTCTC 3 cut(s) 116, 597, 623
AlwI GGATC 2 cut(s) 235, 661
AlwNI CAGNNNCTG 1 cut(s) 873
ApeKI GCWGC 4 cut(s) 93, 169, 172, 893
ApoI RAATTY 1 cut(s) 1023
AseI ATTAAT 3 cut(s) 210, 1035, 1134
AspLEI GCGC 3 cut(s) 330, 332, 363
AsuC2I CCSGG 1 cut(s) 148
AsuHPI GGTGA 5 cut(s) 225, 261, 267, 273, 692
BanI GGYRCC 3 cut(s) 150, 537, 932
BbsI GAAGAC 1 cut(s) 885
BbvI GCAGC 4 cut(s) 80, 181, 184, 905
BccI CCATC 4 cut(s) 192, 244, 274, 701
BcgI CGANNNNNNTGC 2 cut(s) 534, 568
BciT130I CCWGG 2 cut(s) 356, 542
BclI TGATCA 2 cut(s) 417, 1018
BcnI CCSGG 1 cut(s) 148
BcoDI GTCTC 3 cut(s) 116, 597, 623
BfaI CTAG 1 cut(s) 831
BisI GCNGC 4 cut(s) 94, 170, 173, 894
BlsI GCNGC 4 cut(s) 95, 171, 174, 895
Bme1390I CCNGG 3 cut(s) 148, 356, 542
BmiI GGNNCC 3 cut(s) 152, 539, 934
BmrFI CCNGG 3 cut(s) 148, 356, 542
BmsI GCATC 3 cut(s) 730, 873, 1037
BpiI GAAGAC 1 cut(s) 885
BplI GAGNNNNNCTC 2 cut(s) 22, 54
BpmI CTGGAG 1 cut(s) 1042
BpuEI CTTGAG 2 cut(s) 692, 1087
BpuMI CCSGG 1 cut(s) 148
BsaAI YACGTR 1 cut(s) 990
BsaBI GATNNNNATC 1 cut(s) 183
BsaHI GRCGYC 2 cut(s) 393, 717
BsaXI ACNNNNNCTCC 4 cut(s) 350, 380, 567, 597
Bsc4I CCNNNNNNNGG 3 cut(s) 522, 709, 824
Bse8I GATNNNNATC 1 cut(s) 183
BseBI CCWGG 2 cut(s) 356, 542
BseGI GGATG 1 cut(s) 52
BseJI GATNNNNATC 1 cut(s) 183
BseLI CCNNNNNNNGG 3 cut(s) 522, 709, 824
BseMII CTCAG 1 cut(s) 585
BsePI GCGCGC 1 cut(s) 328
BseXI GCAGC 4 cut(s) 80, 181, 184, 905
Bsh1236I CGCG 1 cut(s) 330
Bsh1285I CGRYCG 1 cut(s) 787
BshNI GGYRCC 3 cut(s) 150, 537, 932
BsiEI CGRYCG 1 cut(s) 787
BsiSI CCGG 1 cut(s) 148
BslFI GGGAC 1 cut(s) 204
BslI CCNNNNNNNGG 3 cut(s) 522, 709, 824
BsmAI GTCTC 3 cut(s) 116, 597, 623
BsmBI CGTCTC 2 cut(s) 116, 597
BsmFI GGGAC 1 cut(s) 204
BsmI GAATGC 1 cut(s) 447
Bsp143I GATC 7 cut(s) 139, 227, 417, 666, 766, 913, 1018
BspACI CCGC 1 cut(s) 342
BspCNI CTCAG 1 cut(s) 584
BspFNI CGCG 1 cut(s) 330
BspLI GGNNCC 3 cut(s) 152, 539, 934
BspPI GGATC 2 cut(s) 235, 661
BspT107I GGYRCC 3 cut(s) 150, 537, 932
BssHII GCGCGC 1 cut(s) 328
BssMI GATC 7 cut(s) 139, 227, 417, 666, 766, 913, 1018
BssNI GRCGYC 2 cut(s) 393, 717
Bst2UI CCWGG 2 cut(s) 356, 542
Bst4CI ACNGT 7 cut(s) 257, 273, 279, 285, 411, 788, 1104
Bst6I CTCTTC 1 cut(s) 651
BstACI GRCGYC 2 cut(s) 393, 717
BstBAI YACGTR 1 cut(s) 990
BstC8I GCNNGC 3 cut(s) 330, 729, 874
BstDEI CTNAG 1 cut(s) 571
BstF5I GGATG 1 cut(s) 52
BstFNI CGCG 1 cut(s) 330
BstHHI GCGC 3 cut(s) 330, 332, 363
BstKTI GATC 7 cut(s) 142, 230, 420, 669, 769, 916, 1021
BstMAI GTCTC 3 cut(s) 116, 597, 623
BstMBI GATC 7 cut(s) 139, 227, 417, 666, 766, 913, 1018
BstMCI CGRYCG 1 cut(s) 787
BstMWI GCNNNNNNNGC 2 cut(s) 143, 327
BstNI CCWGG 2 cut(s) 356, 542
BstNSI RCATGY 1 cut(s) 731
BstSCI CCNGG 3 cut(s) 146, 354, 540
BstSNI TACGTA 1 cut(s) 990
BstUI CGCG 1 cut(s) 330
BstV1I GCAGC 4 cut(s) 80, 181, 184, 905
BstV2I GAAGAC 1 cut(s) 885
BtsCI GGATG 1 cut(s) 52
BtsI GCAGTG 1 cut(s) 722
BtsIMutI CAGTG 2 cut(s) 722, 874
Cac8I GCNNGC 3 cut(s) 330, 729, 874
CaiI CAGNNNCTG 1 cut(s) 873
CfoI GCGC 3 cut(s) 330, 332, 363
CseI GACGC 1 cut(s) 706
Csp6I GTAC 3 cut(s) 367, 840, 1100
CviAII CATG 5 cut(s) 403, 652, 664, 728, 937
CviQI GTAC 3 cut(s) 367, 840, 1100
DdeI CTNAG 1 cut(s) 571
DpnI GATC 7 cut(s) 141, 229, 419, 668, 768, 915, 1020
DpnII GATC 7 cut(s) 139, 227, 417, 666, 766, 913, 1018
Eam1104I CTCTTC 1 cut(s) 651
EarI CTCTTC 1 cut(s) 651
Eco105I TACGTA 1 cut(s) 990
Eco32I GATATC 1 cut(s) 682
EcoRII CCWGG 2 cut(s) 354, 540
EcoRV GATATC 1 cut(s) 682
Esp3I CGTCTC 2 cut(s) 116, 597
FaeI CATG 5 cut(s) 406, 655, 667, 731, 940
FalI AAGNNNNNCTT 2 cut(s) 126, 158
FaqI GGGAC 1 cut(s) 204
FatI CATG 5 cut(s) 402, 651, 663, 727, 936
FbaI TGATCA 2 cut(s) 417, 1018
FblI GTMKAC 1 cut(s) 780
Fnu4HI GCNGC 4 cut(s) 94, 170, 173, 894
FokI GGATG 1 cut(s) 39
Fsp4HI GCNGC 4 cut(s) 94, 170, 173, 894
FspBI CTAG 1 cut(s) 831
GlaI GCGC 3 cut(s) 329, 331, 362
GluI GCNGC 4 cut(s) 94, 170, 173, 894
GsuI CTGGAG 1 cut(s) 1042
HapII CCGG 1 cut(s) 148
HgaI GACGC 1 cut(s) 706
HhaI GCGC 3 cut(s) 330, 332, 363
Hin1I GRCGYC 2 cut(s) 393, 717
Hin1II CATG 5 cut(s) 406, 655, 667, 731, 940
Hin6I GCGC 3 cut(s) 328, 330, 361
HinP1I GCGC 3 cut(s) 328, 330, 361
HincII GTYRAC 1 cut(s) 616
HindII GTYRAC 1 cut(s) 616
HinfI GANTC 4 cut(s) 487, 551, 582, 1062
HpaII CCGG 1 cut(s) 148
HphI GGTGA 5 cut(s) 225, 261, 267, 273, 692
Hpy166II GTNNAC 3 cut(s) 616, 700, 781
Hpy188I TCNGA 4 cut(s) 117, 463, 587, 602
Hpy188III TCNNGA 5 cut(s) 573, 644, 764, 1059, 1066
Hpy8I GTNNAC 3 cut(s) 616, 700, 781
Hpy99I CGWCG 4 cut(s) 247, 611, 614, 629
HpyAV CCTTC 4 cut(s) 155, 461, 799, 831
HpyCH4III ACNGT 7 cut(s) 257, 273, 279, 285, 411, 788, 1104
HpyCH4IV ACGT 4 cut(s) 393, 612, 777, 989
HpyCH4V TGCA 4 cut(s) 24, 447, 727, 864
HpyF10VI GCNNNNNNNGC 2 cut(s) 143, 327
HpyF3I CTNAG 1 cut(s) 571
HpySE526I ACGT 4 cut(s) 393, 612, 777, 989
Hsp92I GRCGYC 2 cut(s) 393, 717
Hsp92II CATG 5 cut(s) 406, 655, 667, 731, 940
HspAI GCGC 3 cut(s) 328, 330, 361
Ksp22I TGATCA 2 cut(s) 417, 1018
Kzo9I GATC 7 cut(s) 139, 227, 417, 666, 766, 913, 1018
LmnI GCTCC 1 cut(s) 358
Lsp1109I GCAGC 4 cut(s) 80, 181, 184, 905
LweI GCATC 3 cut(s) 730, 873, 1037
MaeI CTAG 1 cut(s) 831
MaeII ACGT 4 cut(s) 393, 612, 777, 989
MaeIII GTNAC 5 cut(s) 76, 273, 279, 346, 718
MalI GATC 7 cut(s) 141, 229, 419, 668, 768, 915, 1020
MboI GATC 7 cut(s) 139, 227, 417, 666, 766, 913, 1018
MboII GAAGA 4 cut(s) 476, 511, 668, 890
MfeI CAATTG 1 cut(s) 10
MlyI GAGTC 2 cut(s) 481, 576
MmeI TCCRAC 2 cut(s) 80, 610
MseI TTAA 7 cut(s) 111, 210, 305, 963, 1035, 1130, 1134
MspA1I CMGCKG 1 cut(s) 204
MspI CCGG 1 cut(s) 148
MspR9I CCNGG 3 cut(s) 148, 356, 542
MunI CAATTG 1 cut(s) 10
Mva1269I GAATGC 1 cut(s) 447
MvaI CCWGG 2 cut(s) 356, 542
MvnI CGCG 1 cut(s) 330
MwoI GCNNNNNNNGC 2 cut(s) 143, 327
NciI CCSGG 1 cut(s) 148
NdeII GATC 7 cut(s) 139, 227, 417, 666, 766, 913, 1018
NlaIII CATG 5 cut(s) 406, 655, 667, 731, 940
NlaIV GGNNCC 3 cut(s) 152, 539, 934
NmuCI GTSAC 4 cut(s) 273, 279, 346, 718
NspI RCATGY 1 cut(s) 731
PacI TTAATTAA 1 cut(s) 1134
PaeI GCATGC 1 cut(s) 731
PauI GCGCGC 1 cut(s) 328
PcsI WCGNNNNNNNCGW 1 cut(s) 624
PctI GAATGC 1 cut(s) 447
PfeI GAWTC 2 cut(s) 551, 1062
PkrI GCNGC 4 cut(s) 95, 171, 174, 895
PleI GAGTC 2 cut(s) 481, 576
PpsI GAGTC 2 cut(s) 481, 576
Ppu21I YACGTR 1 cut(s) 990
PshBI ATTAAT 3 cut(s) 210, 1035, 1134
PsiI TTATAA 1 cut(s) 221
Psp6I CCWGG 2 cut(s) 354, 540
PspGI CCWGG 2 cut(s) 354, 540
PspN4I GGNNCC 3 cut(s) 152, 539, 934
PstNI CAGNNNCTG 1 cut(s) 873
PteI GCGCGC 1 cut(s) 328
PvuII CAGCTG 1 cut(s) 204
RsaI GTAC 3 cut(s) 368, 841, 1101
RsaNI GTAC 3 cut(s) 367, 840, 1100
SaqAI TTAA 7 cut(s) 111, 210, 305, 963, 1035, 1130, 1134
SatI GCNGC 4 cut(s) 94, 170, 173, 894
Sau3AI GATC 7 cut(s) 139, 227, 417, 666, 766, 913, 1018
SchI GAGTC 2 cut(s) 481, 576
ScrFI CCNGG 3 cut(s) 148, 356, 542
SfaNI GCATC 3 cut(s) 730, 873, 1037
SmlI CTYRAG 2 cut(s) 707, 1066
SmoI CTYRAG 2 cut(s) 707, 1066
SnaBI TACGTA 1 cut(s) 990
SphI GCATGC 1 cut(s) 731
SsiI CCGC 1 cut(s) 342
SspI AATATT 1 cut(s) 86
SspMI CTAG 1 cut(s) 831
StyD4I CCNGG 3 cut(s) 146, 354, 540
TaaI ACNGT 7 cut(s) 257, 273, 279, 285, 411, 788, 1104
TaiI ACGT 4 cut(s) 396, 615, 780, 992
TaqI TCGA 4 cut(s) 624, 916, 1005, 1081
TatI WGTACW 2 cut(s) 366, 839
TfiI GAWTC 2 cut(s) 551, 1062
Tru1I TTAA 7 cut(s) 111, 210, 305, 963, 1035, 1130, 1134
Tru9I TTAA 7 cut(s) 111, 210, 305, 963, 1035, 1130, 1134
TscAI CASTG 2 cut(s) 729, 874
TseFI GTSAC 4 cut(s) 273, 279, 346, 718
TseI GCWGC 4 cut(s) 93, 169, 172, 893
Tsp45I GTSAC 4 cut(s) 273, 279, 346, 718
TspDTI ATGAA 3 cut(s) 419, 640, 941
TspGWI ACGGA 1 cut(s) 594
TspRI CASTG 2 cut(s) 729, 874
VspI ATTAAT 3 cut(s) 210, 1035, 1134
XapI RAATTY 1 cut(s) 1023
XceI RCATGY 1 cut(s) 731
XmiI GTMKAC 1 cut(s) 780
XspI CTAG 1 cut(s) 831
ZraI GACGTC 1 cut(s) 394
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.