Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr6

Orthogroup ID

OG0006934

Physical Location & Seq

Genomic Coordinates Forward (+)

29894738 .. 29914616

Gene Structure 19879 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw6G015550.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1074 bp

ATGACCACCAATTGTAGCAATTGCAAGACGAGGCTTCCTCATCTAACCTCTCATCACCCCTCACCAATACCCCGTGTTACTGAATATCGCTGCTTCTGTGGTTATGTTAATCGGATTGAGACGACCAAGCCAGCTGATCTTGCCCGGCACCACCACGAAGAGGGATCATCACCATCATCGTCGTCCAAGAACTGTAAACCCCCATCACGGTCACCGTCATCGTCATCGTCATCAACCAGCTTAATAAAAAGCTGTGGCAGAAAGCGCGCACTTCTTTGCGGAGTGACATACCAGGAGCGCAAGTACAAACTCAAAGGCACTTACAATGACGTCAATAACATGAAACACTTGTTGATCAACACCTTTTGTTTTCCACCCGACTGCATTCGCATACTATCAGAAGAAGAAGGGCAACCGAAAGAGCTGACTCCCACAAAGAAGAACATAGAGAAATCCCTGAAATGGCTTGTGGAGGGGTGCCAGGCAGGAGATTCGTTGGTGTTCTACTTCTCAGGACACGGACTCCGACAGCCCGATTTCAAAGACGACGACTTTGACGGGTTCGACGAGACTATATGCCCTCTTGATTTCATGGAAGAGGGCATGATCCTTGACAATGAAATCAATTCAACCATCGTTCACCCACTCAAGGAGGGCGTCACACTGCATGCTATCGTTGATGCTTGTCATAGCGGAACAATTCTTGATCTACTCTACGTCTACGACCATAAAGGGAACAAGTGGAAGGATAATAGTCCTCCTTCTGGTGCTAGGAAAAGTACAAGTGGAGGGTTGGCAATTTGCATCAGTGCCTGCGAAGACGATAAAATGGCAGCAGATACAACTGCTTTTGATCGAAATGTAATGAATGGTGCCATGACATACATTCTTATTGAAATTATTAAGAACCACTCTGGTAAAGGCATTACGTATGGGGAACTGCTCGACTTGATGTGTGATCAAATTCAAAGGATTAATAGGGATAGATGCCTCAACTCCAGAATCTTGAGAAAACAACCTTTATTGTCATCGTCCGAGGAATTCGATGTATACAAGAAGAAATTTCTCTTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004175 GO:0004197 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008234 GO:0010941 GO:0010942 GO:0016787 GO:0019538 GO:0043067 GO:0043068 GO:0043170 GO:0044238 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0065007 GO:0070011 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_C14

Protein Analysis

357

Amino Acids

40.08

Weight (kDa)

7.51

Isoelectric Point (pI)

50.87

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_C14	PF00656	87 - 326	5.8e-30	Caspase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006934)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g28030 FvH4_5g28030
malus_domestica	MD05G1043500.v1.1 MD05G1043900.v1.1 MD10G1050900.v1.1
prunus_persica	Prupe.8G062700_v2.0.a1 Prupe.8G062700_v2.0.a1 Prupe.8G062700_v2.0.a1 Prupe.8G062700_v2.0.a1 Prupe.8G062700_v2.0.a1
pyrus_communis	pycom05g03590 pycom05g03600 pycom10g03580
rosa_chinensis	RchiOBHm_Chr6g0271771 RchiOBHm_Chr6g0271791
rosa_laevigata	RLG00000013716 RLG00000013731
rosa_multiflora	Rmu_sc0002396.1_g000009
rosa_roxburghii	Rroxscaffold_7G00196660
rosa_rugosa	Rorug06G0062400
rosa_samantha	Rh6BG186100 Rh6CG180800 Rh6CG181700
rosa_wichuraiana	Rw0G011900 Rw6G015540 Rw6G015550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	333
AccB1I	GGYRCC	3 cut(s)	147, 477, 872
AccI	GTMKAC	2 cut(s)	720, 1050
AccII	CGCG	1 cut(s)	267
AciI	CCGC	2 cut(s)	279, 693
AclWI	GGATC	2 cut(s)	172, 601
AcsI	RAATTY	3 cut(s)	963, 1040, 1061
AcyI	GRCGYC	2 cut(s)	330, 657
AfaI	GTAC	2 cut(s)	305, 781
AfiI	CCNNNNNNNGG	5 cut(s)	160, 207, 462, 649, 764
AgsI	TTSAA	4 cut(s)	541, 630, 896, 968
AjnI	CCWGG	2 cut(s)	291, 480
AluBI	AGCT	4 cut(s)	134, 240, 252, 424
AluI	AGCT	4 cut(s)	134, 240, 252, 424
Alw26I	GTCTC	2 cut(s)	113, 563
AlwI	GGATC	2 cut(s)	172, 601
AlwNI	CAGNNNCTG	1 cut(s)	813
ApeKI	GCWGC	2 cut(s)	90, 833
ApoI	RAATTY	3 cut(s)	963, 1040, 1061
ArsI	GACNNNNNNTTYG	2 cut(s)	536, 568
AseI	ATTAAT	1 cut(s)	975
AspLEI	GCGC	3 cut(s)	267, 269, 300
AsuC2I	CCSGG	1 cut(s)	145
AsuHPI	GGTGA	5 cut(s)	47, 54, 162, 204, 632
BanI	GGYRCC	3 cut(s)	147, 477, 872
BbsI	GAAGAC	1 cut(s)	825
BbvI	GCAGC	2 cut(s)	77, 845
BccI	CCATC	3 cut(s)	181, 211, 641
BcgI	CGANNNNNNTGC	2 cut(s)	474, 508
BciT130I	CCWGG	2 cut(s)	293, 482
BclI	TGATCA	2 cut(s)	354, 958
BcnI	CCSGG	1 cut(s)	145
BcoDI	GTCTC	2 cut(s)	113, 563
BfaI	CTAG	1 cut(s)	771
BisI	GCNGC	2 cut(s)	91, 834
BlsI	GCNGC	2 cut(s)	92, 835
Bme1390I	CCNGG	3 cut(s)	145, 293, 482
BmiI	GGNNCC	3 cut(s)	149, 479, 874
BmrFI	CCNGG	3 cut(s)	145, 293, 482
BmsI	GCATC	3 cut(s)	670, 813, 977
BpiI	GAAGAC	1 cut(s)	825
BplI	GAGNNNNNCTC	2 cut(s)	22, 54
BpmI	CTGGAG	1 cut(s)	982
BpuEI	CTTGAG	2 cut(s)	632, 1027
BpuMI	CCSGG	1 cut(s)	145
BsaAI	YACGTR	1 cut(s)	930
BsaHI	GRCGYC	2 cut(s)	330, 657
BsaJI	CCNNGG	1 cut(s)	1035
BsaXI	ACNNNNNCTCC	4 cut(s)	287, 317, 507, 537
Bsc4I	CCNNNNNNNGG	5 cut(s)	160, 207, 462, 649, 764
BseBI	CCWGG	2 cut(s)	293, 482
BseDI	CCNNGG	1 cut(s)	1035
BseLI	CCNNNNNNNGG	5 cut(s)	160, 207, 462, 649, 764
BseMII	CTCAG	1 cut(s)	525
BsePI	GCGCGC	1 cut(s)	265
BseXI	GCAGC	2 cut(s)	77, 845
Bsh1236I	CGCG	1 cut(s)	267
BshNI	GGYRCC	3 cut(s)	147, 477, 872
BsiSI	CCGG	1 cut(s)	145
BslI	CCNNNNNNNGG	5 cut(s)	160, 207, 462, 649, 764
BsmAI	GTCTC	2 cut(s)	113, 563
BsmBI	CGTCTC	1 cut(s)	113
BsmI	GAATGC	1 cut(s)	384
Bsp143I	GATC	7 cut(s)	136, 164, 354, 606, 706, 853, 958
BspACI	CCGC	2 cut(s)	279, 693
BspCNI	CTCAG	1 cut(s)	524
BspFNI	CGCG	1 cut(s)	267
BspLI	GGNNCC	3 cut(s)	149, 479, 874
BspPI	GGATC	2 cut(s)	172, 601
BspT107I	GGYRCC	3 cut(s)	147, 477, 872
BssECI	CCNNGG	1 cut(s)	1035
BssHII	GCGCGC	1 cut(s)	265
BssMI	GATC	7 cut(s)	136, 164, 354, 606, 706, 853, 958
BssNAI	GTATAC	1 cut(s)	1051
BssNI	GRCGYC	2 cut(s)	330, 657
Bst1107I	GTATAC	1 cut(s)	1051
Bst2UI	CCWGG	2 cut(s)	293, 482
Bst4CI	ACNGT	3 cut(s)	194, 210, 216
Bst6I	CTCTTC	2 cut(s)	153, 591
BstACI	GRCGYC	2 cut(s)	330, 657
BstBAI	YACGTR	1 cut(s)	930
BstC8I	GCNNGC	4 cut(s)	132, 267, 669, 814
BstDEI	CTNAG	1 cut(s)	511
BstEII	GGTNACC	1 cut(s)	210
BstFNI	CGCG	1 cut(s)	267
BstHHI	GCGC	3 cut(s)	267, 269, 300
BstKTI	GATC	7 cut(s)	139, 167, 357, 609, 709, 856, 961
BstMAI	GTCTC	2 cut(s)	113, 563
BstMBI	GATC	7 cut(s)	136, 164, 354, 606, 706, 853, 958
BstMWI	GCNNNNNNNGC	2 cut(s)	140, 264
BstNI	CCWGG	2 cut(s)	293, 482
BstNSI	RCATGY	1 cut(s)	671
BstPI	GGTNACC	1 cut(s)	210
BstSCI	CCNGG	3 cut(s)	143, 291, 480
BstSNI	TACGTA	1 cut(s)	930
BstUI	CGCG	1 cut(s)	267
BstV1I	GCAGC	2 cut(s)	77, 845
BstV2I	GAAGAC	1 cut(s)	825
BstZ17I	GTATAC	1 cut(s)	1051
BtsI	GCAGTG	1 cut(s)	662
BtsIMutI	CAGTG	2 cut(s)	662, 814
Cac8I	GCNNGC	4 cut(s)	132, 267, 669, 814
CaiI	CAGNNNCTG	1 cut(s)	813
CfoI	GCGC	3 cut(s)	267, 269, 300
CseI	GACGC	1 cut(s)	646
Csp6I	GTAC	2 cut(s)	304, 780
CviAII	CATG	5 cut(s)	340, 592, 604, 668, 877
CviJI	RGCY	8 cut(s)	34, 130, 134, 240, 252, 424, 466, 532
CviKI_1	RGCY	8 cut(s)	34, 130, 134, 240, 252, 424, 466, 532
CviQI	GTAC	2 cut(s)	304, 780
DdeI	CTNAG	1 cut(s)	511
DpnI	GATC	7 cut(s)	138, 166, 356, 608, 708, 855, 960
DpnII	GATC	7 cut(s)	136, 164, 354, 606, 706, 853, 958
Eam1104I	CTCTTC	2 cut(s)	153, 591
EarI	CTCTTC	2 cut(s)	153, 591
Eco105I	TACGTA	1 cut(s)	930
Eco91I	GGTNACC	1 cut(s)	210
EcoO65I	GGTNACC	1 cut(s)	210
EcoRI	GAATTC	1 cut(s)	1040
EcoRII	CCWGG	2 cut(s)	291, 480
Esp3I	CGTCTC	1 cut(s)	113
FaeI	CATG	5 cut(s)	343, 595, 607, 671, 880
FatI	CATG	5 cut(s)	339, 591, 603, 667, 876
FbaI	TGATCA	2 cut(s)	354, 958
FblI	GTMKAC	2 cut(s)	720, 1050
Fnu4HI	GCNGC	2 cut(s)	91, 834
Fsp4HI	GCNGC	2 cut(s)	91, 834
FspBI	CTAG	1 cut(s)	771
GlaI	GCGC	3 cut(s)	266, 268, 299
GluI	GCNGC	2 cut(s)	91, 834
GsuI	CTGGAG	1 cut(s)	982
HapII	CCGG	1 cut(s)	145
HgaI	GACGC	1 cut(s)	646
HhaI	GCGC	3 cut(s)	267, 269, 300
Hin1I	GRCGYC	2 cut(s)	330, 657
Hin1II	CATG	5 cut(s)	343, 595, 607, 671, 880
Hin6I	GCGC	3 cut(s)	265, 267, 298
HinP1I	GCGC	3 cut(s)	265, 267, 298
HinfI	GANTC	4 cut(s)	427, 491, 522, 1002
HpaII	CCGG	1 cut(s)	145
HphI	GGTGA	5 cut(s)	47, 54, 162, 204, 632
Hpy166II	GTNNAC	4 cut(s)	197, 640, 721, 1051
Hpy188I	TCNGA	4 cut(s)	114, 400, 527, 1036
Hpy188III	TCNNGA	5 cut(s)	513, 584, 704, 999, 1006
Hpy8I	GTNNAC	4 cut(s)	197, 640, 721, 1051
Hpy99I	CGWCG	3 cut(s)	184, 551, 569
HpyAV	CCTTC	3 cut(s)	401, 739, 771
HpyCH4III	ACNGT	3 cut(s)	194, 210, 216
HpyCH4IV	ACGT	3 cut(s)	330, 717, 929
HpyCH4V	TGCA	4 cut(s)	24, 384, 667, 804
HpyF10VI	GCNNNNNNNGC	2 cut(s)	140, 264
HpyF3I	CTNAG	1 cut(s)	511
HpySE526I	ACGT	3 cut(s)	330, 717, 929
Hsp92I	GRCGYC	2 cut(s)	330, 657
Hsp92II	CATG	5 cut(s)	343, 595, 607, 671, 880
HspAI	GCGC	3 cut(s)	265, 267, 298
Ksp22I	TGATCA	2 cut(s)	354, 958
Kzo9I	GATC	7 cut(s)	136, 164, 354, 606, 706, 853, 958
LmnI	GCTCC	1 cut(s)	295
Lsp1109I	GCAGC	2 cut(s)	77, 845
LweI	GCATC	3 cut(s)	670, 813, 977
MaeI	CTAG	1 cut(s)	771
MaeII	ACGT	3 cut(s)	330, 717, 929
MaeIII	GTNAC	4 cut(s)	76, 210, 283, 658
MalI	GATC	7 cut(s)	138, 166, 356, 608, 708, 855, 960
MboI	GATC	7 cut(s)	136, 164, 354, 606, 706, 853, 958
MboII	GAAGA	7 cut(s)	170, 413, 416, 451, 608, 830, 1069
MfeI	CAATTG	2 cut(s)	10, 19
MluCI	AATT	9 cut(s)	10, 19, 625, 699, 798, 897, 963, 1040, 1061
MlyI	GAGTC	2 cut(s)	421, 516
MmeI	TCCRAC	1 cut(s)	550
MseI	TTAA	4 cut(s)	108, 242, 903, 975
MspA1I	CMGCKG	1 cut(s)	134
MspI	CCGG	1 cut(s)	145
MspR9I	CCNGG	3 cut(s)	145, 293, 482
MunI	CAATTG	2 cut(s)	10, 19
Mva1269I	GAATGC	1 cut(s)	384
MvaI	CCWGG	2 cut(s)	293, 482
MvnI	CGCG	1 cut(s)	267
MwoI	GCNNNNNNNGC	2 cut(s)	140, 264
NciI	CCSGG	1 cut(s)	145
NdeII	GATC	7 cut(s)	136, 164, 354, 606, 706, 853, 958
NlaIII	CATG	5 cut(s)	343, 595, 607, 671, 880
NlaIV	GGNNCC	3 cut(s)	149, 479, 874
NmuCI	GTSAC	3 cut(s)	210, 283, 658
NspI	RCATGY	1 cut(s)	671
PaeI	GCATGC	1 cut(s)	671
PauI	GCGCGC	1 cut(s)	265
PcsI	WCGNNNNNNNCGW	1 cut(s)	564
PctI	GAATGC	1 cut(s)	384
PfeI	GAWTC	2 cut(s)	491, 1002
PkrI	GCNGC	2 cut(s)	92, 835
PleI	GAGTC	2 cut(s)	421, 516
PpsI	GAGTC	2 cut(s)	421, 516
Ppu21I	YACGTR	1 cut(s)	930
PshBI	ATTAAT	1 cut(s)	975
Psp6I	CCWGG	2 cut(s)	291, 480
PspEI	GGTNACC	1 cut(s)	210
PspGI	CCWGG	2 cut(s)	291, 480
PspN4I	GGNNCC	3 cut(s)	149, 479, 874
PstNI	CAGNNNCTG	1 cut(s)	813
PteI	GCGCGC	1 cut(s)	265
PvuII	CAGCTG	1 cut(s)	134
RsaI	GTAC	2 cut(s)	305, 781
RsaNI	GTAC	2 cut(s)	304, 780
SaqAI	TTAA	4 cut(s)	108, 242, 903, 975
SatI	GCNGC	2 cut(s)	91, 834
Sau3AI	GATC	7 cut(s)	136, 164, 354, 606, 706, 853, 958
SchI	GAGTC	2 cut(s)	421, 516
ScrFI	CCNGG	3 cut(s)	145, 293, 482
SfaNI	GCATC	3 cut(s)	670, 813, 977
SmlI	CTYRAG	2 cut(s)	647, 1006
SmoI	CTYRAG	2 cut(s)	647, 1006
SnaBI	TACGTA	1 cut(s)	930
SphI	GCATGC	1 cut(s)	671
Sse9I	AATT	9 cut(s)	10, 19, 625, 699, 798, 897, 963, 1040, 1061
SsiI	CCGC	2 cut(s)	279, 693
SspMI	CTAG	1 cut(s)	771
StyD4I	CCNGG	3 cut(s)	143, 291, 480
TaaI	ACNGT	3 cut(s)	194, 210, 216
TaiI	ACGT	3 cut(s)	333, 720, 932
TaqI	TCGA	4 cut(s)	564, 856, 945, 1044
TasI	AATT	9 cut(s)	10, 19, 625, 699, 798, 897, 963, 1040, 1061
TatI	WGTACW	2 cut(s)	303, 779
TfiI	GAWTC	2 cut(s)	491, 1002
Tru1I	TTAA	4 cut(s)	108, 242, 903, 975
Tru9I	TTAA	4 cut(s)	108, 242, 903, 975
TscAI	CASTG	2 cut(s)	669, 814
TseFI	GTSAC	3 cut(s)	210, 283, 658
TseI	GCWGC	2 cut(s)	90, 833
Tsp45I	GTSAC	3 cut(s)	210, 283, 658
TspDTI	ATGAA	4 cut(s)	356, 580, 633, 881
TspGWI	ACGGA	1 cut(s)	534
TspRI	CASTG	2 cut(s)	669, 814
VspI	ATTAAT	1 cut(s)	975
XapI	RAATTY	3 cut(s)	963, 1040, 1061
XceI	RCATGY	1 cut(s)	671
XmiI	GTMKAC	2 cut(s)	720, 1050
XspI	CTAG	1 cut(s)	771
ZraI	GACGTC	1 cut(s)	331

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.