Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002396.1

Orthogroup ID

OG0006934

Physical Location & Seq

Genomic Coordinates Forward (+)

50099 .. 51891

Gene Structure 1793 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002396.1_g000009.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1158 bp

atgaccaccaattgtagcaattgcaagacgaggcttcctcatctaacctctcatccaacctcaccaataccccgtgttactcaatatcgctgcttctgtggttatgttaatctgattgagacgaccaagccagctgatcttgcccagcaccaccacgaaggtcagcagcagcagcatagccatcggagacgagcttccagctggattaattcgcatataaagggatcatcaccatcatcgtcgtccaagaactgtaaacccccatcaccgtcaccgtcatcgtcatcgtcatcaaccagcttaataaaaagctgtggcagaaagcgcgcacttctttgcggagtgacataccaggagcgcaagtacaaactcaaaggcacttacaatgatgtcaataacatgaaacacttgttgatcaacaccttttgttttccacccgactgcattcgcatactatcagaagaagaagggcaaccgaaagagctgactcccacaaagaagaacatagagaaatccctgaaatggcttgtggaggggtgccaggcaggagattcgttggtgttctacttctcaggacacggactacgacagcccgattttaaagacgacgaggttgacgggttcgacgagactatctgccctcttgatttcatggaagagggcatgatccttgacaatgatatcaattcaaccatcgttcgcccactcaaggagggcgtcacactacatgctatcgttgatgcttgtcatagtggaacaattcttgatctactctacgtctacgaccataaagggaacaagtggaaggataatagtcctccttctggtgctaggaaaagtacaagtggagggttggcaatttgcatcagtgcctgcgaagacgataaaatggcagcagatacaactgcttttgatcgaaatgtaatgaatggtgccatgacatacactcttattgaaattatgaagaactactctggtaaaggcattacgtatggggaactgctcgacttgatgtttgatcaaattcaaaggattaatggggatagatgcctcaattccagaatcttgagaaaagtttttcgacacaaaatcattcagcaacctttattgtcatcgtccgaagacttcgatgtatacaagaagaaatttctcttgtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004175 GO:0004197 GO:0006508 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008234 GO:0010941 GO:0010942 GO:0016787 GO:0019538 GO:0043067 GO:0043068 GO:0043170 GO:0044238 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0065007 GO:0070011 GO:0071704 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_C14

Protein Analysis

385

Amino Acids

43.26

Weight (kDa)

8.52

Isoelectric Point (pI)

49.34

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006934)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_5g28030 FvH4_5g28030
malus_domestica	MD05G1043500.v1.1 MD05G1043900.v1.1 MD10G1050900.v1.1
prunus_persica	Prupe.8G062700_v2.0.a1 Prupe.8G062700_v2.0.a1 Prupe.8G062700_v2.0.a1 Prupe.8G062700_v2.0.a1 Prupe.8G062700_v2.0.a1
pyrus_communis	pycom05g03590 pycom05g03600 pycom10g03580
rosa_chinensis	RchiOBHm_Chr6g0271771 RchiOBHm_Chr6g0271791
rosa_laevigata	RLG00000013716 RLG00000013731
rosa_multiflora	Rmu_sc0002396.1_g000009
rosa_roxburghii	Rroxscaffold_7G00196660
rosa_rugosa	Rorug06G0062400
rosa_samantha	Rh6BG186100 Rh6CG180800 Rh6CG181700
rosa_wichuraiana	Rw0G011900 Rw6G015540 Rw6G015550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	537, 932
AccI	GTMKAC	2 cut(s)	780, 1134
AccII	CGCG	1 cut(s)	327
AciI	CCGC	1 cut(s)	339
AclWI	GGATC	2 cut(s)	232, 661
AcsI	RAATTY	2 cut(s)	1023, 1145
AcyI	GRCGYC	1 cut(s)	717
AfaI	GTAC	2 cut(s)	365, 841
AfiI	CCNNNNNNNGG	3 cut(s)	522, 709, 824
AgsI	TTSAA	3 cut(s)	690, 956, 1028
AjnI	CCWGG	2 cut(s)	351, 540
AluBI	AGCT	6 cut(s)	134, 194, 201, 300, 312, 484
AluI	AGCT	6 cut(s)	134, 194, 201, 300, 312, 484
Alw26I	GTCTC	3 cut(s)	113, 181, 623
AlwI	GGATC	2 cut(s)	232, 661
AlwNI	CAGNNNCTG	1 cut(s)	873
ApeKI	GCWGC	5 cut(s)	90, 166, 169, 172, 893
ApoI	RAATTY	2 cut(s)	1023, 1145
ArsI	GACNNNNNNTTYG	2 cut(s)	998, 1030
AseI	ATTAAT	2 cut(s)	207, 1035
AspLEI	GCGC	3 cut(s)	327, 329, 360
AsuHPI	GGTGA	4 cut(s)	54, 222, 258, 264
BanI	GGYRCC	2 cut(s)	537, 932
BbsI	GAAGAC	2 cut(s)	885, 1128
BbvI	GCAGC	5 cut(s)	77, 178, 181, 184, 905
BccI	CCATC	4 cut(s)	189, 241, 271, 701
BcgI	CGANNNNNNTGC	4 cut(s)	164, 198, 534, 568
BciT130I	CCWGG	2 cut(s)	353, 542
BclI	TGATCA	2 cut(s)	414, 1018
BcoDI	GTCTC	3 cut(s)	113, 181, 623
BfaI	CTAG	1 cut(s)	831
BisI	GCNGC	5 cut(s)	91, 167, 170, 173, 894
BlsI	GCNGC	5 cut(s)	92, 168, 171, 174, 895
Bme1390I	CCNGG	2 cut(s)	353, 542
BmiI	GGNNCC	2 cut(s)	539, 934
BmrFI	CCNGG	2 cut(s)	353, 542
BmsI	GCATC	3 cut(s)	730, 873, 1037
BpiI	GAAGAC	2 cut(s)	885, 1128
BplI	GAGNNNNNCTC	2 cut(s)	22, 54
BpuEI	CTTGAG	2 cut(s)	692, 1087
BsaAI	YACGTR	1 cut(s)	990
BsaHI	GRCGYC	1 cut(s)	717
BsaXI	ACNNNNNCTCC	2 cut(s)	347, 377
Bsc4I	CCNNNNNNNGG	3 cut(s)	522, 709, 824
BseBI	CCWGG	2 cut(s)	353, 542
BseGI	GGATG	1 cut(s)	52
BseLI	CCNNNNNNNGG	3 cut(s)	522, 709, 824
BseMII	CTCAG	1 cut(s)	585
BsePI	GCGCGC	1 cut(s)	325
BseXI	GCAGC	5 cut(s)	77, 178, 181, 184, 905
BseYI	CCCAGC	1 cut(s)	144
Bsh1236I	CGCG	1 cut(s)	327
BshNI	GGYRCC	2 cut(s)	537, 932
BslI	CCNNNNNNNGG	3 cut(s)	522, 709, 824
BsmAI	GTCTC	3 cut(s)	113, 181, 623
BsmBI	CGTCTC	2 cut(s)	113, 181
BsmI	GAATGC	1 cut(s)	444
Bsp143I	GATC	7 cut(s)	136, 224, 414, 666, 766, 913, 1018
BspACI	CCGC	1 cut(s)	339
BspCNI	CTCAG	1 cut(s)	584
BspFNI	CGCG	1 cut(s)	327
BspLI	GGNNCC	2 cut(s)	539, 934
BspPI	GGATC	2 cut(s)	232, 661
BspT107I	GGYRCC	2 cut(s)	537, 932
BssHII	GCGCGC	1 cut(s)	325
BssMI	GATC	7 cut(s)	136, 224, 414, 666, 766, 913, 1018
BssNAI	GTATAC	1 cut(s)	1135
BssNI	GRCGYC	1 cut(s)	717
Bst1107I	GTATAC	1 cut(s)	1135
Bst2UI	CCWGG	2 cut(s)	353, 542
Bst4CI	ACNGT	3 cut(s)	254, 270, 276
Bst6I	CTCTTC	1 cut(s)	651
BstACI	GRCGYC	1 cut(s)	717
BstBAI	YACGTR	1 cut(s)	990
BstC8I	GCNNGC	3 cut(s)	132, 327, 874
BstDEI	CTNAG	1 cut(s)	571
BstF5I	GGATG	1 cut(s)	52
BstFNI	CGCG	1 cut(s)	327
BstHHI	GCGC	3 cut(s)	327, 329, 360
BstKTI	GATC	7 cut(s)	139, 227, 417, 669, 769, 916, 1021
BstMAI	GTCTC	3 cut(s)	113, 181, 623
BstMBI	GATC	7 cut(s)	136, 224, 414, 666, 766, 913, 1018
BstMWI	GCNNNNNNNGC	3 cut(s)	140, 172, 324
BstNI	CCWGG	2 cut(s)	353, 542
BstNSI	RCATGY	1 cut(s)	731
BstSCI	CCNGG	2 cut(s)	351, 540
BstSNI	TACGTA	1 cut(s)	990
BstUI	CGCG	1 cut(s)	327
BstV1I	GCAGC	5 cut(s)	77, 178, 181, 184, 905
BstV2I	GAAGAC	2 cut(s)	885, 1128
BstZ17I	GTATAC	1 cut(s)	1135
BtsCI	GGATG	1 cut(s)	52
BtsIMutI	CAGTG	1 cut(s)	874
Cac8I	GCNNGC	3 cut(s)	132, 327, 874
CaiI	CAGNNNCTG	1 cut(s)	873
CfoI	GCGC	3 cut(s)	327, 329, 360
CseI	GACGC	1 cut(s)	706
Csp6I	GTAC	2 cut(s)	364, 840
CviAII	CATG	5 cut(s)	400, 652, 664, 728, 937
CviQI	GTAC	2 cut(s)	364, 840
DdeI	CTNAG	1 cut(s)	571
DpnI	GATC	7 cut(s)	138, 226, 416, 668, 768, 915, 1020
DpnII	GATC	7 cut(s)	136, 224, 414, 666, 766, 913, 1018
DraI	TTTAAA	1 cut(s)	601
Eam1104I	CTCTTC	1 cut(s)	651
EarI	CTCTTC	1 cut(s)	651
Eco105I	TACGTA	1 cut(s)	990
Eco32I	GATATC	1 cut(s)	682
EcoRII	CCWGG	2 cut(s)	351, 540
EcoRV	GATATC	1 cut(s)	682
Esp3I	CGTCTC	2 cut(s)	113, 181
FaeI	CATG	5 cut(s)	403, 655, 667, 731, 940
FatI	CATG	5 cut(s)	399, 651, 663, 727, 936
FbaI	TGATCA	2 cut(s)	414, 1018
FblI	GTMKAC	2 cut(s)	780, 1134
Fnu4HI	GCNGC	5 cut(s)	91, 167, 170, 173, 894
FokI	GGATG	1 cut(s)	39
Fsp4HI	GCNGC	5 cut(s)	91, 167, 170, 173, 894
FspBI	CTAG	1 cut(s)	831
GlaI	GCGC	3 cut(s)	326, 328, 359
GluI	GCNGC	5 cut(s)	91, 167, 170, 173, 894
GsaI	CCCAGC	1 cut(s)	148
HgaI	GACGC	1 cut(s)	706
HhaI	GCGC	3 cut(s)	327, 329, 360
Hin1I	GRCGYC	1 cut(s)	717
Hin1II	CATG	5 cut(s)	403, 655, 667, 731, 940
Hin6I	GCGC	3 cut(s)	325, 327, 358
HinP1I	GCGC	3 cut(s)	325, 327, 358
HincII	GTYRAC	1 cut(s)	616
HindII	GTYRAC	1 cut(s)	616
HinfI	GANTC	3 cut(s)	487, 551, 1062
HphI	GGTGA	4 cut(s)	54, 222, 258, 264
Hpy166II	GTNNAC	4 cut(s)	257, 616, 781, 1135
Hpy188I	TCNGA	4 cut(s)	114, 186, 460, 1120
Hpy188III	TCNNGA	5 cut(s)	573, 644, 764, 1059, 1066
Hpy8I	GTNNAC	4 cut(s)	257, 616, 781, 1135
Hpy99I	CGWCG	3 cut(s)	244, 611, 629
HpyAV	CCTTC	4 cut(s)	152, 461, 799, 831
HpyCH4III	ACNGT	3 cut(s)	254, 270, 276
HpyCH4IV	ACGT	2 cut(s)	777, 989
HpyCH4V	TGCA	3 cut(s)	24, 444, 864
HpyF10VI	GCNNNNNNNGC	3 cut(s)	140, 172, 324
HpyF3I	CTNAG	1 cut(s)	571
HpySE526I	ACGT	2 cut(s)	777, 989
Hsp92I	GRCGYC	1 cut(s)	717
Hsp92II	CATG	5 cut(s)	403, 655, 667, 731, 940
HspAI	GCGC	3 cut(s)	325, 327, 358
Ksp22I	TGATCA	2 cut(s)	414, 1018
Kzo9I	GATC	7 cut(s)	136, 224, 414, 666, 766, 913, 1018
LmnI	GCTCC	1 cut(s)	355
Lsp1109I	GCAGC	5 cut(s)	77, 178, 181, 184, 905
LweI	GCATC	3 cut(s)	730, 873, 1037
MaeI	CTAG	1 cut(s)	831
MaeII	ACGT	2 cut(s)	777, 989
MaeIII	GTNAC	4 cut(s)	76, 270, 343, 718
MalI	GATC	7 cut(s)	138, 226, 416, 668, 768, 915, 1020
MboI	GATC	7 cut(s)	136, 224, 414, 666, 766, 913, 1018
MboII	GAAGA	8 cut(s)	473, 476, 511, 668, 890, 976, 1133, 1153
MfeI	CAATTG	2 cut(s)	10, 19
MlyI	GAGTC	1 cut(s)	481
MmeI	TCCRAC	1 cut(s)	80
MseI	TTAA	5 cut(s)	108, 207, 302, 600, 1035
MspA1I	CMGCKG	2 cut(s)	134, 201
MspR9I	CCNGG	2 cut(s)	353, 542
MunI	CAATTG	2 cut(s)	10, 19
Mva1269I	GAATGC	1 cut(s)	444
MvaI	CCWGG	2 cut(s)	353, 542
MvnI	CGCG	1 cut(s)	327
MwoI	GCNNNNNNNGC	3 cut(s)	140, 172, 324
NdeII	GATC	7 cut(s)	136, 224, 414, 666, 766, 913, 1018
NlaIII	CATG	5 cut(s)	403, 655, 667, 731, 940
NlaIV	GGNNCC	2 cut(s)	539, 934
NmuCI	GTSAC	3 cut(s)	270, 343, 718
NspI	RCATGY	1 cut(s)	731
PauI	GCGCGC	1 cut(s)	325
PcsI	WCGNNNNNNNCGW	1 cut(s)	624
PctI	GAATGC	1 cut(s)	444
PfeI	GAWTC	2 cut(s)	551, 1062
PkrI	GCNGC	5 cut(s)	92, 168, 171, 174, 895
PleI	GAGTC	1 cut(s)	481
PpsI	GAGTC	1 cut(s)	481
Ppu21I	YACGTR	1 cut(s)	990
PshBI	ATTAAT	2 cut(s)	207, 1035
Psp6I	CCWGG	2 cut(s)	351, 540
PspFI	CCCAGC	1 cut(s)	144
PspGI	CCWGG	2 cut(s)	351, 540
PspN4I	GGNNCC	2 cut(s)	539, 934
PstNI	CAGNNNCTG	1 cut(s)	873
PteI	GCGCGC	1 cut(s)	325
PvuII	CAGCTG	2 cut(s)	134, 201
RsaI	GTAC	2 cut(s)	365, 841
RsaNI	GTAC	2 cut(s)	364, 840
SaqAI	TTAA	5 cut(s)	108, 207, 302, 600, 1035
SatI	GCNGC	5 cut(s)	91, 167, 170, 173, 894
Sau3AI	GATC	7 cut(s)	136, 224, 414, 666, 766, 913, 1018
SchI	GAGTC	1 cut(s)	481
ScrFI	CCNGG	2 cut(s)	353, 542
SfaNI	GCATC	3 cut(s)	730, 873, 1037
SmlI	CTYRAG	2 cut(s)	707, 1066
SmoI	CTYRAG	2 cut(s)	707, 1066
SnaBI	TACGTA	1 cut(s)	990
SsiI	CCGC	1 cut(s)	339
SspMI	CTAG	1 cut(s)	831
StyD4I	CCNGG	2 cut(s)	351, 540
TaaI	ACNGT	3 cut(s)	254, 270, 276
TaiI	ACGT	2 cut(s)	780, 992
TaqI	TCGA	5 cut(s)	624, 916, 1005, 1081, 1128
TatI	WGTACW	2 cut(s)	363, 839
TfiI	GAWTC	2 cut(s)	551, 1062
Tru1I	TTAA	5 cut(s)	108, 207, 302, 600, 1035
Tru9I	TTAA	5 cut(s)	108, 207, 302, 600, 1035
TscAI	CASTG	1 cut(s)	874
TseFI	GTSAC	3 cut(s)	270, 343, 718
TseI	GCWGC	5 cut(s)	90, 166, 169, 172, 893
Tsp45I	GTSAC	3 cut(s)	270, 343, 718
TspDTI	ATGAA	4 cut(s)	416, 640, 941, 977
TspGWI	ACGGA	1 cut(s)	594
TspRI	CASTG	1 cut(s)	874
VspI	ATTAAT	2 cut(s)	207, 1035
XapI	RAATTY	2 cut(s)	1023, 1145
XceI	RCATGY	1 cut(s)	731
XmiI	GTMKAC	2 cut(s)	780, 1134
XspI	CTAG	1 cut(s)	831

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.