Ninja-family protein AFP3-like
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G29575 AT3G29575 AT3G29575 |
| fragaria_vesca | FvH4_5g13760 FvH4_6g46820 FvH4_6g46820 |
| malus_domestica | MD09G1067200.v1.1 MD17G1060200.v1.1 |
| prunus_persica | Prupe.5G205900_v2.0.a1 Prupe.5G205900_v2.0.a1 Prupe.5G205900_v2.0.a1 Prupe.5G205900_v2.0.a1 |
| pyrus_communis | pycom06g18020 pycom111g05650 pycom13g23090 pycom17g05990 |
| rosa_chinensis | RchiOBHm_Chr2g0165801 RchiOBHm_Chr7g0183181 |
| rosa_laevigata | RLG00000005069 RLG00000021557 |
| rosa_multiflora | Rmu_co8279591.1_g000001 Rmu_co8332333.1_g000001 Rmu_sc0001861.1_g000014 Rmu_sc0003227.1_g000009 Rmu_sc0006832.1_g000002 Rmu_sc0012318.1_g000002 Rmu_ssc0000111.1_g000018 |
| rosa_roxburghii | Rroxscaffold_2G00085490 Rroxscaffold_3G00270680 |
| rosa_rugosa | Rorug02G0517800 Rorug06G0454600 |
| rosa_samantha | Rh2AG583500 Rh2BG595600 Rh2CG221700 Rh2CG566300 Rh2DG605400 Rh7AG057000 Rh7BG056700 Rh7CG057800 Rh7DG056600 |
| rosa_wichuraiana | Rw2G048660 Rw7G004650 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 2 cut(s) | 313, 445 |
| AccBSI | CCGCTC | 1 cut(s) | 761 |
| AccI | GTMKAC | 1 cut(s) | 881 |
| AccII | CGCG | 4 cut(s) | 206, 307, 309, 311 |
| AclWI | GGATC | 1 cut(s) | 462 |
| AcoI | YGGCCR | 1 cut(s) | 594 |
| AcsI | RAATTY | 1 cut(s) | 119 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 55, 56, 747, 765, 830 |
| AflIII | ACRYGT | 2 cut(s) | 284, 855 |
| AgsI | TTSAA | 3 cut(s) | 71, 442, 1042 |
| AjiI | CACGTC | 1 cut(s) | 1027 |
| AjnI | CCWGG | 1 cut(s) | 165 |
| AluBI | AGCT | 7 cut(s) | 130, 160, 379, 387, 430, 704, 981 |
| AluI | AGCT | 7 cut(s) | 130, 160, 379, 387, 430, 704, 981 |
| Alw21I | GWGCWC | 3 cut(s) | 381, 672, 1035 |
| Alw26I | GTCTC | 2 cut(s) | 275, 341 |
| Alw44I | GTGCAC | 1 cut(s) | 668 |
| AlwI | GGATC | 1 cut(s) | 462 |
| Ama87I | CYCGRG | 1 cut(s) | 603 |
| AoxI | GGCC | 4 cut(s) | 169, 594, 832, 895 |
| ApaLI | GTGCAC | 1 cut(s) | 668 |
| ApeKI | GCWGC | 3 cut(s) | 427, 650, 978 |
| ApoI | RAATTY | 1 cut(s) | 119 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 757, 789 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 921 |
| AspLEI | GCGC | 2 cut(s) | 309, 311 |
| AspS9I | GGNCC | 4 cut(s) | 169, 199, 833, 896 |
| AsuC2I | CCSGG | 3 cut(s) | 114, 266, 464 |
| AsuHPI | GGTGA | 3 cut(s) | 956, 1034, 1066 |
| AsuNHI | GCTAGC | 1 cut(s) | 736 |
| AvaI | CYCGRG | 1 cut(s) | 603 |
| AvaII | GGWCC | 1 cut(s) | 199 |
| BaeGI | GKGCMC | 1 cut(s) | 672 |
| BanI | GGYRCC | 2 cut(s) | 313, 445 |
| BanII | GRGCYC | 1 cut(s) | 381 |
| Bbv12I | GWGCWC | 3 cut(s) | 381, 672, 1035 |
| BbvCI | CCTCAGC | 1 cut(s) | 431 |
| BbvI | GCAGC | 3 cut(s) | 439, 637, 990 |
| BccI | CCATC | 1 cut(s) | 887 |
| BceAI | ACGGC | 1 cut(s) | 487 |
| BciT130I | CCWGG | 1 cut(s) | 167 |
| BcnI | CCSGG | 3 cut(s) | 114, 266, 464 |
| BcoDI | GTCTC | 2 cut(s) | 275, 341 |
| BfaI | CTAG | 2 cut(s) | 737, 1062 |
| BfmI | CTRYAG | 1 cut(s) | 1073 |
| BisI | GCNGC | 6 cut(s) | 428, 475, 492, 597, 651, 979 |
| BlpI | GCTNAGC | 1 cut(s) | 161 |
| BlsI | GCNGC | 6 cut(s) | 429, 476, 493, 598, 652, 980 |
| Bme1390I | CCNGG | 4 cut(s) | 114, 167, 266, 464 |
| Bme18I | GGWCC | 1 cut(s) | 199 |
| BmeT110I | CYCGRG | 1 cut(s) | 603 |
| BmgBI | CACGTC | 1 cut(s) | 1027 |
| BmgT120I | GGNCC | 4 cut(s) | 169, 199, 833, 896 |
| BmiI | GGNNCC | 5 cut(s) | 201, 315, 447, 461, 835 |
| BmrFI | CCNGG | 4 cut(s) | 114, 167, 266, 464 |
| BmrI | ACTGGG | 2 cut(s) | 630, 812 |
| BmsI | GCATC | 2 cut(s) | 555, 608 |
| BmtI | GCTAGC | 1 cut(s) | 740 |
| BmuI | ACTGGG | 2 cut(s) | 630, 812 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 119, 151 |
| BpmI | CTGGAG | 1 cut(s) | 365 |
| Bpu10I | CCTNAGC | 1 cut(s) | 431 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 161 |
| BpuEI | CTTGAG | 2 cut(s) | 409, 645 |
| BpuMI | CCSGG | 3 cut(s) | 114, 266, 464 |
| BsaJI | CCNNGG | 6 cut(s) | 138, 166, 264, 449, 746, 973 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 1022, 1052 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 55, 56, 747, 765, 830 |
| Bse118I | RCCGGY | 2 cut(s) | 592, 991 |
| Bse1I | ACTGG | 2 cut(s) | 625, 818 |
| Bse3DI | GCAATG | 1 cut(s) | 564 |
| BseBI | CCWGG | 1 cut(s) | 167 |
| BseDI | CCNNGG | 6 cut(s) | 138, 166, 264, 449, 746, 973 |
| BseGI | GGATG | 3 cut(s) | 550, 570, 756 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 55, 56, 747, 765, 830 |
| BseMI | GCAATG | 1 cut(s) | 564 |
| BseMII | CTCAG | 5 cut(s) | 152, 422, 627, 714, 719 |
| BseNI | ACTGG | 2 cut(s) | 625, 818 |
| BsePI | GCGCGC | 1 cut(s) | 307 |
| BseRI | GAGGAG | 5 cut(s) | 164, 368, 371, 406, 497 |
| BseSI | GKGCMC | 1 cut(s) | 672 |
| BseX3I | CGGCCG | 1 cut(s) | 594 |
| BseXI | GCAGC | 3 cut(s) | 439, 637, 990 |
| BseYI | CCCAGC | 1 cut(s) | 36 |
| Bsh1236I | CGCG | 4 cut(s) | 206, 307, 309, 311 |
| Bsh1285I | CGRYCG | 2 cut(s) | 187, 597 |
| BshFI | GGCC | 4 cut(s) | 171, 596, 834, 897 |
| BshNI | GGYRCC | 2 cut(s) | 313, 445 |
| BsiEI | CGRYCG | 2 cut(s) | 187, 597 |
| BsiHKAI | GWGCWC | 3 cut(s) | 381, 672, 1035 |
| BsiHKCI | CYCGRG | 1 cut(s) | 603 |
| BsiSI | CCGG | 7 cut(s) | 99, 113, 266, 463, 593, 831, 992 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 55, 56, 747, 765, 830 |
| BsmAI | GTCTC | 2 cut(s) | 275, 341 |
| BsnI | GGCC | 4 cut(s) | 171, 596, 834, 897 |
| BsoBI | CYCGRG | 1 cut(s) | 603 |
| Bsp1286I | GDGCHC | 3 cut(s) | 381, 672, 1035 |
| Bsp143I | GATC | 1 cut(s) | 454 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 161 |
| Bsp19I | CCATGG | 1 cut(s) | 973 |
| BspANI | GGCC | 4 cut(s) | 171, 596, 834, 897 |
| BspCNI | CTCAG | 5 cut(s) | 153, 423, 628, 715, 718 |
| BspFNI | CGCG | 4 cut(s) | 206, 307, 309, 311 |
| BspLI | GGNNCC | 5 cut(s) | 201, 315, 447, 461, 835 |
| BspOI | GCTAGC | 1 cut(s) | 740 |
| BspPI | GGATC | 1 cut(s) | 462 |
| BspT107I | GGYRCC | 2 cut(s) | 313, 445 |
| BsrBI | CCGCTC | 1 cut(s) | 761 |
| BsrDI | GCAATG | 1 cut(s) | 564 |
| BsrFI | RCCGGY | 2 cut(s) | 592, 991 |
| BsrI | ACTGG | 2 cut(s) | 625, 818 |
| BssAI | RCCGGY | 2 cut(s) | 592, 991 |
| BssECI | CCNNGG | 6 cut(s) | 138, 166, 264, 449, 746, 973 |
| BssHII | GCGCGC | 1 cut(s) | 307 |
| BssMI | GATC | 1 cut(s) | 454 |
| BssT1I | CCWWGG | 2 cut(s) | 746, 973 |
| Bst2UI | CCWGG | 1 cut(s) | 167 |
| Bst4CI | ACNGT | 4 cut(s) | 107, 185, 806, 1074 |
| Bst6I | CTCTTC | 4 cut(s) | 273, 362, 401, 407 |
| BstC8I | GCNNGC | 6 cut(s) | 309, 738, 869, 993, 1011, 1015 |
| BstDEI | CTNAG | 5 cut(s) | 161, 431, 636, 705, 723 |
| BstDSI | CCRYGG | 1 cut(s) | 973 |
| BstF5I | GGATG | 3 cut(s) | 550, 570, 756 |
| BstFNI | CGCG | 4 cut(s) | 206, 307, 309, 311 |
| BstHHI | GCGC | 2 cut(s) | 309, 311 |
| BstKTI | GATC | 1 cut(s) | 457 |
| BstMAI | GTCTC | 2 cut(s) | 275, 341 |
| BstMBI | GATC | 1 cut(s) | 454 |
| BstMCI | CGRYCG | 2 cut(s) | 187, 597 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 313, 500, 978 |
| BstNI | CCWGG | 1 cut(s) | 167 |
| BstNSI | RCATGY | 3 cut(s) | 288, 871, 1013 |
| BstSCI | CCNGG | 4 cut(s) | 112, 165, 264, 462 |
| BstSFI | CTRYAG | 1 cut(s) | 1073 |
| BstSLI | GKGCMC | 1 cut(s) | 672 |
| BstUI | CGCG | 4 cut(s) | 206, 307, 309, 311 |
| BstV1I | GCAGC | 3 cut(s) | 439, 637, 990 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 220 |
| BstZI | CGGCCG | 1 cut(s) | 594 |
| BsuRI | GGCC | 4 cut(s) | 171, 596, 834, 897 |
| BtgI | CCRYGG | 1 cut(s) | 973 |
| BtgZI | GCGATG | 1 cut(s) | 492 |
| BtrI | CACGTC | 1 cut(s) | 1027 |
| BtsCI | GGATG | 3 cut(s) | 550, 570, 756 |
| Cac8I | GCNNGC | 6 cut(s) | 309, 738, 869, 993, 1011, 1015 |
| CfoI | GCGC | 2 cut(s) | 309, 311 |
| Cfr10I | RCCGGY | 2 cut(s) | 592, 991 |
| Cfr13I | GGNCC | 4 cut(s) | 169, 199, 833, 896 |
| CviAII | CATG | 5 cut(s) | 285, 771, 868, 974, 1010 |
| DdeI | CTNAG | 5 cut(s) | 161, 431, 636, 705, 723 |
| DpnI | GATC | 1 cut(s) | 456 |
| DpnII | GATC | 1 cut(s) | 454 |
| EaeI | YGGCCR | 1 cut(s) | 594 |
| EagI | CGGCCG | 1 cut(s) | 594 |
| Eam1104I | CTCTTC | 4 cut(s) | 273, 362, 401, 407 |
| EarI | CTCTTC | 4 cut(s) | 273, 362, 401, 407 |
| EciI | GGCGGA | 3 cut(s) | 509, 573, 1010 |
| Ecl136II | GAGCTC | 1 cut(s) | 379 |
| EclXI | CGGCCG | 1 cut(s) | 594 |
| Eco130I | CCWWGG | 2 cut(s) | 746, 973 |
| Eco24I | GRGCYC | 1 cut(s) | 381 |
| Eco47I | GGWCC | 1 cut(s) | 199 |
| Eco52I | CGGCCG | 1 cut(s) | 594 |
| Eco53kI | GAGCTC | 1 cut(s) | 379 |
| Eco88I | CYCGRG | 1 cut(s) | 603 |
| EcoICRI | GAGCTC | 1 cut(s) | 379 |
| EcoRII | CCWGG | 1 cut(s) | 165 |
| EcoT14I | CCWWGG | 2 cut(s) | 746, 973 |
| EcoT38I | GRGCYC | 1 cut(s) | 381 |
| ErhI | CCWWGG | 2 cut(s) | 746, 973 |
| FaeI | CATG | 5 cut(s) | 288, 774, 871, 977, 1013 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 909, 941 |
| FatI | CATG | 5 cut(s) | 284, 770, 867, 973, 1009 |
| FauI | CCCGC | 2 cut(s) | 14, 211 |
| FblI | GTMKAC | 1 cut(s) | 881 |
| Fnu4HI | GCNGC | 6 cut(s) | 428, 475, 492, 597, 651, 979 |
| FokI | GGATG | 3 cut(s) | 557, 577, 763 |
| FriOI | GRGCYC | 1 cut(s) | 381 |
| Fsp4HI | GCNGC | 6 cut(s) | 428, 475, 492, 597, 651, 979 |
| FspBI | CTAG | 2 cut(s) | 737, 1062 |
| GlaI | GCGC | 2 cut(s) | 308, 310 |
| GluI | GCNGC | 6 cut(s) | 428, 475, 492, 597, 651, 979 |
| GsaI | CCCAGC | 1 cut(s) | 40 |
| GsuI | CTGGAG | 1 cut(s) | 365 |
| HaeIII | GGCC | 4 cut(s) | 171, 596, 834, 897 |
| HapII | CCGG | 7 cut(s) | 99, 113, 266, 463, 593, 831, 992 |
| HhaI | GCGC | 2 cut(s) | 309, 311 |
| Hin1II | CATG | 5 cut(s) | 288, 774, 871, 977, 1013 |
| Hin6I | GCGC | 2 cut(s) | 307, 309 |
| HinP1I | GCGC | 2 cut(s) | 307, 309 |
| HinfI | GANTC | 5 cut(s) | 143, 632, 786, 827, 1057 |
| HpaII | CCGG | 7 cut(s) | 99, 113, 266, 463, 593, 831, 992 |
| HphI | GGTGA | 3 cut(s) | 956, 1034, 1066 |
| Hpy166II | GTNNAC | 3 cut(s) | 199, 670, 882 |
| Hpy188III | TCNNGA | 4 cut(s) | 382, 603, 824, 847 |
| Hpy8I | GTNNAC | 3 cut(s) | 199, 670, 882 |
| Hpy99I | CGWCG | 3 cut(s) | 241, 307, 346 |
| HpyAV | CCTTC | 8 cut(s) | 11, 367, 436, 481, 529, 721, 911, 934 |
| HpyCH4III | ACNGT | 4 cut(s) | 107, 185, 806, 1074 |
| HpyCH4IV | ACGT | 2 cut(s) | 855, 1026 |
| HpyCH4V | TGCA | 4 cut(s) | 55, 670, 678, 1013 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 313, 500, 978 |
| HpyF3I | CTNAG | 5 cut(s) | 161, 431, 636, 705, 723 |
| HpySE526I | ACGT | 2 cut(s) | 855, 1026 |
| Hsp92II | CATG | 5 cut(s) | 288, 774, 871, 977, 1013 |
| HspAI | GCGC | 2 cut(s) | 307, 309 |
| KroI | GCCGGC | 1 cut(s) | 991 |
| KroNI | GCCGGC | 1 cut(s) | 993 |
| Kzo9I | GATC | 1 cut(s) | 454 |
| LmnI | GCTCC | 6 cut(s) | 127, 376, 384, 459, 586, 1030 |
| Lsp1109I | GCAGC | 3 cut(s) | 439, 637, 990 |
| LweI | GCATC | 2 cut(s) | 555, 608 |
| MaeI | CTAG | 2 cut(s) | 737, 1062 |
| MaeII | ACGT | 2 cut(s) | 855, 1026 |
| MaeIII | GTNAC | 2 cut(s) | 1022, 1068 |
| MalI | GATC | 1 cut(s) | 456 |
| MauBI | CGCGCGCG | 1 cut(s) | 307 |
| MbiI | CCGCTC | 1 cut(s) | 761 |
| MboI | GATC | 1 cut(s) | 454 |
| MboII | GAAGA | 5 cut(s) | 287, 290, 379, 418, 424 |
| MfeI | CAATTG | 1 cut(s) | 571 |
| MhlI | GDGCHC | 3 cut(s) | 381, 672, 1035 |
| MluCI | AATT | 3 cut(s) | 64, 119, 571 |
| MlyI | GAGTC | 2 cut(s) | 795, 1066 |
| MmeI | TCCRAC | 3 cut(s) | 365, 399, 840 |
| MreI | CGCCGGCG | 1 cut(s) | 991 |
| MroNI | GCCGGC | 1 cut(s) | 991 |
| MroXI | GAANNNNTTC | 1 cut(s) | 921 |
| MspA1I | CMGCKG | 1 cut(s) | 430 |
| MspI | CCGG | 7 cut(s) | 99, 113, 266, 463, 593, 831, 992 |
| MspR9I | CCNGG | 4 cut(s) | 114, 167, 266, 464 |
| MunI | CAATTG | 1 cut(s) | 571 |
| MvaI | CCWGG | 1 cut(s) | 167 |
| MvnI | CGCG | 4 cut(s) | 206, 307, 309, 311 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 313, 500, 978 |
| NaeI | GCCGGC | 1 cut(s) | 993 |
| NciI | CCSGG | 3 cut(s) | 114, 266, 464 |
| NcoI | CCATGG | 1 cut(s) | 973 |
| NdeII | GATC | 1 cut(s) | 454 |
| NgoMIV | GCCGGC | 1 cut(s) | 991 |
| NheI | GCTAGC | 1 cut(s) | 736 |
| NlaIII | CATG | 5 cut(s) | 288, 774, 871, 977, 1013 |
| NlaIV | GGNNCC | 5 cut(s) | 201, 315, 447, 461, 835 |
| NmeAIII | GCCGAG | 1 cut(s) | 474 |
| NmuCI | GTSAC | 1 cut(s) | 1022 |
| NspI | RCATGY | 3 cut(s) | 288, 871, 1013 |
| PaeI | GCATGC | 2 cut(s) | 871, 1013 |
| PaeR7I | CTCGAG | 1 cut(s) | 603 |
| PauI | GCGCGC | 1 cut(s) | 307 |
| PciI | ACATGT | 1 cut(s) | 284 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 852 |
| PdiI | GCCGGC | 1 cut(s) | 993 |
| PdmI | GAANNNNTTC | 1 cut(s) | 921 |
| PfeI | GAWTC | 3 cut(s) | 143, 632, 827 |
| PfoI | TCCNGGA | 1 cut(s) | 112 |
| PkrI | GCNGC | 6 cut(s) | 429, 476, 493, 598, 652, 980 |
| PleI | GAGTC | 2 cut(s) | 794, 1065 |
| PpsI | GAGTC | 2 cut(s) | 794, 1065 |
| PscI | ACATGT | 1 cut(s) | 284 |
| Psp124BI | GAGCTC | 1 cut(s) | 381 |
| Psp6I | CCWGG | 1 cut(s) | 165 |
| PspFI | CCCAGC | 1 cut(s) | 36 |
| PspGI | CCWGG | 1 cut(s) | 165 |
| PspN4I | GGNNCC | 5 cut(s) | 201, 315, 447, 461, 835 |
| PspPI | GGNCC | 4 cut(s) | 169, 199, 833, 896 |
| PteI | GCGCGC | 1 cut(s) | 307 |
| PvuII | CAGCTG | 1 cut(s) | 430 |
| SacI | GAGCTC | 1 cut(s) | 381 |
| SatI | GCNGC | 6 cut(s) | 428, 475, 492, 597, 651, 979 |
| Sau3AI | GATC | 1 cut(s) | 454 |
| Sau96I | GGNCC | 4 cut(s) | 169, 199, 833, 896 |
| SchI | GAGTC | 2 cut(s) | 795, 1066 |
| ScrFI | CCNGG | 4 cut(s) | 114, 167, 266, 464 |
| SduI | GDGCHC | 3 cut(s) | 381, 672, 1035 |
| SfaNI | GCATC | 2 cut(s) | 555, 608 |
| SfcI | CTRYAG | 1 cut(s) | 1073 |
| Sfr274I | CTCGAG | 1 cut(s) | 603 |
| SgrAI | CRCCGGYG | 1 cut(s) | 991 |
| SinI | GGWCC | 1 cut(s) | 199 |
| SlaI | CTCGAG | 1 cut(s) | 603 |
| SmlI | CTYRAG | 3 cut(s) | 388, 603, 660 |
| SmoI | CTYRAG | 3 cut(s) | 388, 603, 660 |
| SphI | GCATGC | 2 cut(s) | 871, 1013 |
| Sse9I | AATT | 3 cut(s) | 64, 119, 571 |
| SspMI | CTAG | 2 cut(s) | 737, 1062 |
| SstI | GAGCTC | 1 cut(s) | 381 |
| StyD4I | CCNGG | 4 cut(s) | 112, 165, 264, 462 |
| StyI | CCWWGG | 2 cut(s) | 746, 973 |
| TaaI | ACNGT | 4 cut(s) | 107, 185, 806, 1074 |
| TaiI | ACGT | 2 cut(s) | 858, 1029 |
| TaqI | TCGA | 1 cut(s) | 604 |
| TasI | AATT | 3 cut(s) | 64, 119, 571 |
| TauI | GCSGC | 3 cut(s) | 477, 494, 599 |
| TfiI | GAWTC | 3 cut(s) | 143, 632, 827 |
| TseFI | GTSAC | 1 cut(s) | 1022 |
| TseI | GCWGC | 3 cut(s) | 427, 650, 978 |
| Tsp45I | GTSAC | 1 cut(s) | 1022 |
| TspDTI | ATGAA | 2 cut(s) | 503, 769 |
| TspGWI | ACGGA | 2 cut(s) | 359, 1056 |
| VneI | GTGCAC | 1 cut(s) | 668 |
| VpaK11BI | GGWCC | 1 cut(s) | 199 |
| XapI | RAATTY | 1 cut(s) | 119 |
| XceI | RCATGY | 3 cut(s) | 288, 871, 1013 |
| XhoI | CTCGAG | 1 cut(s) | 603 |
| XmiI | GTMKAC | 1 cut(s) | 881 |
| XmnI | GAANNNNTTC | 1 cut(s) | 921 |
| XspI | CTAG | 2 cut(s) | 737, 1062 |