MD09G1067200.v1.1

Ninja-family protein AFP3-like

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr09
Physical Location & Seq
Reverse (-)
4563531 .. 4566481
2951 bp
Loading structure...
UTR
Exon/CDS
Intron
MD09G1067200.v1.1.491

Sequence Viewer

Length: 1077 bp
ATGGCTCAAACAGAGGAAGGCGGGAACATAGCAACCCAGCAGGAGTTCCCAATGCAGGGGAGTAATTTTCAAGGCGATTTGTATGGGAAAATGGTTGCCGGAAACAGTTTTCCGGGAAAATTCGGGGAGCTGACCTCCGAGGATTCGGAGGAGATTGAGCTGAGCCTGGGCCTGTCGCTGAACGGTCGGTTCGGAGTGGACCCCGCGAGAGCCAAAATGGTGGCTCTGAAACGCTCGTCGTCAATCTCCGATTTCGGTTTTACCCCGGCAAGAGAAGAAGAGACATGTGGTGTGTCAGCCTCGTCGCGCGCGGTGCCTCTGATGAGGACTTGTTCGCTTCCGACGGAGACAGAGGAGGAGTGGAGGAAGAGGAAGGAGCTCCAGAGCTTGAGGAGAATGGAAGCGAAGAGGAAGAGGTCGGAGAAGCAGCTGAGGAACTTGAAGGTGCCGAGGGATCGGAGCCGGGAGAACGGCGGCGATGAGGAGAAGGCGGCGGAGGTAGCGAATGGGGTTCATAGGAAAGAGCAGTTTGTGAAGGTTGTGGATGAGTTTAGAGCAATGGGGATGCCCAATTGTCCTGCTCCGCCGATACCGGCCGCATCTCGAGGTAGTGGCTCAACTGGGATTTCGGAATCTGAGAGCCAATCTGCTGCTACGCCTCAAGGAGTGCACAAATGCACCGAAGCAAGAAGCCACGCCGAAGCTCAGTCTTTGCCAAAGACTGAGAAGGAACTGCTAGCCACACCAAGGATGATAACCGCTCAAAGGTCATGTCAGTTCATTGGAGTCCAAATGGAAATCAACTGTAATAAACCCCCAGTTCCAGAATCCGGCCCCAACAAAATCGTGAGGAACGTGTTGGAGAGCATGCCTTGTGTGTCTACGACAGGAGATGGCCCTGACGGGAAAAGAATAGAAGGGTTTCTTTACAGATACAAGAAGGGTGAGGAAGTTAGGATAGTATGCGTTTGCCATGGCAGCTTTCTCTCGCCGGCGGAGTTTGTGAAGCATGCAGGCGGTGGTGACGTGGAGCACCCGTTGAAGCATATAGTGGTGAGTCCTAGTCCGTTACTGTAG
Functional Annotation
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

359

Amino Acids

39.07

Weight (kDa)

7.57

Isoelectric Point (pI)

68.5

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
EAR PF07897 47 - 84 3.3e-17 Ethylene-responsive binding factor-associated repression
NLS_NINJA_AFP PF16136 107 - 143 4e-21 Putative nuclear localisation signal in Ninja/AFP proteins
TDBD PF16135 319 - 352 2.4e-08 Tify domain binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 313, 445
AccBSI CCGCTC 1 cut(s) 761
AccI GTMKAC 1 cut(s) 881
AccII CGCG 4 cut(s) 206, 307, 309, 311
AclWI GGATC 1 cut(s) 462
AcoI YGGCCR 1 cut(s) 594
AcsI RAATTY 1 cut(s) 119
AfiI CCNNNNNNNGG 5 cut(s) 55, 56, 747, 765, 830
AflIII ACRYGT 2 cut(s) 284, 855
AgsI TTSAA 3 cut(s) 71, 442, 1042
AjiI CACGTC 1 cut(s) 1027
AjnI CCWGG 1 cut(s) 165
AluBI AGCT 7 cut(s) 130, 160, 379, 387, 430, 704, 981
AluI AGCT 7 cut(s) 130, 160, 379, 387, 430, 704, 981
Alw21I GWGCWC 3 cut(s) 381, 672, 1035
Alw26I GTCTC 2 cut(s) 275, 341
Alw44I GTGCAC 1 cut(s) 668
AlwI GGATC 1 cut(s) 462
Ama87I CYCGRG 1 cut(s) 603
AoxI GGCC 4 cut(s) 169, 594, 832, 895
ApaLI GTGCAC 1 cut(s) 668
ApeKI GCWGC 3 cut(s) 427, 650, 978
ApoI RAATTY 1 cut(s) 119
ArsI GACNNNNNNTTYG 2 cut(s) 757, 789
Asp700I GAANNNNTTC 1 cut(s) 921
AspLEI GCGC 2 cut(s) 309, 311
AspS9I GGNCC 4 cut(s) 169, 199, 833, 896
AsuC2I CCSGG 3 cut(s) 114, 266, 464
AsuHPI GGTGA 3 cut(s) 956, 1034, 1066
AsuNHI GCTAGC 1 cut(s) 736
AvaI CYCGRG 1 cut(s) 603
AvaII GGWCC 1 cut(s) 199
BaeGI GKGCMC 1 cut(s) 672
BanI GGYRCC 2 cut(s) 313, 445
BanII GRGCYC 1 cut(s) 381
Bbv12I GWGCWC 3 cut(s) 381, 672, 1035
BbvCI CCTCAGC 1 cut(s) 431
BbvI GCAGC 3 cut(s) 439, 637, 990
BccI CCATC 1 cut(s) 887
BceAI ACGGC 1 cut(s) 487
BciT130I CCWGG 1 cut(s) 167
BcnI CCSGG 3 cut(s) 114, 266, 464
BcoDI GTCTC 2 cut(s) 275, 341
BfaI CTAG 2 cut(s) 737, 1062
BfmI CTRYAG 1 cut(s) 1073
BisI GCNGC 6 cut(s) 428, 475, 492, 597, 651, 979
BlpI GCTNAGC 1 cut(s) 161
BlsI GCNGC 6 cut(s) 429, 476, 493, 598, 652, 980
Bme1390I CCNGG 4 cut(s) 114, 167, 266, 464
Bme18I GGWCC 1 cut(s) 199
BmeT110I CYCGRG 1 cut(s) 603
BmgBI CACGTC 1 cut(s) 1027
BmgT120I GGNCC 4 cut(s) 169, 199, 833, 896
BmiI GGNNCC 5 cut(s) 201, 315, 447, 461, 835
BmrFI CCNGG 4 cut(s) 114, 167, 266, 464
BmrI ACTGGG 2 cut(s) 630, 812
BmsI GCATC 2 cut(s) 555, 608
BmtI GCTAGC 1 cut(s) 740
BmuI ACTGGG 2 cut(s) 630, 812
BplI GAGNNNNNCTC 2 cut(s) 119, 151
BpmI CTGGAG 1 cut(s) 365
Bpu10I CCTNAGC 1 cut(s) 431
Bpu1102I GCTNAGC 1 cut(s) 161
BpuEI CTTGAG 2 cut(s) 409, 645
BpuMI CCSGG 3 cut(s) 114, 266, 464
BsaJI CCNNGG 6 cut(s) 138, 166, 264, 449, 746, 973
BsaXI ACNNNNNCTCC 2 cut(s) 1022, 1052
Bsc4I CCNNNNNNNGG 5 cut(s) 55, 56, 747, 765, 830
Bse118I RCCGGY 2 cut(s) 592, 991
Bse1I ACTGG 2 cut(s) 625, 818
Bse3DI GCAATG 1 cut(s) 564
BseBI CCWGG 1 cut(s) 167
BseDI CCNNGG 6 cut(s) 138, 166, 264, 449, 746, 973
BseGI GGATG 3 cut(s) 550, 570, 756
BseLI CCNNNNNNNGG 5 cut(s) 55, 56, 747, 765, 830
BseMI GCAATG 1 cut(s) 564
BseMII CTCAG 5 cut(s) 152, 422, 627, 714, 719
BseNI ACTGG 2 cut(s) 625, 818
BsePI GCGCGC 1 cut(s) 307
BseRI GAGGAG 5 cut(s) 164, 368, 371, 406, 497
BseSI GKGCMC 1 cut(s) 672
BseX3I CGGCCG 1 cut(s) 594
BseXI GCAGC 3 cut(s) 439, 637, 990
BseYI CCCAGC 1 cut(s) 36
Bsh1236I CGCG 4 cut(s) 206, 307, 309, 311
Bsh1285I CGRYCG 2 cut(s) 187, 597
BshFI GGCC 4 cut(s) 171, 596, 834, 897
BshNI GGYRCC 2 cut(s) 313, 445
BsiEI CGRYCG 2 cut(s) 187, 597
BsiHKAI GWGCWC 3 cut(s) 381, 672, 1035
BsiHKCI CYCGRG 1 cut(s) 603
BsiSI CCGG 7 cut(s) 99, 113, 266, 463, 593, 831, 992
BslI CCNNNNNNNGG 5 cut(s) 55, 56, 747, 765, 830
BsmAI GTCTC 2 cut(s) 275, 341
BsnI GGCC 4 cut(s) 171, 596, 834, 897
BsoBI CYCGRG 1 cut(s) 603
Bsp1286I GDGCHC 3 cut(s) 381, 672, 1035
Bsp143I GATC 1 cut(s) 454
Bsp1720I GCTNAGC 1 cut(s) 161
Bsp19I CCATGG 1 cut(s) 973
BspANI GGCC 4 cut(s) 171, 596, 834, 897
BspCNI CTCAG 5 cut(s) 153, 423, 628, 715, 718
BspFNI CGCG 4 cut(s) 206, 307, 309, 311
BspLI GGNNCC 5 cut(s) 201, 315, 447, 461, 835
BspOI GCTAGC 1 cut(s) 740
BspPI GGATC 1 cut(s) 462
BspT107I GGYRCC 2 cut(s) 313, 445
BsrBI CCGCTC 1 cut(s) 761
BsrDI GCAATG 1 cut(s) 564
BsrFI RCCGGY 2 cut(s) 592, 991
BsrI ACTGG 2 cut(s) 625, 818
BssAI RCCGGY 2 cut(s) 592, 991
BssECI CCNNGG 6 cut(s) 138, 166, 264, 449, 746, 973
BssHII GCGCGC 1 cut(s) 307
BssMI GATC 1 cut(s) 454
BssT1I CCWWGG 2 cut(s) 746, 973
Bst2UI CCWGG 1 cut(s) 167
Bst4CI ACNGT 4 cut(s) 107, 185, 806, 1074
Bst6I CTCTTC 4 cut(s) 273, 362, 401, 407
BstC8I GCNNGC 6 cut(s) 309, 738, 869, 993, 1011, 1015
BstDEI CTNAG 5 cut(s) 161, 431, 636, 705, 723
BstDSI CCRYGG 1 cut(s) 973
BstF5I GGATG 3 cut(s) 550, 570, 756
BstFNI CGCG 4 cut(s) 206, 307, 309, 311
BstHHI GCGC 2 cut(s) 309, 311
BstKTI GATC 1 cut(s) 457
BstMAI GTCTC 2 cut(s) 275, 341
BstMBI GATC 1 cut(s) 454
BstMCI CGRYCG 2 cut(s) 187, 597
BstMWI GCNNNNNNNGC 3 cut(s) 313, 500, 978
BstNI CCWGG 1 cut(s) 167
BstNSI RCATGY 3 cut(s) 288, 871, 1013
BstSCI CCNGG 4 cut(s) 112, 165, 264, 462
BstSFI CTRYAG 1 cut(s) 1073
BstSLI GKGCMC 1 cut(s) 672
BstUI CGCG 4 cut(s) 206, 307, 309, 311
BstV1I GCAGC 3 cut(s) 439, 637, 990
BstXI CCANNNNNNTGG 1 cut(s) 220
BstZI CGGCCG 1 cut(s) 594
BsuRI GGCC 4 cut(s) 171, 596, 834, 897
BtgI CCRYGG 1 cut(s) 973
BtgZI GCGATG 1 cut(s) 492
BtrI CACGTC 1 cut(s) 1027
BtsCI GGATG 3 cut(s) 550, 570, 756
Cac8I GCNNGC 6 cut(s) 309, 738, 869, 993, 1011, 1015
CfoI GCGC 2 cut(s) 309, 311
Cfr10I RCCGGY 2 cut(s) 592, 991
Cfr13I GGNCC 4 cut(s) 169, 199, 833, 896
CviAII CATG 5 cut(s) 285, 771, 868, 974, 1010
DdeI CTNAG 5 cut(s) 161, 431, 636, 705, 723
DpnI GATC 1 cut(s) 456
DpnII GATC 1 cut(s) 454
EaeI YGGCCR 1 cut(s) 594
EagI CGGCCG 1 cut(s) 594
Eam1104I CTCTTC 4 cut(s) 273, 362, 401, 407
EarI CTCTTC 4 cut(s) 273, 362, 401, 407
EciI GGCGGA 3 cut(s) 509, 573, 1010
Ecl136II GAGCTC 1 cut(s) 379
EclXI CGGCCG 1 cut(s) 594
Eco130I CCWWGG 2 cut(s) 746, 973
Eco24I GRGCYC 1 cut(s) 381
Eco47I GGWCC 1 cut(s) 199
Eco52I CGGCCG 1 cut(s) 594
Eco53kI GAGCTC 1 cut(s) 379
Eco88I CYCGRG 1 cut(s) 603
EcoICRI GAGCTC 1 cut(s) 379
EcoRII CCWGG 1 cut(s) 165
EcoT14I CCWWGG 2 cut(s) 746, 973
EcoT38I GRGCYC 1 cut(s) 381
ErhI CCWWGG 2 cut(s) 746, 973
FaeI CATG 5 cut(s) 288, 774, 871, 977, 1013
FalI AAGNNNNNCTT 2 cut(s) 909, 941
FatI CATG 5 cut(s) 284, 770, 867, 973, 1009
FauI CCCGC 2 cut(s) 14, 211
FblI GTMKAC 1 cut(s) 881
Fnu4HI GCNGC 6 cut(s) 428, 475, 492, 597, 651, 979
FokI GGATG 3 cut(s) 557, 577, 763
FriOI GRGCYC 1 cut(s) 381
Fsp4HI GCNGC 6 cut(s) 428, 475, 492, 597, 651, 979
FspBI CTAG 2 cut(s) 737, 1062
GlaI GCGC 2 cut(s) 308, 310
GluI GCNGC 6 cut(s) 428, 475, 492, 597, 651, 979
GsaI CCCAGC 1 cut(s) 40
GsuI CTGGAG 1 cut(s) 365
HaeIII GGCC 4 cut(s) 171, 596, 834, 897
HapII CCGG 7 cut(s) 99, 113, 266, 463, 593, 831, 992
HhaI GCGC 2 cut(s) 309, 311
Hin1II CATG 5 cut(s) 288, 774, 871, 977, 1013
Hin6I GCGC 2 cut(s) 307, 309
HinP1I GCGC 2 cut(s) 307, 309
HinfI GANTC 5 cut(s) 143, 632, 786, 827, 1057
HpaII CCGG 7 cut(s) 99, 113, 266, 463, 593, 831, 992
HphI GGTGA 3 cut(s) 956, 1034, 1066
Hpy166II GTNNAC 3 cut(s) 199, 670, 882
Hpy188III TCNNGA 4 cut(s) 382, 603, 824, 847
Hpy8I GTNNAC 3 cut(s) 199, 670, 882
Hpy99I CGWCG 3 cut(s) 241, 307, 346
HpyAV CCTTC 8 cut(s) 11, 367, 436, 481, 529, 721, 911, 934
HpyCH4III ACNGT 4 cut(s) 107, 185, 806, 1074
HpyCH4IV ACGT 2 cut(s) 855, 1026
HpyCH4V TGCA 4 cut(s) 55, 670, 678, 1013
HpyF10VI GCNNNNNNNGC 3 cut(s) 313, 500, 978
HpyF3I CTNAG 5 cut(s) 161, 431, 636, 705, 723
HpySE526I ACGT 2 cut(s) 855, 1026
Hsp92II CATG 5 cut(s) 288, 774, 871, 977, 1013
HspAI GCGC 2 cut(s) 307, 309
KroI GCCGGC 1 cut(s) 991
KroNI GCCGGC 1 cut(s) 993
Kzo9I GATC 1 cut(s) 454
LmnI GCTCC 6 cut(s) 127, 376, 384, 459, 586, 1030
Lsp1109I GCAGC 3 cut(s) 439, 637, 990
LweI GCATC 2 cut(s) 555, 608
MaeI CTAG 2 cut(s) 737, 1062
MaeII ACGT 2 cut(s) 855, 1026
MaeIII GTNAC 2 cut(s) 1022, 1068
MalI GATC 1 cut(s) 456
MauBI CGCGCGCG 1 cut(s) 307
MbiI CCGCTC 1 cut(s) 761
MboI GATC 1 cut(s) 454
MboII GAAGA 5 cut(s) 287, 290, 379, 418, 424
MfeI CAATTG 1 cut(s) 571
MhlI GDGCHC 3 cut(s) 381, 672, 1035
MluCI AATT 3 cut(s) 64, 119, 571
MlyI GAGTC 2 cut(s) 795, 1066
MmeI TCCRAC 3 cut(s) 365, 399, 840
MreI CGCCGGCG 1 cut(s) 991
MroNI GCCGGC 1 cut(s) 991
MroXI GAANNNNTTC 1 cut(s) 921
MspA1I CMGCKG 1 cut(s) 430
MspI CCGG 7 cut(s) 99, 113, 266, 463, 593, 831, 992
MspR9I CCNGG 4 cut(s) 114, 167, 266, 464
MunI CAATTG 1 cut(s) 571
MvaI CCWGG 1 cut(s) 167
MvnI CGCG 4 cut(s) 206, 307, 309, 311
MwoI GCNNNNNNNGC 3 cut(s) 313, 500, 978
NaeI GCCGGC 1 cut(s) 993
NciI CCSGG 3 cut(s) 114, 266, 464
NcoI CCATGG 1 cut(s) 973
NdeII GATC 1 cut(s) 454
NgoMIV GCCGGC 1 cut(s) 991
NheI GCTAGC 1 cut(s) 736
NlaIII CATG 5 cut(s) 288, 774, 871, 977, 1013
NlaIV GGNNCC 5 cut(s) 201, 315, 447, 461, 835
NmeAIII GCCGAG 1 cut(s) 474
NmuCI GTSAC 1 cut(s) 1022
NspI RCATGY 3 cut(s) 288, 871, 1013
PaeI GCATGC 2 cut(s) 871, 1013
PaeR7I CTCGAG 1 cut(s) 603
PauI GCGCGC 1 cut(s) 307
PciI ACATGT 1 cut(s) 284
PcsI WCGNNNNNNNCGW 1 cut(s) 852
PdiI GCCGGC 1 cut(s) 993
PdmI GAANNNNTTC 1 cut(s) 921
PfeI GAWTC 3 cut(s) 143, 632, 827
PfoI TCCNGGA 1 cut(s) 112
PkrI GCNGC 6 cut(s) 429, 476, 493, 598, 652, 980
PleI GAGTC 2 cut(s) 794, 1065
PpsI GAGTC 2 cut(s) 794, 1065
PscI ACATGT 1 cut(s) 284
Psp124BI GAGCTC 1 cut(s) 381
Psp6I CCWGG 1 cut(s) 165
PspFI CCCAGC 1 cut(s) 36
PspGI CCWGG 1 cut(s) 165
PspN4I GGNNCC 5 cut(s) 201, 315, 447, 461, 835
PspPI GGNCC 4 cut(s) 169, 199, 833, 896
PteI GCGCGC 1 cut(s) 307
PvuII CAGCTG 1 cut(s) 430
SacI GAGCTC 1 cut(s) 381
SatI GCNGC 6 cut(s) 428, 475, 492, 597, 651, 979
Sau3AI GATC 1 cut(s) 454
Sau96I GGNCC 4 cut(s) 169, 199, 833, 896
SchI GAGTC 2 cut(s) 795, 1066
ScrFI CCNGG 4 cut(s) 114, 167, 266, 464
SduI GDGCHC 3 cut(s) 381, 672, 1035
SfaNI GCATC 2 cut(s) 555, 608
SfcI CTRYAG 1 cut(s) 1073
Sfr274I CTCGAG 1 cut(s) 603
SgrAI CRCCGGYG 1 cut(s) 991
SinI GGWCC 1 cut(s) 199
SlaI CTCGAG 1 cut(s) 603
SmlI CTYRAG 3 cut(s) 388, 603, 660
SmoI CTYRAG 3 cut(s) 388, 603, 660
SphI GCATGC 2 cut(s) 871, 1013
Sse9I AATT 3 cut(s) 64, 119, 571
SspMI CTAG 2 cut(s) 737, 1062
SstI GAGCTC 1 cut(s) 381
StyD4I CCNGG 4 cut(s) 112, 165, 264, 462
StyI CCWWGG 2 cut(s) 746, 973
TaaI ACNGT 4 cut(s) 107, 185, 806, 1074
TaiI ACGT 2 cut(s) 858, 1029
TaqI TCGA 1 cut(s) 604
TasI AATT 3 cut(s) 64, 119, 571
TauI GCSGC 3 cut(s) 477, 494, 599
TfiI GAWTC 3 cut(s) 143, 632, 827
TseFI GTSAC 1 cut(s) 1022
TseI GCWGC 3 cut(s) 427, 650, 978
Tsp45I GTSAC 1 cut(s) 1022
TspDTI ATGAA 2 cut(s) 503, 769
TspGWI ACGGA 2 cut(s) 359, 1056
VneI GTGCAC 1 cut(s) 668
VpaK11BI GGWCC 1 cut(s) 199
XapI RAATTY 1 cut(s) 119
XceI RCATGY 3 cut(s) 288, 871, 1013
XhoI CTCGAG 1 cut(s) 603
XmiI GTMKAC 1 cut(s) 881
XmnI GAANNNNTTC 1 cut(s) 921
XspI CTAG 2 cut(s) 737, 1062
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.