Rh2BG595600

Ninja-family protein AFP3-like

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
Physical Location & Seq
Forward (+)
81747447 .. 81751327
3881 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG595600.1

Sequence Viewer

Length: 1044 bp
ATGGCGAAAACAGAGGAAGGTGGGAACAGAGCAACCCGGCAGCTTTTCTCAATGCCAGTGAGTAATTTTCAGGGAGATCTGTTGAGGAGAATTGTTTCCGGCGACGATTTATCTCAAAAAGTCGTCGTTGACGAGCCGGTGCAAGATTCCGACGACGTTGAGCTCAGCCTGGGGCTGTCGTTGAACGGTCGGTTTGGGATGGACCCGAGAGCCAAGGCGGGGCTGCAACTCAAACGATCGTCTTCAGTCTCCGACTTCTCGCCTGCCGCGAGGACTCCGGTGAGAGAGGAGGAAGCAGCGACGTGTCGTGTACCCCGGCCGTGTATGGTGCCTCTGATGAGGACTTGCTCGCTTCCGACGGAGACAGAGGATGAGTGGAGGAAGAGGAAGGAGCTGCAGAGCTTGAGGAGAATGGAGGCCAAGCGGAAGCGGTCGGAGAAGCAGCAGAGGAGTTATTCGAAGCTGCATAGGGATCGGAGCCGTGAGAATTTCGAGGAGGATAGGCGAGTAGAGGGCGGTTGTCCTCCCCTTCCGCCGCTACCGCCGGCGGAATCTCAGGGGACTATTGGGTCTCAGGGGAGTGGCTCCTCGGGGGTTACCGAGTCTGATGGCCAAGCTGTTCAAGTGGTGCACAAATGCACCGAAGCGAGAAGCGATACCAATATTGAGTCATTGCCAAAGAGTGAAAAGGAACCACTCGTCACCCCGCAGATGAATTCGACTGCTGAAAACTCTGGGCAGTTGAACGGAGGAGTCCCAATGGAAAACCACTGCAACAAATCCACAAATCCTGTCAAGGGAAGCAAGGAGATTGTGAGGAATGTGTTGGAAAATATGCCTTGTGTGTCTACTAAAGGAGATGGTCCAGACGGGAAAAGAATAGAAGGCTTTCTTTACAGGTACAAGAAAGGTGAGGAAGTGAGGATAGTATGCGTTTGTCATGGCAGCTTTCTGACTCCGGCTGAGTTTGTTAAGCACGCTGGTGGTGGTGATGTACAACATCCTCTCAAACATATAGTGGTCAGTCCTACTCCCATTTTGTAA
Functional Annotation
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

347

Amino Acids

38.19

Weight (kDa)

8.32

Isoelectric Point (pI)

66.29

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
EAR PF07897 49 - 85 7.4e-16 Ethylene-responsive binding factor-associated repression
NLS_NINJA_AFP PF16136 112 - 148 9.4e-21 Putative nuclear localisation signal in Ninja/AFP proteins
TDBD PF16135 308 - 341 4.5e-08 Tify domain binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 568
AccB1I GGYRCC 1 cut(s) 328
AccI GTMKAC 1 cut(s) 848
AccII CGCG 1 cut(s) 269
AclWI GGATC 1 cut(s) 480
AcoI YGGCCR 2 cut(s) 317, 610
AcsI RAATTY 2 cut(s) 487, 715
AcuI CTGAAG 1 cut(s) 228
AfaI GTAC 3 cut(s) 312, 902, 996
AfiI CCNNNNNNNGG 2 cut(s) 219, 797
AflIII ACRYGT 1 cut(s) 302
AgsI TTSAA 3 cut(s) 184, 623, 745
AjiI CACGTC 1 cut(s) 303
AjnI CCWGG 1 cut(s) 168
AleI CACNNNNGTG 1 cut(s) 981
AluBI AGCT 7 cut(s) 43, 163, 394, 402, 463, 617, 948
AluI AGCT 7 cut(s) 43, 163, 394, 402, 463, 617, 948
Alw21I GWGCWC 2 cut(s) 165, 633
Alw26I GTCTC 3 cut(s) 253, 356, 576
Alw44I GTGCAC 1 cut(s) 629
AlwI GGATC 1 cut(s) 480
Ama87I CYCGRG 2 cut(s) 205, 589
AoxI GGCC 3 cut(s) 317, 417, 610
ApaLI GTGCAC 1 cut(s) 629
ApeKI GCWGC 7 cut(s) 40, 223, 296, 394, 442, 463, 945
ApoI RAATTY 2 cut(s) 487, 715
Asp700I GAANNNNTTC 2 cut(s) 94, 888
AspS9I GGNCC 2 cut(s) 202, 863
AsuC2I CCSGG 2 cut(s) 37, 316
AsuHPI GGTGA 4 cut(s) 292, 694, 923, 1001
AsuII TTCGAA 1 cut(s) 458
AvaI CYCGRG 2 cut(s) 205, 589
AvaII GGWCC 2 cut(s) 202, 863
BaeGI GKGCMC 1 cut(s) 633
BalI TGGCCA 1 cut(s) 612
BanI GGYRCC 1 cut(s) 328
BanII GRGCYC 1 cut(s) 165
BbsI GAAGAC 1 cut(s) 234
Bbv12I GWGCWC 2 cut(s) 165, 633
BbvI GCAGC 7 cut(s) 52, 210, 308, 381, 450, 454, 957
BccI CCATC 3 cut(s) 193, 602, 854
BceAI ACGGC 2 cut(s) 304, 465
BcgI CGANNNNNNTGC 2 cut(s) 455, 489
BciT130I CCWGG 1 cut(s) 170
BcnI CCSGG 2 cut(s) 37, 316
BcoDI GTCTC 3 cut(s) 253, 356, 576
BfmI CTRYAG 1 cut(s) 395
BglII AGATCT 1 cut(s) 76
BisI GCNGC 9 cut(s) 41, 224, 267, 297, 395, 443, 464, 536, 946
BlpI GCTNAGC 1 cut(s) 164
BlsI GCNGC 9 cut(s) 42, 225, 268, 298, 396, 444, 465, 537, 947
Bme1390I CCNGG 3 cut(s) 37, 170, 316
Bme18I GGWCC 2 cut(s) 202, 863
BmeT110I CYCGRG 2 cut(s) 205, 589
BmgBI CACGTC 1 cut(s) 303
BmgT120I GGNCC 2 cut(s) 202, 863
BmiI GGNNCC 5 cut(s) 204, 330, 479, 586, 693
BmrFI CCNGG 3 cut(s) 37, 170, 316
BpiI GAAGAC 1 cut(s) 234
Bpu1102I GCTNAGC 1 cut(s) 164
Bpu14I TTCGAA 1 cut(s) 458
BpuEI CTTGAG 1 cut(s) 424
BpuMI CCSGG 2 cut(s) 37, 316
BsaI GGTCTC 1 cut(s) 576
BsaJI CCNNGG 4 cut(s) 169, 213, 314, 588
BsaWI WCCGGW 1 cut(s) 277
Bsc4I CCNNNNNNNGG 2 cut(s) 219, 797
Bse118I RCCGGY 2 cut(s) 136, 544
Bse1I ACTGG 1 cut(s) 56
Bse3DI GCAATG 1 cut(s) 671
BseBI CCWGG 1 cut(s) 170
BseDI CCNNGG 4 cut(s) 169, 213, 314, 588
BseGI GGATG 3 cut(s) 204, 376, 1000
BseLI CCNNNNNNNGG 2 cut(s) 219, 797
BseMI GCAATG 1 cut(s) 671
BseMII CTCAG 4 cut(s) 178, 569, 587, 954
BseNI ACTGG 1 cut(s) 56
BseRI GAGGAG 7 cut(s) 100, 302, 421, 463, 509, 577, 765
BseSI GKGCMC 1 cut(s) 633
BseX3I CGGCCG 1 cut(s) 317
BseXI GCAGC 7 cut(s) 52, 210, 308, 381, 450, 454, 957
Bsh1236I CGCG 1 cut(s) 269
Bsh1285I CGRYCG 4 cut(s) 190, 239, 320, 434
BshFI GGCC 3 cut(s) 319, 419, 612
BshNI GGYRCC 1 cut(s) 328
BsiEI CGRYCG 4 cut(s) 190, 239, 320, 434
BsiHKAI GWGCWC 2 cut(s) 165, 633
BsiHKCI CYCGRG 2 cut(s) 205, 589
BsiSI CCGG 7 cut(s) 37, 99, 137, 278, 316, 545, 959
BslFI GGGAC 2 cut(s) 574, 740
BslI CCNNNNNNNGG 2 cut(s) 219, 797
BsmAI GTCTC 3 cut(s) 253, 356, 576
BsmFI GGGAC 2 cut(s) 574, 740
BsnI GGCC 3 cut(s) 319, 419, 612
Bso31I GGTCTC 1 cut(s) 576
BsoBI CYCGRG 2 cut(s) 205, 589
Bsp119I TTCGAA 1 cut(s) 458
Bsp1286I GDGCHC 2 cut(s) 165, 633
Bsp1407I TGTACA 1 cut(s) 994
Bsp143I GATC 3 cut(s) 76, 236, 472
Bsp1720I GCTNAGC 1 cut(s) 164
BspANI GGCC 3 cut(s) 319, 419, 612
BspCNI CTCAG 4 cut(s) 177, 568, 586, 955
BspFNI CGCG 1 cut(s) 269
BspLI GGNNCC 5 cut(s) 204, 330, 479, 586, 693
BspMAI CTGCAG 1 cut(s) 399
BspPI GGATC 1 cut(s) 480
BspT104I TTCGAA 1 cut(s) 458
BspT107I GGYRCC 1 cut(s) 328
BspTNI GGTCTC 1 cut(s) 576
BsrDI GCAATG 1 cut(s) 671
BsrFI RCCGGY 2 cut(s) 136, 544
BsrGI TGTACA 1 cut(s) 994
BsrI ACTGG 1 cut(s) 56
BssAI RCCGGY 2 cut(s) 136, 544
BssECI CCNNGG 4 cut(s) 169, 213, 314, 588
BssMI GATC 3 cut(s) 76, 236, 472
BssT1I CCWWGG 1 cut(s) 213
Bst2UI CCWGG 1 cut(s) 170
Bst4CI ACNGT 1 cut(s) 188
Bst6I CTCTTC 1 cut(s) 377
BstAUI TGTACA 1 cut(s) 994
BstBI TTCGAA 1 cut(s) 458
BstC8I GCNNGC 4 cut(s) 264, 350, 546, 978
BstDEI CTNAG 4 cut(s) 164, 555, 573, 963
BstEII GGTNACC 1 cut(s) 595
BstF5I GGATG 3 cut(s) 204, 376, 1000
BstFNI CGCG 1 cut(s) 269
BstKTI GATC 3 cut(s) 79, 239, 475
BstMAI GTCTC 3 cut(s) 253, 356, 576
BstMBI GATC 3 cut(s) 76, 236, 472
BstMCI CGRYCG 4 cut(s) 190, 239, 320, 434
BstMWI GCNNNNNNNGC 1 cut(s) 541
BstNI CCWGG 1 cut(s) 170
BstPI GGTNACC 1 cut(s) 595
BstSCI CCNGG 3 cut(s) 35, 168, 314
BstSFI CTRYAG 1 cut(s) 395
BstSLI GKGCMC 1 cut(s) 633
BstUI CGCG 1 cut(s) 269
BstV1I GCAGC 7 cut(s) 52, 210, 308, 381, 450, 454, 957
BstV2I GAAGAC 1 cut(s) 234
BstX2I RGATCY 1 cut(s) 76
BstYI RGATCY 1 cut(s) 76
BstZI CGGCCG 1 cut(s) 317
BsuRI GGCC 3 cut(s) 319, 419, 612
BtrI CACGTC 1 cut(s) 303
BtsCI GGATG 3 cut(s) 204, 376, 1000
BtsI GCAGTG 1 cut(s) 769
BtsIMutI CAGTG 2 cut(s) 63, 769
Cac8I GCNNGC 4 cut(s) 264, 350, 546, 978
Cfr10I RCCGGY 2 cut(s) 136, 544
Cfr13I GGNCC 2 cut(s) 202, 863
Csp6I GTAC 3 cut(s) 311, 901, 995
CviAII CATG 1 cut(s) 941
CviQI GTAC 3 cut(s) 311, 901, 995
DdeI CTNAG 4 cut(s) 164, 555, 573, 963
DpnI GATC 3 cut(s) 78, 238, 474
DpnII GATC 3 cut(s) 76, 236, 472
DrdI GACNNNNNNGTC 1 cut(s) 568
DseDI GACNNNNNNGTC 1 cut(s) 568
EaeI YGGCCR 2 cut(s) 317, 610
EagI CGGCCG 1 cut(s) 317
Eam1104I CTCTTC 1 cut(s) 377
EarI CTCTTC 1 cut(s) 377
EciI GGCGGA 2 cut(s) 522, 563
Ecl136II GAGCTC 1 cut(s) 163
EclXI CGGCCG 1 cut(s) 317
Eco130I CCWWGG 1 cut(s) 213
Eco24I GRGCYC 1 cut(s) 165
Eco31I GGTCTC 1 cut(s) 576
Eco47I GGWCC 2 cut(s) 202, 863
Eco52I CGGCCG 1 cut(s) 317
Eco53kI GAGCTC 1 cut(s) 163
Eco57I CTGAAG 1 cut(s) 228
Eco88I CYCGRG 2 cut(s) 205, 589
Eco91I GGTNACC 1 cut(s) 595
EcoICRI GAGCTC 1 cut(s) 163
EcoO65I GGTNACC 1 cut(s) 595
EcoRI GAATTC 1 cut(s) 715
EcoRII CCWGG 1 cut(s) 168
EcoT14I CCWWGG 1 cut(s) 213
EcoT38I GRGCYC 1 cut(s) 165
ErhI CCWWGG 1 cut(s) 213
FaeI CATG 1 cut(s) 944
FaiI YATR 7 cut(s) 326, 468, 836, 931, 942, 1014, 1016
FalI AAGNNNNNCTT 2 cut(s) 876, 908
FaqI GGGAC 2 cut(s) 574, 740
FatI CATG 1 cut(s) 940
FauI CCCGC 2 cut(s) 211, 714
FblI GTMKAC 1 cut(s) 848
Fnu4HI GCNGC 9 cut(s) 41, 224, 267, 297, 395, 443, 464, 536, 946
FokI GGATG 3 cut(s) 211, 383, 987
FriOI GRGCYC 1 cut(s) 165
Fsp4HI GCNGC 9 cut(s) 41, 224, 267, 297, 395, 443, 464, 536, 946
GluI GCNGC 9 cut(s) 41, 224, 267, 297, 395, 443, 464, 536, 946
HaeIII GGCC 3 cut(s) 319, 419, 612
HapII CCGG 7 cut(s) 37, 99, 137, 278, 316, 545, 959
Hin1II CATG 1 cut(s) 944
HincII GTYRAC 1 cut(s) 130
HindII GTYRAC 1 cut(s) 130
HinfI GANTC 7 cut(s) 146, 274, 551, 602, 668, 753, 955
HpaII CCGG 7 cut(s) 37, 99, 137, 278, 316, 545, 959
HphI GGTGA 4 cut(s) 292, 694, 923, 1001
Hpy166II GTNNAC 4 cut(s) 130, 311, 631, 849
Hpy188I TCNGA 8 cut(s) 151, 253, 336, 357, 436, 477, 607, 954
Hpy188III TCNNGA 1 cut(s) 866
Hpy8I GTNNAC 4 cut(s) 130, 311, 631, 849
Hpy99I CGWCG 6 cut(s) 107, 128, 155, 158, 304, 361
HpyAV CCTTC 4 cut(s) 11, 382, 539, 878
HpyCH4III ACNGT 1 cut(s) 188
HpyCH4IV ACGT 2 cut(s) 156, 302
HpyCH4V TGCA 7 cut(s) 142, 226, 397, 466, 631, 639, 774
HpyF10VI GCNNNNNNNGC 1 cut(s) 541
HpyF3I CTNAG 4 cut(s) 164, 555, 573, 963
HpySE526I ACGT 2 cut(s) 156, 302
Hsp92II CATG 1 cut(s) 944
KroI GCCGGC 1 cut(s) 544
KroNI GCCGGC 1 cut(s) 546
Kzo9I GATC 3 cut(s) 76, 236, 472
LmnI GCTCC 3 cut(s) 391, 477, 590
Lsp1109I GCAGC 7 cut(s) 52, 210, 308, 381, 450, 454, 957
MaeII ACGT 2 cut(s) 156, 302
MaeIII GTNAC 2 cut(s) 595, 700
MalI GATC 3 cut(s) 78, 238, 474
MboI GATC 3 cut(s) 76, 236, 472
MboII GAAGA 2 cut(s) 234, 394
MflI RGATCY 1 cut(s) 76
MhlI GDGCHC 2 cut(s) 165, 633
MlsI TGGCCA 1 cut(s) 612
MluCI AATT 4 cut(s) 64, 90, 487, 715
MluNI TGGCCA 1 cut(s) 612
MlyI GAGTC 5 cut(s) 268, 611, 677, 762, 949
MmeI TCCRAC 5 cut(s) 174, 276, 380, 414, 807
Mox20I TGGCCA 1 cut(s) 612
MreI CGCCGGCG 1 cut(s) 544
MroNI GCCGGC 1 cut(s) 544
MroXI GAANNNNTTC 2 cut(s) 94, 888
MscI TGGCCA 1 cut(s) 612
MseI TTAA 1 cut(s) 972
MslI CAYNNNNRTG 1 cut(s) 981
Msp20I TGGCCA 1 cut(s) 612
MspI CCGG 7 cut(s) 37, 99, 137, 278, 316, 545, 959
MspR9I CCNGG 3 cut(s) 37, 170, 316
MvaI CCWGG 1 cut(s) 170
MvnI CGCG 1 cut(s) 269
MwoI GCNNNNNNNGC 1 cut(s) 541
NaeI GCCGGC 1 cut(s) 546
NciI CCSGG 2 cut(s) 37, 316
NdeII GATC 3 cut(s) 76, 236, 472
NgoMIV GCCGGC 1 cut(s) 544
NlaIII CATG 1 cut(s) 944
NlaIV GGNNCC 5 cut(s) 204, 330, 479, 586, 693
NmuCI GTSAC 1 cut(s) 700
NspV TTCGAA 1 cut(s) 458
OliI CACNNNNGTG 1 cut(s) 981
PcsI WCGNNNNNNNCGW 2 cut(s) 129, 266
PdiI GCCGGC 1 cut(s) 546
PdmI GAANNNNTTC 2 cut(s) 94, 888
PfeI GAWTC 2 cut(s) 146, 551
PkrI GCNGC 9 cut(s) 42, 225, 268, 298, 396, 444, 465, 537, 947
Ple19I CGATCG 1 cut(s) 239
PleI GAGTC 5 cut(s) 268, 610, 676, 761, 949
PpsI GAGTC 5 cut(s) 268, 610, 676, 761, 949
Psp124BI GAGCTC 1 cut(s) 165
Psp6I CCWGG 1 cut(s) 168
PspEI GGTNACC 1 cut(s) 595
PspGI CCWGG 1 cut(s) 168
PspN4I GGNNCC 5 cut(s) 204, 330, 479, 586, 693
PspPI GGNCC 2 cut(s) 202, 863
PstI CTGCAG 1 cut(s) 399
PsuI RGATCY 1 cut(s) 76
PvuI CGATCG 1 cut(s) 239
RsaI GTAC 3 cut(s) 312, 902, 996
RsaNI GTAC 3 cut(s) 311, 901, 995
RseI CAYNNNNRTG 1 cut(s) 981
SacI GAGCTC 1 cut(s) 165
SaqAI TTAA 1 cut(s) 972
SatI GCNGC 9 cut(s) 41, 224, 267, 297, 395, 443, 464, 536, 946
Sau3AI GATC 3 cut(s) 76, 236, 472
Sau96I GGNCC 2 cut(s) 202, 863
SchI GAGTC 5 cut(s) 268, 611, 677, 762, 949
ScrFI CCNGG 3 cut(s) 37, 170, 316
SduI GDGCHC 2 cut(s) 165, 633
SfcI CTRYAG 1 cut(s) 395
SfuI TTCGAA 1 cut(s) 458
SgrAI CRCCGGYG 1 cut(s) 544
SinI GGWCC 2 cut(s) 202, 863
SmiMI CAYNNNNRTG 1 cut(s) 981
SmlI CTYRAG 1 cut(s) 403
SmoI CTYRAG 1 cut(s) 403
Sse9I AATT 4 cut(s) 64, 90, 487, 715
SspI AATATT 1 cut(s) 664
SstI GAGCTC 1 cut(s) 165
StyD4I CCNGG 3 cut(s) 35, 168, 314
StyI CCWWGG 1 cut(s) 213
TaaI ACNGT 1 cut(s) 188
TaiI ACGT 2 cut(s) 159, 305
TaqI TCGA 3 cut(s) 458, 492, 719
TasI AATT 4 cut(s) 64, 90, 487, 715
TatI WGTACW 1 cut(s) 994
TauI GCSGC 2 cut(s) 269, 538
TfiI GAWTC 2 cut(s) 146, 551
Tru1I TTAA 1 cut(s) 972
Tru9I TTAA 1 cut(s) 972
TscAI CASTG 2 cut(s) 63, 776
TseFI GTSAC 1 cut(s) 700
TseI GCWGC 7 cut(s) 40, 223, 296, 394, 442, 463, 945
Tsp45I GTSAC 1 cut(s) 700
TspDTI ATGAA 1 cut(s) 728
TspGWI ACGGA 2 cut(s) 374, 762
TspRI CASTG 2 cut(s) 63, 776
VneI GTGCAC 1 cut(s) 629
VpaK11BI GGWCC 2 cut(s) 202, 863
XapI RAATTY 2 cut(s) 487, 715
XmiI GTMKAC 1 cut(s) 848
XmnI GAANNNNTTC 2 cut(s) 94, 888
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.