Rw7G004650

Ninja-family protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr7
OG0002373
Physical Location & Seq
Reverse (-)
3870639 .. 3873152
2514 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw7G004650.1

Sequence Viewer

Length: 690 bp
ATGGCGGGCGAAGAGGACCAACACGATCTCGGGCTCTCACTTGGGGGACTTTACCGAGGCAACTCTGGTGGGGCCCGCATGGCACGCGCTGTGTCGGTGGGAGTCAATGTGACTGAGGTTGCGGCGGCGCCGAGTCCCAGGGCGGTTTCTCTGCCGTCGGTTAGGGAGCTGGAGATGATGAGGGTCTCTGAGGTTCAGTTTCTGAGCAGGGCGATGGCTACAAGCCTGAGGTTGACTATTCAGGAGGAAAAGGCTAAGAAAGCTCCGGCAGCGGCGGCCCGGCTGCCTGAAGTGGCCGCTCTGGGATTCCTTACAGGATCTGGACGCTTGGCTGCAACAAGCAACACAGTTAGTTCTGAGCTTAAGTCTGGAGAAGGGAGCTCCAATCAGCCTGTGGTCACCACGACAATGATGGCTAACACAAAAAAGGTGAAGGCTGATGACCCTGAACAAGACAGTGCAGCAAAGAGGGCTAGAGTTTATCATGGCAATGTTGTGAGGCCAATTAGGCGTGAAGGGATGGTTAGAATGCCTTCTGTGAAAACCATTGGGGCTGATGGGAAGAAAGTGGAAGTGCGGATTGTATGTGCTTGCCATGGGACTTTCCAGTCCCCAGCGGAGTTCGTCAAGCATGCCGGTGGCAATGAGGTCGCCAATCCTTTGAAGCAAATCACTGTTTCCCTTGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04062 ko04144 ko04520 ko04530 ko04666 ko04810 ko05100 ko05130 ko05131 ko05132 ko05231 map04062 map04144 map04520 map04530 map04666 map04810 map05100 map05130 map05131 map05132 map05231
Pfam Domains
Protein Families
EAR Jas NINJA_B

Protein Analysis

229

Amino Acids

24.12

Weight (kDa)

9.61

Isoelectric Point (pI)

42.84

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TDBD PF16135 193 - 225 2.8e-07 Tify domain binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 607
AccB1I GGYRCC 1 cut(s) 127
AccBSI CCGCTC 1 cut(s) 299
AccII CGCG 1 cut(s) 87
AclWI GGATC 1 cut(s) 325
AcoI YGGCCR 1 cut(s) 294
AcuI CTGAAG 1 cut(s) 309
AcyI GRCGYC 1 cut(s) 128
AflII CTTAAG 1 cut(s) 362
AgsI TTSAA 1 cut(s) 664
AjnI CCWGG 1 cut(s) 137
AluBI AGCT 4 cut(s) 169, 263, 361, 381
AluI AGCT 4 cut(s) 169, 263, 361, 381
Alw21I GWGCWC 1 cut(s) 383
Alw26I GTCTC 1 cut(s) 190
AlwI GGATC 1 cut(s) 325
AlwNI CAGNNNCTG 2 cut(s) 202, 320
Ama87I CYCGRG 1 cut(s) 29
AoxI GGCC 4 cut(s) 72, 276, 294, 500
ApaI GGGCCC 1 cut(s) 76
ApeKI GCWGC 4 cut(s) 269, 283, 332, 461
Asp700I GAANNNNTTC 1 cut(s) 532
AspLEI GCGC 2 cut(s) 89, 130
AspS9I GGNCC 4 cut(s) 16, 72, 73, 277
AsuC2I CCSGG 1 cut(s) 280
AsuHPI GGTGA 2 cut(s) 391, 442
AvaI CYCGRG 1 cut(s) 29
AvaII GGWCC 1 cut(s) 16
AxyI CCTNAGG 1 cut(s) 227
BaeGI GKGCMC 1 cut(s) 76
BanI GGYRCC 1 cut(s) 127
BanII GRGCYC 3 cut(s) 36, 76, 383
Bbv12I GWGCWC 1 cut(s) 383
BbvI GCAGC 4 cut(s) 270, 281, 319, 473
BccI CCATC 4 cut(s) 208, 406, 514, 551
BceAI ACGGC 1 cut(s) 139
BcgI CGANNNNNNTGC 2 cut(s) 631, 665
BciT130I CCWGG 1 cut(s) 139
BcnI CCSGG 1 cut(s) 280
BcoDI GTCTC 1 cut(s) 190
BfaI CTAG 1 cut(s) 474
BfoI RGCGCY 1 cut(s) 131
BfrI CTTAAG 1 cut(s) 362
BglI GCCNNNNNGGC 2 cut(s) 80, 508
BisI GCNGC 9 cut(s) 123, 126, 270, 273, 276, 284, 297, 333, 462
BlsI GCNGC 9 cut(s) 124, 127, 271, 274, 277, 285, 298, 334, 463
Bme1390I CCNGG 2 cut(s) 139, 280
Bme18I GGWCC 1 cut(s) 16
BmeT110I CYCGRG 1 cut(s) 29
BmgT120I GGNCC 4 cut(s) 16, 72, 73, 277
BmiI GGNNCC 3 cut(s) 73, 74, 129
BmrFI CCNGG 2 cut(s) 139, 280
BpmI CTGGAG 2 cut(s) 191, 390
BpuMI CCSGG 1 cut(s) 280
BsaHI GRCGYC 1 cut(s) 128
BsaI GGTCTC 1 cut(s) 190
BsaJI CCNNGG 4 cut(s) 55, 137, 138, 595
BsaXI ACNNNNNCTCC 2 cut(s) 93, 123
Bse118I RCCGGY 1 cut(s) 635
Bse1I ACTGG 1 cut(s) 607
Bse21I CCTNAGG 1 cut(s) 227
Bse3DI GCAATG 2 cut(s) 496, 649
BseBI CCWGG 1 cut(s) 139
BseDI CCNNGG 4 cut(s) 55, 137, 138, 595
BseGI GGATG 1 cut(s) 525
BseMI GCAATG 2 cut(s) 496, 649
BseMII CTCAG 5 cut(s) 105, 180, 194, 218, 348
BseNI ACTGG 1 cut(s) 607
BseSI GKGCMC 1 cut(s) 76
BseXI GCAGC 4 cut(s) 270, 281, 319, 473
BseYI CCCAGC 1 cut(s) 613
BsgI GTGCAG 1 cut(s) 480
Bsh1236I CGCG 1 cut(s) 87
BshFI GGCC 4 cut(s) 74, 278, 296, 502
BshNI GGYRCC 1 cut(s) 127
BsiHKAI GWGCWC 1 cut(s) 383
BsiHKCI CYCGRG 1 cut(s) 29
BsiSI CCGG 3 cut(s) 266, 280, 636
BslFI GGGAC 4 cut(s) 60, 120, 595, 613
BsmAI GTCTC 1 cut(s) 190
BsmFI GGGAC 4 cut(s) 60, 120, 595, 613
BsmI GAATGC 1 cut(s) 534
BsnI GGCC 4 cut(s) 74, 278, 296, 502
Bso31I GGTCTC 1 cut(s) 190
BsoBI CYCGRG 1 cut(s) 29
Bsp120I GGGCCC 1 cut(s) 72
Bsp1286I GDGCHC 3 cut(s) 36, 76, 383
Bsp143I GATC 2 cut(s) 25, 317
Bsp19I CCATGG 1 cut(s) 595
BspANI GGCC 4 cut(s) 74, 278, 296, 502
BspCNI CTCAG 5 cut(s) 106, 181, 195, 219, 349
BspFNI CGCG 1 cut(s) 87
BspLI GGNNCC 3 cut(s) 73, 74, 129
BspPI GGATC 1 cut(s) 325
BspT107I GGYRCC 1 cut(s) 127
BspTI CTTAAG 1 cut(s) 362
BspTNI GGTCTC 1 cut(s) 190
BsrBI CCGCTC 1 cut(s) 299
BsrDI GCAATG 2 cut(s) 496, 649
BsrFI RCCGGY 1 cut(s) 635
BsrI ACTGG 1 cut(s) 607
BssAI RCCGGY 1 cut(s) 635
BssECI CCNNGG 4 cut(s) 55, 137, 138, 595
BssMI GATC 2 cut(s) 25, 317
BssNI GRCGYC 1 cut(s) 128
BssT1I CCWWGG 1 cut(s) 595
Bst2UI CCWGG 1 cut(s) 139
Bst4CI ACNGT 3 cut(s) 349, 458, 676
Bst6I CTCTTC 1 cut(s) 6
BstACI GRCGYC 1 cut(s) 128
BstAFI CTTAAG 1 cut(s) 362
BstC8I GCNNGC 5 cut(s) 7, 76, 85, 592, 633
BstDEI CTNAG 6 cut(s) 114, 189, 203, 227, 255, 357
BstDSI CCRYGG 1 cut(s) 595
BstEII GGTNACC 1 cut(s) 397
BstF5I GGATG 1 cut(s) 525
BstFNI CGCG 1 cut(s) 87
BstH2I RGCGCY 1 cut(s) 131
BstHHI GCGC 2 cut(s) 89, 130
BstKTI GATC 2 cut(s) 28, 320
BstMAI GTCTC 1 cut(s) 190
BstMBI GATC 2 cut(s) 25, 317
BstMWI GCNNNNNNNGC 7 cut(s) 80, 84, 260, 269, 275, 470, 508
BstNI CCWGG 1 cut(s) 139
BstNSI RCATGY 1 cut(s) 635
BstPI GGTNACC 1 cut(s) 397
BstSCI CCNGG 2 cut(s) 137, 278
BstSLI GKGCMC 1 cut(s) 76
BstUI CGCG 1 cut(s) 87
BstV1I GCAGC 4 cut(s) 270, 281, 319, 473
BstX2I RGATCY 1 cut(s) 317
BstYI RGATCY 1 cut(s) 317
Bsu36I CCTNAGG 1 cut(s) 227
BsuRI GGCC 4 cut(s) 74, 278, 296, 502
BtgI CCRYGG 1 cut(s) 595
BtgZI GCGATG 1 cut(s) 227
BtsCI GGATG 1 cut(s) 525
BtsIMutI CAGTG 2 cut(s) 463, 672
Cac8I GCNNGC 5 cut(s) 7, 76, 85, 592, 633
CaiI CAGNNNCTG 2 cut(s) 202, 320
CfoI GCGC 2 cut(s) 89, 130
Cfr10I RCCGGY 1 cut(s) 635
Cfr13I GGNCC 4 cut(s) 16, 72, 73, 277
CseI GACGC 1 cut(s) 333
CspCI CAANNNNNGTGG 2 cut(s) 49, 84
CviAII CATG 4 cut(s) 79, 485, 596, 632
DdeI CTNAG 6 cut(s) 114, 189, 203, 227, 255, 357
DinI GGCGCC 1 cut(s) 129
DpnI GATC 2 cut(s) 27, 319
DpnII GATC 2 cut(s) 25, 317
DrdI GACNNNNNNGTC 1 cut(s) 607
DseDI GACNNNNNNGTC 1 cut(s) 607
EaeI YGGCCR 1 cut(s) 294
Eam1104I CTCTTC 1 cut(s) 6
EarI CTCTTC 1 cut(s) 6
Ecl136II GAGCTC 1 cut(s) 381
Eco130I CCWWGG 1 cut(s) 595
Eco24I GRGCYC 3 cut(s) 36, 76, 383
Eco31I GGTCTC 1 cut(s) 190
Eco47I GGWCC 1 cut(s) 16
Eco53kI GAGCTC 1 cut(s) 381
Eco57I CTGAAG 1 cut(s) 309
Eco81I CCTNAGG 1 cut(s) 227
Eco88I CYCGRG 1 cut(s) 29
Eco91I GGTNACC 1 cut(s) 397
EcoICRI GAGCTC 1 cut(s) 381
EcoO109I RGGNCCY 1 cut(s) 72
EcoO65I GGTNACC 1 cut(s) 397
EcoRII CCWGG 1 cut(s) 137
EcoT14I CCWWGG 1 cut(s) 595
EcoT38I GRGCYC 3 cut(s) 36, 76, 383
EgeI GGCGCC 1 cut(s) 129
EheI GGCGCC 1 cut(s) 129
ErhI CCWWGG 1 cut(s) 595
FaeI CATG 4 cut(s) 82, 488, 599, 635
FaiI YATR 5 cut(s) 80, 486, 586, 597, 633
FaqI GGGAC 4 cut(s) 60, 120, 595, 613
FatI CATG 4 cut(s) 78, 484, 595, 631
FauI CCCGC 1 cut(s) 83
Fnu4HI GCNGC 9 cut(s) 123, 126, 270, 273, 276, 284, 297, 333, 462
FokI GGATG 1 cut(s) 532
FriOI GRGCYC 3 cut(s) 36, 76, 383
Fsp4HI GCNGC 9 cut(s) 123, 126, 270, 273, 276, 284, 297, 333, 462
FspBI CTAG 1 cut(s) 474
GlaI GCGC 2 cut(s) 88, 129
GluI GCNGC 9 cut(s) 123, 126, 270, 273, 276, 284, 297, 333, 462
GsaI CCCAGC 1 cut(s) 617
GsuI CTGGAG 2 cut(s) 191, 390
HaeII RGCGCY 1 cut(s) 131
HaeIII GGCC 4 cut(s) 74, 278, 296, 502
HapII CCGG 3 cut(s) 266, 280, 636
HgaI GACGC 1 cut(s) 333
HhaI GCGC 2 cut(s) 89, 130
Hin1I GRCGYC 1 cut(s) 128
Hin1II CATG 4 cut(s) 82, 488, 599, 635
Hin6I GCGC 2 cut(s) 87, 128
HinP1I GCGC 2 cut(s) 87, 128
HincII GTYRAC 1 cut(s) 234
HindII GTYRAC 1 cut(s) 234
HinfI GANTC 3 cut(s) 102, 133, 306
HpaII CCGG 3 cut(s) 266, 280, 636
HphI GGTGA 2 cut(s) 391, 442
Hpy166II GTNNAC 1 cut(s) 234
Hpy188I TCNGA 3 cut(s) 190, 204, 358
Hpy188III TCNNGA 3 cut(s) 242, 321, 369
Hpy8I GTNNAC 1 cut(s) 234
Hpy99I CGWCG 1 cut(s) 160
HpyAV CCTTC 4 cut(s) 368, 427, 509, 543
HpyCH4III ACNGT 3 cut(s) 349, 458, 676
HpyCH4V TGCA 2 cut(s) 335, 461
HpyF10VI GCNNNNNNNGC 7 cut(s) 80, 84, 260, 269, 275, 470, 508
HpyF3I CTNAG 6 cut(s) 114, 189, 203, 227, 255, 357
Hsp92I GRCGYC 1 cut(s) 128
Hsp92II CATG 4 cut(s) 82, 488, 599, 635
HspAI GCGC 2 cut(s) 87, 128
KasI GGCGCC 1 cut(s) 127
Kzo9I GATC 2 cut(s) 25, 317
LmnI GCTCC 4 cut(s) 166, 268, 378, 386
Lsp1109I GCAGC 4 cut(s) 270, 281, 319, 473
MaeI CTAG 1 cut(s) 474
MaeIII GTNAC 2 cut(s) 109, 397
MalI GATC 2 cut(s) 27, 319
MbiI CCGCTC 1 cut(s) 299
MboI GATC 2 cut(s) 25, 317
MboII GAAGA 2 cut(s) 23, 574
MflI RGATCY 1 cut(s) 317
MhlI GDGCHC 3 cut(s) 36, 76, 383
MluCI AATT 1 cut(s) 504
Mly113I GGCGCC 1 cut(s) 128
MlyI GAGTC 2 cut(s) 111, 142
MroXI GAANNNNTTC 1 cut(s) 532
MseI TTAA 2 cut(s) 363, 688
MslI CAYNNNNRTG 3 cut(s) 407, 489, 636
MspA1I CMGCKG 2 cut(s) 272, 617
MspCI CTTAAG 1 cut(s) 362
MspI CCGG 3 cut(s) 266, 280, 636
MspR9I CCNGG 2 cut(s) 139, 280
Mva1269I GAATGC 1 cut(s) 534
MvaI CCWGG 1 cut(s) 139
MvnI CGCG 1 cut(s) 87
MwoI GCNNNNNNNGC 7 cut(s) 80, 84, 260, 269, 275, 470, 508
NarI GGCGCC 1 cut(s) 128
NciI CCSGG 1 cut(s) 280
NcoI CCATGG 1 cut(s) 595
NdeII GATC 2 cut(s) 25, 317
NlaIII CATG 4 cut(s) 82, 488, 599, 635
NlaIV GGNNCC 3 cut(s) 73, 74, 129
NmeAIII GCCGAG 1 cut(s) 156
NmuCI GTSAC 2 cut(s) 109, 397
NspI RCATGY 1 cut(s) 635
PaeI GCATGC 1 cut(s) 635
PasI CCCWGGG 1 cut(s) 138
PctI GAATGC 1 cut(s) 534
PdmI GAANNNNTTC 1 cut(s) 532
PfeI GAWTC 1 cut(s) 306
PkrI GCNGC 9 cut(s) 124, 127, 271, 274, 277, 285, 298, 334, 463
PleI GAGTC 2 cut(s) 110, 141
PluTI GGCGCC 1 cut(s) 131
PpsI GAGTC 2 cut(s) 110, 141
Psp124BI GAGCTC 1 cut(s) 383
Psp6I CCWGG 1 cut(s) 137
PspEI GGTNACC 1 cut(s) 397
PspFI CCCAGC 1 cut(s) 613
PspGI CCWGG 1 cut(s) 137
PspN4I GGNNCC 3 cut(s) 73, 74, 129
PspOMI GGGCCC 1 cut(s) 72
PspPI GGNCC 4 cut(s) 16, 72, 73, 277
PstNI CAGNNNCTG 2 cut(s) 202, 320
PsuI RGATCY 1 cut(s) 317
RseI CAYNNNNRTG 3 cut(s) 407, 489, 636
SacI GAGCTC 1 cut(s) 383
SaqAI TTAA 2 cut(s) 363, 688
SatI GCNGC 9 cut(s) 123, 126, 270, 273, 276, 284, 297, 333, 462
Sau3AI GATC 2 cut(s) 25, 317
Sau96I GGNCC 4 cut(s) 16, 72, 73, 277
SchI GAGTC 2 cut(s) 111, 142
ScrFI CCNGG 2 cut(s) 139, 280
SduI GDGCHC 3 cut(s) 36, 76, 383
SetI ASST 9 cut(s) 120, 171, 195, 233, 265, 363, 383, 432, 651
SfoI GGCGCC 1 cut(s) 129
SinI GGWCC 1 cut(s) 16
SmiMI CAYNNNNRTG 3 cut(s) 407, 489, 636
SmlI CTYRAG 1 cut(s) 362
SmoI CTYRAG 1 cut(s) 362
SphI GCATGC 1 cut(s) 635
Sse9I AATT 1 cut(s) 504
SspDI GGCGCC 1 cut(s) 127
SspMI CTAG 1 cut(s) 474
SstI GAGCTC 1 cut(s) 383
StyD4I CCNGG 2 cut(s) 137, 278
StyI CCWWGG 1 cut(s) 595
TaaI ACNGT 3 cut(s) 349, 458, 676
TasI AATT 1 cut(s) 504
TauI GCSGC 5 cut(s) 125, 128, 275, 278, 299
TfiI GAWTC 1 cut(s) 306
Tru1I TTAA 2 cut(s) 363, 688
Tru9I TTAA 2 cut(s) 363, 688
TscAI CASTG 2 cut(s) 463, 679
TseFI GTSAC 2 cut(s) 109, 397
TseI GCWGC 4 cut(s) 269, 283, 332, 461
Tsp45I GTSAC 2 cut(s) 109, 397
TspRI CASTG 2 cut(s) 463, 679
Vha464I CTTAAG 1 cut(s) 362
VpaK11BI GGWCC 1 cut(s) 16
XceI RCATGY 1 cut(s) 635
XcmI CCANNNNNNNNNTGG 2 cut(s) 391, 409
XmnI GAANNNNTTC 1 cut(s) 532
XspI CTAG 1 cut(s) 474
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.