Rh7CG057800

Ninja-family protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0002373
Physical Location & Seq
Reverse (-)
4200995 .. 4204110
3116 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG057800.1

Sequence Viewer

Length: 723 bp
ATGGCGGGCGAAGAGGACCAACACGATCTCGGGCTCTCACTTGGGGGACTTTACAGAGGCAACTCGGGTGGGGCCCGCATGGCACGCGCTGTGTCGGTGGGAGTCAATGTGACTGAGGTTGCGGCGGTGCCGAGTCCCAGGGCGGTTTCTCTGCCGTCGGTTAGGGAGCTGGAGATGATGAGGGTCTCTGAGGTTCAGTTTCTGAGCAGGGCGATGGCTACAAGCCTGAGGTTGACTATTCAGGAGGAAAAGATTAACAAAGCTCCGGCAGCGGCGGCCCGGCTGCCTGAAGTGGCCGCTCTGGGAGTGAATGTGACTGGATCTGGACGCTTGGCTGCAACAAGCAGCACAGTTAGTTCTGAGCTTAAGTCTGGAGAAGGGAGCTCCAATCAGCCTGTGGTCACCACGACAATGATGGCCAACACAAAAAAGGTGAAGGCTGATGACCCTGAACAGGACAGTGCAGCAAAGAGGGCTAGAGTTTATTATCGCAATGTTGTGAGGCCAATTAGGCGTGAAGGGATGATTAGAATGCCTTCTGTGAAAACCATTGGGGCTGATGGGAAGAAAGTGGAAGGGTACCTGTACAAGTATCTTGAAGGAAAAGTGCGGATTGTATGTGCTTGCCATGGGACTTTCCAGTCCCCAGCGGAGTTCGTCAAGCATGCCGGTGGCAATGAGGTCGCCAATCCTTTGAAGCAAATCACTGTTTCCCTTGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04062 ko04144 ko04520 ko04530 ko04666 ko04810 ko05100 ko05130 ko05131 ko05132 ko05231 map04062 map04144 map04520 map04530 map04666 map04810 map05100 map05130 map05131 map05132 map05231
Pfam Domains
Protein Families
EAR Jas NINJA_B

Protein Analysis

240

Amino Acids

25.56

Weight (kDa)

9.56

Isoelectric Point (pI)

42.31

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TDBD PF16135 204 - 236 2.3e-07 Tify domain binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 640
Acc65I GGTACC 1 cut(s) 579
AccB1I GGYRCC 2 cut(s) 127, 579
AccBSI CCGCTC 1 cut(s) 299
AccII CGCG 1 cut(s) 87
AclWI GGATC 1 cut(s) 328
AcoI YGGCCR 2 cut(s) 294, 417
AcuI CTGAAG 1 cut(s) 309
AfaI GTAC 2 cut(s) 581, 587
AfiI CCNNNNNNNGG 1 cut(s) 454
AflII CTTAAG 1 cut(s) 365
AgsI TTSAA 2 cut(s) 599, 697
AjnI CCWGG 1 cut(s) 137
AluBI AGCT 4 cut(s) 169, 263, 364, 384
AluI AGCT 4 cut(s) 169, 263, 364, 384
Alw21I GWGCWC 1 cut(s) 386
Alw26I GTCTC 1 cut(s) 190
AlwI GGATC 1 cut(s) 328
AlwNI CAGNNNCTG 1 cut(s) 202
Ama87I CYCGRG 2 cut(s) 29, 64
AoxI GGCC 5 cut(s) 72, 276, 294, 417, 503
ApaI GGGCCC 1 cut(s) 76
ApeKI GCWGC 5 cut(s) 269, 283, 335, 345, 464
Asp700I GAANNNNTTC 1 cut(s) 535
Asp718I GGTACC 1 cut(s) 579
AspLEI GCGC 1 cut(s) 89
AspS9I GGNCC 4 cut(s) 16, 72, 73, 277
AsuC2I CCSGG 1 cut(s) 280
AsuHPI GGTGA 2 cut(s) 394, 445
AvaI CYCGRG 2 cut(s) 29, 64
AvaII GGWCC 1 cut(s) 16
AxyI CCTNAGG 1 cut(s) 227
BaeGI GKGCMC 1 cut(s) 76
BalI TGGCCA 1 cut(s) 419
BanI GGYRCC 2 cut(s) 127, 579
BanII GRGCYC 3 cut(s) 36, 76, 386
Bbv12I GWGCWC 1 cut(s) 386
BbvI GCAGC 5 cut(s) 270, 281, 322, 357, 476
BccI CCATC 3 cut(s) 208, 409, 554
BceAI ACGGC 1 cut(s) 139
BcgI CGANNNNNNTGC 2 cut(s) 664, 698
BciT130I CCWGG 1 cut(s) 139
BcnI CCSGG 1 cut(s) 280
BcoDI GTCTC 1 cut(s) 190
BfaI CTAG 1 cut(s) 477
BfrI CTTAAG 1 cut(s) 365
BglI GCCNNNNNGGC 2 cut(s) 80, 511
BisI GCNGC 9 cut(s) 123, 270, 273, 276, 284, 297, 336, 346, 465
BlsI GCNGC 9 cut(s) 124, 271, 274, 277, 285, 298, 337, 347, 466
Bme1390I CCNGG 2 cut(s) 139, 280
Bme18I GGWCC 1 cut(s) 16
BmeT110I CYCGRG 2 cut(s) 29, 64
BmgT120I GGNCC 4 cut(s) 16, 72, 73, 277
BmiI GGNNCC 4 cut(s) 73, 74, 129, 581
BmrFI CCNGG 2 cut(s) 139, 280
BpmI CTGGAG 2 cut(s) 191, 393
BpuMI CCSGG 1 cut(s) 280
BsaI GGTCTC 1 cut(s) 190
BsaJI CCNNGG 3 cut(s) 137, 138, 628
BsaXI ACNNNNNCTCC 4 cut(s) 93, 123, 297, 327
Bsc4I CCNNNNNNNGG 1 cut(s) 454
Bse118I RCCGGY 1 cut(s) 668
Bse1I ACTGG 2 cut(s) 322, 640
Bse21I CCTNAGG 1 cut(s) 227
Bse3DI GCAATG 2 cut(s) 499, 682
BseBI CCWGG 1 cut(s) 139
BseDI CCNNGG 3 cut(s) 137, 138, 628
BseGI GGATG 1 cut(s) 528
BseLI CCNNNNNNNGG 1 cut(s) 454
BseMI GCAATG 2 cut(s) 499, 682
BseMII CTCAG 5 cut(s) 105, 180, 194, 218, 351
BseNI ACTGG 2 cut(s) 322, 640
BseSI GKGCMC 1 cut(s) 76
BseXI GCAGC 5 cut(s) 270, 281, 322, 357, 476
BseYI CCCAGC 1 cut(s) 646
BsgI GTGCAG 1 cut(s) 483
Bsh1236I CGCG 1 cut(s) 87
BshFI GGCC 5 cut(s) 74, 278, 296, 419, 505
BshNI GGYRCC 2 cut(s) 127, 579
BsiHKAI GWGCWC 1 cut(s) 386
BsiHKCI CYCGRG 2 cut(s) 29, 64
BsiSI CCGG 3 cut(s) 266, 280, 669
BslFI GGGAC 4 cut(s) 60, 120, 628, 646
BslI CCNNNNNNNGG 1 cut(s) 454
BsmAI GTCTC 1 cut(s) 190
BsmFI GGGAC 4 cut(s) 60, 120, 628, 646
BsmI GAATGC 1 cut(s) 537
BsnI GGCC 5 cut(s) 74, 278, 296, 419, 505
Bso31I GGTCTC 1 cut(s) 190
BsoBI CYCGRG 2 cut(s) 29, 64
Bsp120I GGGCCC 1 cut(s) 72
Bsp1286I GDGCHC 3 cut(s) 36, 76, 386
Bsp1407I TGTACA 1 cut(s) 585
Bsp143I GATC 2 cut(s) 25, 320
Bsp19I CCATGG 1 cut(s) 628
BspANI GGCC 5 cut(s) 74, 278, 296, 419, 505
BspCNI CTCAG 5 cut(s) 106, 181, 195, 219, 352
BspFNI CGCG 1 cut(s) 87
BspLI GGNNCC 4 cut(s) 73, 74, 129, 581
BspPI GGATC 1 cut(s) 328
BspT107I GGYRCC 2 cut(s) 127, 579
BspTI CTTAAG 1 cut(s) 365
BspTNI GGTCTC 1 cut(s) 190
BsrBI CCGCTC 1 cut(s) 299
BsrDI GCAATG 2 cut(s) 499, 682
BsrFI RCCGGY 1 cut(s) 668
BsrGI TGTACA 1 cut(s) 585
BsrI ACTGG 2 cut(s) 322, 640
BssAI RCCGGY 1 cut(s) 668
BssECI CCNNGG 3 cut(s) 137, 138, 628
BssMI GATC 2 cut(s) 25, 320
BssT1I CCWWGG 1 cut(s) 628
Bst2UI CCWGG 1 cut(s) 139
Bst4CI ACNGT 3 cut(s) 352, 461, 709
Bst6I CTCTTC 1 cut(s) 6
BstAFI CTTAAG 1 cut(s) 365
BstAUI TGTACA 1 cut(s) 585
BstC8I GCNNGC 5 cut(s) 7, 76, 85, 625, 666
BstDEI CTNAG 5 cut(s) 114, 189, 203, 227, 360
BstDSI CCRYGG 1 cut(s) 628
BstEII GGTNACC 1 cut(s) 400
BstF5I GGATG 1 cut(s) 528
BstFNI CGCG 1 cut(s) 87
BstHHI GCGC 1 cut(s) 89
BstKTI GATC 2 cut(s) 28, 323
BstMAI GTCTC 1 cut(s) 190
BstMBI GATC 2 cut(s) 25, 320
BstMWI GCNNNNNNNGC 6 cut(s) 80, 84, 269, 275, 473, 511
BstNI CCWGG 1 cut(s) 139
BstNSI RCATGY 1 cut(s) 668
BstPI GGTNACC 1 cut(s) 400
BstSCI CCNGG 2 cut(s) 137, 278
BstSLI GKGCMC 1 cut(s) 76
BstUI CGCG 1 cut(s) 87
BstV1I GCAGC 5 cut(s) 270, 281, 322, 357, 476
BstX2I RGATCY 1 cut(s) 320
BstYI RGATCY 1 cut(s) 320
Bsu36I CCTNAGG 1 cut(s) 227
BsuRI GGCC 5 cut(s) 74, 278, 296, 419, 505
BtgI CCRYGG 1 cut(s) 628
BtgZI GCGATG 1 cut(s) 227
BtsCI GGATG 1 cut(s) 528
BtsIMutI CAGTG 2 cut(s) 466, 705
Cac8I GCNNGC 5 cut(s) 7, 76, 85, 625, 666
CaiI CAGNNNCTG 1 cut(s) 202
CfoI GCGC 1 cut(s) 89
Cfr10I RCCGGY 1 cut(s) 668
Cfr13I GGNCC 4 cut(s) 16, 72, 73, 277
CseI GACGC 1 cut(s) 336
Csp6I GTAC 2 cut(s) 580, 586
CspCI CAANNNNNGTGG 2 cut(s) 49, 84
CviAII CATG 3 cut(s) 79, 629, 665
CviQI GTAC 2 cut(s) 580, 586
DdeI CTNAG 5 cut(s) 114, 189, 203, 227, 360
DpnI GATC 2 cut(s) 27, 322
DpnII GATC 2 cut(s) 25, 320
DrdI GACNNNNNNGTC 1 cut(s) 640
DseDI GACNNNNNNGTC 1 cut(s) 640
EaeI YGGCCR 2 cut(s) 294, 417
Eam1104I CTCTTC 1 cut(s) 6
EarI CTCTTC 1 cut(s) 6
Ecl136II GAGCTC 1 cut(s) 384
Eco130I CCWWGG 1 cut(s) 628
Eco24I GRGCYC 3 cut(s) 36, 76, 386
Eco31I GGTCTC 1 cut(s) 190
Eco47I GGWCC 1 cut(s) 16
Eco53kI GAGCTC 1 cut(s) 384
Eco57I CTGAAG 1 cut(s) 309
Eco81I CCTNAGG 1 cut(s) 227
Eco88I CYCGRG 2 cut(s) 29, 64
Eco91I GGTNACC 1 cut(s) 400
EcoICRI GAGCTC 1 cut(s) 384
EcoO109I RGGNCCY 1 cut(s) 72
EcoO65I GGTNACC 1 cut(s) 400
EcoRII CCWGG 1 cut(s) 137
EcoT14I CCWWGG 1 cut(s) 628
EcoT38I GRGCYC 3 cut(s) 36, 76, 386
ErhI CCWWGG 1 cut(s) 628
FaeI CATG 3 cut(s) 82, 632, 668
FaiI YATR 4 cut(s) 80, 619, 630, 666
FaqI GGGAC 4 cut(s) 60, 120, 628, 646
FatI CATG 3 cut(s) 78, 628, 664
FauI CCCGC 1 cut(s) 83
Fnu4HI GCNGC 9 cut(s) 123, 270, 273, 276, 284, 297, 336, 346, 465
FokI GGATG 1 cut(s) 535
FriOI GRGCYC 3 cut(s) 36, 76, 386
Fsp4HI GCNGC 9 cut(s) 123, 270, 273, 276, 284, 297, 336, 346, 465
FspBI CTAG 1 cut(s) 477
GlaI GCGC 1 cut(s) 88
GluI GCNGC 9 cut(s) 123, 270, 273, 276, 284, 297, 336, 346, 465
GsaI CCCAGC 1 cut(s) 650
GsuI CTGGAG 2 cut(s) 191, 393
HaeIII GGCC 5 cut(s) 74, 278, 296, 419, 505
HapII CCGG 3 cut(s) 266, 280, 669
HgaI GACGC 1 cut(s) 336
HhaI GCGC 1 cut(s) 89
Hin1II CATG 3 cut(s) 82, 632, 668
Hin6I GCGC 1 cut(s) 87
HinP1I GCGC 1 cut(s) 87
HincII GTYRAC 1 cut(s) 234
HindII GTYRAC 1 cut(s) 234
HinfI GANTC 2 cut(s) 102, 133
HpaII CCGG 3 cut(s) 266, 280, 669
HphI GGTGA 2 cut(s) 394, 445
Hpy166II GTNNAC 1 cut(s) 234
Hpy188I TCNGA 3 cut(s) 190, 204, 361
Hpy188III TCNNGA 4 cut(s) 242, 324, 372, 596
Hpy8I GTNNAC 1 cut(s) 234
Hpy99I CGWCG 1 cut(s) 160
HpyAV CCTTC 6 cut(s) 371, 430, 512, 546, 569, 593
HpyCH4III ACNGT 3 cut(s) 352, 461, 709
HpyCH4V TGCA 2 cut(s) 338, 464
HpyF10VI GCNNNNNNNGC 6 cut(s) 80, 84, 269, 275, 473, 511
HpyF3I CTNAG 5 cut(s) 114, 189, 203, 227, 360
Hsp92II CATG 3 cut(s) 82, 632, 668
HspAI GCGC 1 cut(s) 87
KpnI GGTACC 1 cut(s) 583
Kzo9I GATC 2 cut(s) 25, 320
LmnI GCTCC 4 cut(s) 166, 268, 381, 389
Lsp1109I GCAGC 5 cut(s) 270, 281, 322, 357, 476
MaeI CTAG 1 cut(s) 477
MaeIII GTNAC 3 cut(s) 109, 313, 400
MalI GATC 2 cut(s) 27, 322
MbiI CCGCTC 1 cut(s) 299
MboI GATC 2 cut(s) 25, 320
MboII GAAGA 2 cut(s) 23, 577
MflI RGATCY 1 cut(s) 320
MhlI GDGCHC 3 cut(s) 36, 76, 386
MlsI TGGCCA 1 cut(s) 419
MluCI AATT 1 cut(s) 507
MluNI TGGCCA 1 cut(s) 419
MlyI GAGTC 2 cut(s) 111, 142
Mox20I TGGCCA 1 cut(s) 419
MroXI GAANNNNTTC 1 cut(s) 535
MscI TGGCCA 1 cut(s) 419
MseI TTAA 3 cut(s) 255, 366, 721
MslI CAYNNNNRTG 2 cut(s) 410, 669
Msp20I TGGCCA 1 cut(s) 419
MspA1I CMGCKG 2 cut(s) 272, 650
MspCI CTTAAG 1 cut(s) 365
MspI CCGG 3 cut(s) 266, 280, 669
MspR9I CCNGG 2 cut(s) 139, 280
Mva1269I GAATGC 1 cut(s) 537
MvaI CCWGG 1 cut(s) 139
MvnI CGCG 1 cut(s) 87
MwoI GCNNNNNNNGC 6 cut(s) 80, 84, 269, 275, 473, 511
NciI CCSGG 1 cut(s) 280
NcoI CCATGG 1 cut(s) 628
NdeII GATC 2 cut(s) 25, 320
NlaIII CATG 3 cut(s) 82, 632, 668
NlaIV GGNNCC 4 cut(s) 73, 74, 129, 581
NmeAIII GCCGAG 1 cut(s) 156
NmuCI GTSAC 3 cut(s) 109, 313, 400
NspI RCATGY 1 cut(s) 668
PaeI GCATGC 1 cut(s) 668
PasI CCCWGGG 1 cut(s) 138
PctI GAATGC 1 cut(s) 537
PdmI GAANNNNTTC 1 cut(s) 535
PkrI GCNGC 9 cut(s) 124, 271, 274, 277, 285, 298, 337, 347, 466
PleI GAGTC 2 cut(s) 110, 141
PpsI GAGTC 2 cut(s) 110, 141
Psp124BI GAGCTC 1 cut(s) 386
Psp6I CCWGG 1 cut(s) 137
PspEI GGTNACC 1 cut(s) 400
PspFI CCCAGC 1 cut(s) 646
PspGI CCWGG 1 cut(s) 137
PspN4I GGNNCC 4 cut(s) 73, 74, 129, 581
PspOMI GGGCCC 1 cut(s) 72
PspPI GGNCC 4 cut(s) 16, 72, 73, 277
PstNI CAGNNNCTG 1 cut(s) 202
PsuI RGATCY 1 cut(s) 320
RsaI GTAC 2 cut(s) 581, 587
RsaNI GTAC 2 cut(s) 580, 586
RseI CAYNNNNRTG 2 cut(s) 410, 669
SacI GAGCTC 1 cut(s) 386
SaqAI TTAA 3 cut(s) 255, 366, 721
SatI GCNGC 9 cut(s) 123, 270, 273, 276, 284, 297, 336, 346, 465
Sau3AI GATC 2 cut(s) 25, 320
Sau96I GGNCC 4 cut(s) 16, 72, 73, 277
SchI GAGTC 2 cut(s) 111, 142
ScrFI CCNGG 2 cut(s) 139, 280
SduI GDGCHC 3 cut(s) 36, 76, 386
SinI GGWCC 1 cut(s) 16
SmiMI CAYNNNNRTG 2 cut(s) 410, 669
SmlI CTYRAG 1 cut(s) 365
SmoI CTYRAG 1 cut(s) 365
SphI GCATGC 1 cut(s) 668
Sse9I AATT 1 cut(s) 507
SspMI CTAG 1 cut(s) 477
SstI GAGCTC 1 cut(s) 386
StyD4I CCNGG 2 cut(s) 137, 278
StyI CCWWGG 1 cut(s) 628
TaaI ACNGT 3 cut(s) 352, 461, 709
TasI AATT 1 cut(s) 507
TatI WGTACW 1 cut(s) 585
TauI GCSGC 4 cut(s) 125, 275, 278, 299
Tru1I TTAA 3 cut(s) 255, 366, 721
Tru9I TTAA 3 cut(s) 255, 366, 721
TscAI CASTG 2 cut(s) 466, 712
TseFI GTSAC 3 cut(s) 109, 313, 400
TseI GCWGC 5 cut(s) 269, 283, 335, 345, 464
Tsp45I GTSAC 3 cut(s) 109, 313, 400
TspRI CASTG 2 cut(s) 466, 712
Vha464I CTTAAG 1 cut(s) 365
VpaK11BI GGWCC 1 cut(s) 16
XceI RCATGY 1 cut(s) 668
XcmI CCANNNNNNNNNTGG 2 cut(s) 394, 412
XmnI GAANNNNTTC 1 cut(s) 535
XspI CTAG 1 cut(s) 477
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.