Rh2AG583500

Ninja-family protein AFP3-like

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
Physical Location & Seq
Forward (+)
81685695 .. 81689078
3384 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG583500.1

Sequence Viewer

Length: 1056 bp
ATGGCCAAAACAGAGGAAGCTGGAAACAGAGCAACCCGGCAGCTTTTCTCATTGCCAGTGAGTAATTTTCAGGGAGATCTATTGAGGAGAATTGTTTCCGGCGACGATTTATCTCGAAAAGTCGTCGTTGACGAGCCGGTGCAAGATTCCGACGACGTTGAGCTGAGCCTGGGGCTGTCGTTGAACGGTCGGTTTGGGATGGACCCGAGAGCCAAGGCGGGGCTGCAACTCAAGCGATCGTCTTCAGTCTCCGACTTCTCGCCTGCCGCGAGCACTCCGGTGAGAGAGGAGGAAGCAGCGACGTGTCGTGTACCCCGGCCGTGTATGGTGCCTCTGATGAGGACTTGCTCGCTTCCGACGGAGACAGAGGATGAGTGGAGGAAGAGGAAGGAGCTGCAGAGCTTGAGGAGAATGGAGGCGAAGCGGAAGCGGTCGGAGAAGCAGCAGAGGAGTTATTCGAAGCTGCATAGGGATCGGAGCCGTGAGAATTTCGAGGAGGATAGGCGAGTGGAGGCCATCAATGGCGGCGGTTGTCCTCCCCTTCCGCCGCTACCGCCGGCGGAATCTCAGGGGACTATTGGGTCTCAGGGGAGTGGCTCCTCGGGGGTTACCGAGTCTGATGGCCAAGCTGTTCAAGTGGTGCCCAAATGCACCGAAGCGAGAAGCGATACCAATATTGAGTCATTGCCAAAGAGTGAAAAGGAACCACTCGTCACCCTGCAGATGAATTCTACTGTTGAAAACTCTGGGCAGTTGAACGGAGGGGTCCCAATGGAAAACCACTGCAACAAATCCACAAGTCCTGCCAAGGGTGCCAAGGAGATTGTGAGGAATGTGTTGGAAAATATGCCTTGTGTGTCTACTAAAGGAGATGGTCCAGACGGGAAAAGAATAGAAGGCTTTCTTTACAGGTACAAGAAAGGTGAGGAAGTGAGGATAGTATGCGTTTGTCATGGCAGCTTTCTGACTCCGGCTGAGTTTGTTAAGCATGCTGGTGGTGGTGATGTGCAACATCCTCTCAAACATATAGTGGTCAGTCCTGCTCCCATTTTGTAA
Functional Annotation
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

351

Amino Acids

38.4

Weight (kDa)

8.32

Isoelectric Point (pI)

67.47

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
EAR PF07897 49 - 85 7.5e-16 Ethylene-responsive binding factor-associated repression
NLS_NINJA_AFP PF16136 112 - 148 9.6e-21 Putative nuclear localisation signal in Ninja/AFP proteins
TDBD PF16135 312 - 344 5.1e-08 Tify domain binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 580
AccB1I GGYRCC 3 cut(s) 328, 640, 812
AccI GTMKAC 1 cut(s) 860
AccII CGCG 1 cut(s) 269
AclWI GGATC 1 cut(s) 480
AcoI YGGCCR 3 cut(s) 3, 317, 622
AcsI RAATTY 2 cut(s) 487, 727
AcuI CTGAAG 1 cut(s) 228
AfaI GTAC 2 cut(s) 312, 914
AfiI CCNNNNNNNGG 2 cut(s) 219, 809
AflIII ACRYGT 1 cut(s) 302
AgsI TTSAA 4 cut(s) 184, 635, 740, 757
AjiI CACGTC 1 cut(s) 303
AjnI CCWGG 1 cut(s) 168
AleI CACNNNNGTG 1 cut(s) 278
AluBI AGCT 8 cut(s) 20, 43, 163, 394, 402, 463, 629, 960
AluI AGCT 8 cut(s) 20, 43, 163, 394, 402, 463, 629, 960
Alw21I GWGCWC 1 cut(s) 275
Alw26I GTCTC 3 cut(s) 253, 356, 588
AlwI GGATC 1 cut(s) 480
Ama87I CYCGRG 2 cut(s) 205, 601
AoxI GGCC 4 cut(s) 3, 317, 513, 622
ApeKI GCWGC 7 cut(s) 40, 223, 296, 394, 442, 463, 957
ApoI RAATTY 2 cut(s) 487, 727
Asp700I GAANNNNTTC 2 cut(s) 94, 900
AspS9I GGNCC 3 cut(s) 202, 766, 875
AsuC2I CCSGG 2 cut(s) 37, 316
AsuHPI GGTGA 4 cut(s) 292, 706, 935, 1013
AsuII TTCGAA 1 cut(s) 458
AvaI CYCGRG 2 cut(s) 205, 601
AvaII GGWCC 3 cut(s) 202, 766, 875
BaeGI GKGCMC 1 cut(s) 645
BalI TGGCCA 2 cut(s) 5, 624
BanI GGYRCC 3 cut(s) 328, 640, 812
BbsI GAAGAC 1 cut(s) 234
Bbv12I GWGCWC 1 cut(s) 275
BbvI GCAGC 7 cut(s) 52, 210, 308, 381, 450, 454, 969
BccI CCATC 4 cut(s) 193, 524, 614, 866
BceAI ACGGC 2 cut(s) 304, 465
BcgI CGANNNNNNTGC 2 cut(s) 455, 489
BciT130I CCWGG 1 cut(s) 170
BcnI CCSGG 2 cut(s) 37, 316
BcoDI GTCTC 3 cut(s) 253, 356, 588
BfmI CTRYAG 2 cut(s) 395, 719
BglII AGATCT 1 cut(s) 76
BlpI GCTNAGC 1 cut(s) 164
Bme1390I CCNGG 3 cut(s) 37, 170, 316
Bme18I GGWCC 3 cut(s) 202, 766, 875
BmeT110I CYCGRG 2 cut(s) 205, 601
BmgBI CACGTC 1 cut(s) 303
BmgT120I GGNCC 3 cut(s) 202, 766, 875
BmiI GGNNCC 9 cut(s) 204, 330, 479, 598, 642, 705, 767, 768, 814
BmrFI CCNGG 3 cut(s) 37, 170, 316
BpiI GAAGAC 1 cut(s) 234
Bpu1102I GCTNAGC 1 cut(s) 164
Bpu14I TTCGAA 1 cut(s) 458
BpuEI CTTGAG 2 cut(s) 215, 424
BpuMI CCSGG 2 cut(s) 37, 316
BsaI GGTCTC 1 cut(s) 588
BsaJI CCNNGG 6 cut(s) 169, 213, 314, 600, 807, 816
BsaWI WCCGGW 1 cut(s) 277
Bsc4I CCNNNNNNNGG 2 cut(s) 219, 809
Bse118I RCCGGY 2 cut(s) 136, 556
Bse1I ACTGG 1 cut(s) 56
Bse3DI GCAATG 2 cut(s) 50, 683
BseBI CCWGG 1 cut(s) 170
BseDI CCNNGG 6 cut(s) 169, 213, 314, 600, 807, 816
BseGI GGATG 3 cut(s) 204, 376, 1012
BseLI CCNNNNNNNGG 2 cut(s) 219, 809
BseMI GCAATG 2 cut(s) 50, 683
BseMII CTCAG 4 cut(s) 155, 581, 599, 966
BseNI ACTGG 1 cut(s) 56
BseRI GAGGAG 6 cut(s) 100, 302, 421, 463, 509, 589
BseSI GKGCMC 1 cut(s) 645
BseX3I CGGCCG 1 cut(s) 317
BseXI GCAGC 7 cut(s) 52, 210, 308, 381, 450, 454, 969
Bsh1236I CGCG 1 cut(s) 269
Bsh1285I CGRYCG 4 cut(s) 190, 239, 320, 434
BshFI GGCC 4 cut(s) 5, 319, 515, 624
BshNI GGYRCC 3 cut(s) 328, 640, 812
BsiEI CGRYCG 4 cut(s) 190, 239, 320, 434
BsiHKAI GWGCWC 1 cut(s) 275
BsiHKCI CYCGRG 2 cut(s) 205, 601
BsiSI CCGG 7 cut(s) 37, 99, 137, 278, 316, 557, 971
BslFI GGGAC 2 cut(s) 586, 752
BslI CCNNNNNNNGG 2 cut(s) 219, 809
BsmAI GTCTC 3 cut(s) 253, 356, 588
BsmFI GGGAC 2 cut(s) 586, 752
BsnI GGCC 4 cut(s) 5, 319, 515, 624
Bso31I GGTCTC 1 cut(s) 588
BsoBI CYCGRG 2 cut(s) 205, 601
Bsp119I TTCGAA 1 cut(s) 458
Bsp1286I GDGCHC 2 cut(s) 275, 645
Bsp143I GATC 3 cut(s) 76, 236, 472
Bsp1720I GCTNAGC 1 cut(s) 164
BspANI GGCC 4 cut(s) 5, 319, 515, 624
BspCNI CTCAG 4 cut(s) 156, 580, 598, 967
BspFNI CGCG 1 cut(s) 269
BspLI GGNNCC 9 cut(s) 204, 330, 479, 598, 642, 705, 767, 768, 814
BspMAI CTGCAG 2 cut(s) 399, 723
BspPI GGATC 1 cut(s) 480
BspT104I TTCGAA 1 cut(s) 458
BspT107I GGYRCC 3 cut(s) 328, 640, 812
BspTNI GGTCTC 1 cut(s) 588
BsrDI GCAATG 2 cut(s) 50, 683
BsrFI RCCGGY 2 cut(s) 136, 556
BsrI ACTGG 1 cut(s) 56
BssAI RCCGGY 2 cut(s) 136, 556
BssECI CCNNGG 6 cut(s) 169, 213, 314, 600, 807, 816
BssMI GATC 3 cut(s) 76, 236, 472
BssT1I CCWWGG 3 cut(s) 213, 807, 816
Bst2UI CCWGG 1 cut(s) 170
Bst4CI ACNGT 2 cut(s) 188, 736
Bst6I CTCTTC 1 cut(s) 377
BstBI TTCGAA 1 cut(s) 458
BstC8I GCNNGC 5 cut(s) 264, 271, 350, 558, 990
BstDEI CTNAG 4 cut(s) 164, 567, 585, 975
BstEII GGTNACC 1 cut(s) 607
BstF5I GGATG 3 cut(s) 204, 376, 1012
BstFNI CGCG 1 cut(s) 269
BstKTI GATC 3 cut(s) 79, 239, 475
BstMAI GTCTC 3 cut(s) 253, 356, 588
BstMBI GATC 3 cut(s) 76, 236, 472
BstMCI CGRYCG 4 cut(s) 190, 239, 320, 434
BstMWI GCNNNNNNNGC 3 cut(s) 232, 553, 812
BstNI CCWGG 1 cut(s) 170
BstNSI RCATGY 1 cut(s) 992
BstPI GGTNACC 1 cut(s) 607
BstSCI CCNGG 3 cut(s) 35, 168, 314
BstSFI CTRYAG 2 cut(s) 395, 719
BstSLI GKGCMC 1 cut(s) 645
BstUI CGCG 1 cut(s) 269
BstV1I GCAGC 7 cut(s) 52, 210, 308, 381, 450, 454, 969
BstV2I GAAGAC 1 cut(s) 234
BstX2I RGATCY 1 cut(s) 76
BstYI RGATCY 1 cut(s) 76
BstZI CGGCCG 1 cut(s) 317
BsuRI GGCC 4 cut(s) 5, 319, 515, 624
BtrI CACGTC 1 cut(s) 303
BtsCI GGATG 3 cut(s) 204, 376, 1012
BtsI GCAGTG 1 cut(s) 781
BtsIMutI CAGTG 2 cut(s) 63, 781
Cac8I GCNNGC 5 cut(s) 264, 271, 350, 558, 990
Cfr10I RCCGGY 2 cut(s) 136, 556
Cfr13I GGNCC 3 cut(s) 202, 766, 875
Csp6I GTAC 2 cut(s) 311, 913
CviAII CATG 2 cut(s) 953, 989
CviQI GTAC 2 cut(s) 311, 913
DdeI CTNAG 4 cut(s) 164, 567, 585, 975
DpnI GATC 3 cut(s) 78, 238, 474
DpnII GATC 3 cut(s) 76, 236, 472
DrdI GACNNNNNNGTC 1 cut(s) 580
DseDI GACNNNNNNGTC 1 cut(s) 580
EaeI YGGCCR 3 cut(s) 3, 317, 622
EagI CGGCCG 1 cut(s) 317
Eam1104I CTCTTC 1 cut(s) 377
EarI CTCTTC 1 cut(s) 377
EciI GGCGGA 2 cut(s) 534, 575
EclXI CGGCCG 1 cut(s) 317
Eco130I CCWWGG 3 cut(s) 213, 807, 816
Eco31I GGTCTC 1 cut(s) 588
Eco47I GGWCC 3 cut(s) 202, 766, 875
Eco52I CGGCCG 1 cut(s) 317
Eco57I CTGAAG 1 cut(s) 228
Eco88I CYCGRG 2 cut(s) 205, 601
Eco91I GGTNACC 1 cut(s) 607
EcoO109I RGGNCCY 1 cut(s) 766
EcoO65I GGTNACC 1 cut(s) 607
EcoRI GAATTC 1 cut(s) 727
EcoRII CCWGG 1 cut(s) 168
EcoT14I CCWWGG 3 cut(s) 213, 807, 816
ErhI CCWWGG 3 cut(s) 213, 807, 816
FaeI CATG 2 cut(s) 956, 992
FaiI YATR 8 cut(s) 326, 468, 848, 943, 954, 990, 1026, 1028
FalI AAGNNNNNCTT 2 cut(s) 888, 920
FaqI GGGAC 2 cut(s) 586, 752
FatI CATG 2 cut(s) 952, 988
FauI CCCGC 1 cut(s) 211
FblI GTMKAC 1 cut(s) 860
FokI GGATG 3 cut(s) 211, 383, 999
HaeIII GGCC 4 cut(s) 5, 319, 515, 624
HapII CCGG 7 cut(s) 37, 99, 137, 278, 316, 557, 971
Hin1II CATG 2 cut(s) 956, 992
HincII GTYRAC 1 cut(s) 130
HindII GTYRAC 1 cut(s) 130
HinfI GANTC 5 cut(s) 146, 563, 614, 680, 967
HpaII CCGG 7 cut(s) 37, 99, 137, 278, 316, 557, 971
HphI GGTGA 4 cut(s) 292, 706, 935, 1013
Hpy166II GTNNAC 3 cut(s) 130, 311, 861
Hpy188I TCNGA 8 cut(s) 151, 253, 336, 357, 436, 477, 619, 966
Hpy188III TCNNGA 2 cut(s) 114, 878
Hpy8I GTNNAC 3 cut(s) 130, 311, 861
Hpy99I CGWCG 6 cut(s) 107, 128, 155, 158, 304, 361
HpyAV CCTTC 3 cut(s) 382, 551, 890
HpyCH4III ACNGT 2 cut(s) 188, 736
HpyCH4IV ACGT 2 cut(s) 156, 302
HpyCH4V TGCA 8 cut(s) 142, 226, 397, 466, 651, 721, 786, 1009
HpyF10VI GCNNNNNNNGC 3 cut(s) 232, 553, 812
HpyF3I CTNAG 4 cut(s) 164, 567, 585, 975
HpySE526I ACGT 2 cut(s) 156, 302
Hsp92II CATG 2 cut(s) 956, 992
KflI GGGWCCC 1 cut(s) 766
KroI GCCGGC 1 cut(s) 556
KroNI GCCGGC 1 cut(s) 558
Kzo9I GATC 3 cut(s) 76, 236, 472
LmnI GCTCC 4 cut(s) 391, 477, 602, 1048
Lsp1109I GCAGC 7 cut(s) 52, 210, 308, 381, 450, 454, 969
MaeII ACGT 2 cut(s) 156, 302
MaeIII GTNAC 2 cut(s) 607, 712
MalI GATC 3 cut(s) 78, 238, 474
MboI GATC 3 cut(s) 76, 236, 472
MboII GAAGA 2 cut(s) 234, 394
MflI RGATCY 1 cut(s) 76
MhlI GDGCHC 2 cut(s) 275, 645
MlsI TGGCCA 2 cut(s) 5, 624
MluCI AATT 4 cut(s) 64, 90, 487, 727
MluNI TGGCCA 2 cut(s) 5, 624
MlyI GAGTC 3 cut(s) 623, 689, 961
MmeI TCCRAC 5 cut(s) 174, 276, 380, 414, 819
Mox20I TGGCCA 2 cut(s) 5, 624
MreI CGCCGGCG 1 cut(s) 556
MroNI GCCGGC 1 cut(s) 556
MroXI GAANNNNTTC 2 cut(s) 94, 900
MscI TGGCCA 2 cut(s) 5, 624
MseI TTAA 1 cut(s) 984
MslI CAYNNNNRTG 2 cut(s) 278, 993
Msp20I TGGCCA 2 cut(s) 5, 624
MspI CCGG 7 cut(s) 37, 99, 137, 278, 316, 557, 971
MspR9I CCNGG 3 cut(s) 37, 170, 316
MvaI CCWGG 1 cut(s) 170
MvnI CGCG 1 cut(s) 269
MwoI GCNNNNNNNGC 3 cut(s) 232, 553, 812
NaeI GCCGGC 1 cut(s) 558
NciI CCSGG 2 cut(s) 37, 316
NdeII GATC 3 cut(s) 76, 236, 472
NgoMIV GCCGGC 1 cut(s) 556
NlaIII CATG 2 cut(s) 956, 992
NlaIV GGNNCC 9 cut(s) 204, 330, 479, 598, 642, 705, 767, 768, 814
NmuCI GTSAC 1 cut(s) 712
NspI RCATGY 1 cut(s) 992
NspV TTCGAA 1 cut(s) 458
OliI CACNNNNGTG 1 cut(s) 278
PaeI GCATGC 1 cut(s) 992
PcsI WCGNNNNNNNCGW 2 cut(s) 129, 266
PdiI GCCGGC 1 cut(s) 558
PdmI GAANNNNTTC 2 cut(s) 94, 900
PfeI GAWTC 2 cut(s) 146, 563
Ple19I CGATCG 1 cut(s) 239
PleI GAGTC 3 cut(s) 622, 688, 961
PpsI GAGTC 3 cut(s) 622, 688, 961
PpuMI RGGWCCY 1 cut(s) 766
Psp5II RGGWCCY 1 cut(s) 766
Psp6I CCWGG 1 cut(s) 168
PspEI GGTNACC 1 cut(s) 607
PspGI CCWGG 1 cut(s) 168
PspN4I GGNNCC 9 cut(s) 204, 330, 479, 598, 642, 705, 767, 768, 814
PspPI GGNCC 3 cut(s) 202, 766, 875
PspPPI RGGWCCY 1 cut(s) 766
PstI CTGCAG 2 cut(s) 399, 723
PsuI RGATCY 1 cut(s) 76
PvuI CGATCG 1 cut(s) 239
RsaI GTAC 2 cut(s) 312, 914
RsaNI GTAC 2 cut(s) 311, 913
RseI CAYNNNNRTG 2 cut(s) 278, 993
SaqAI TTAA 1 cut(s) 984
Sau3AI GATC 3 cut(s) 76, 236, 472
Sau96I GGNCC 3 cut(s) 202, 766, 875
SchI GAGTC 3 cut(s) 623, 689, 961
ScrFI CCNGG 3 cut(s) 37, 170, 316
SduI GDGCHC 2 cut(s) 275, 645
SfcI CTRYAG 2 cut(s) 395, 719
SfuI TTCGAA 1 cut(s) 458
SgrAI CRCCGGYG 1 cut(s) 556
SinI GGWCC 3 cut(s) 202, 766, 875
SmiMI CAYNNNNRTG 2 cut(s) 278, 993
SmlI CTYRAG 2 cut(s) 230, 403
SmoI CTYRAG 2 cut(s) 230, 403
SphI GCATGC 1 cut(s) 992
Sse9I AATT 4 cut(s) 64, 90, 487, 727
SspI AATATT 1 cut(s) 676
StyD4I CCNGG 3 cut(s) 35, 168, 314
StyI CCWWGG 3 cut(s) 213, 807, 816
TaaI ACNGT 2 cut(s) 188, 736
TaiI ACGT 2 cut(s) 159, 305
TaqI TCGA 3 cut(s) 115, 458, 492
TasI AATT 4 cut(s) 64, 90, 487, 727
TauI GCSGC 3 cut(s) 269, 528, 550
TfiI GAWTC 2 cut(s) 146, 563
Tru1I TTAA 1 cut(s) 984
Tru9I TTAA 1 cut(s) 984
TscAI CASTG 2 cut(s) 63, 788
TseFI GTSAC 1 cut(s) 712
TseI GCWGC 7 cut(s) 40, 223, 296, 394, 442, 463, 957
Tsp45I GTSAC 1 cut(s) 712
TspDTI ATGAA 1 cut(s) 740
TspGWI ACGGA 2 cut(s) 374, 774
TspRI CASTG 2 cut(s) 63, 788
VpaK11BI GGWCC 3 cut(s) 202, 766, 875
XapI RAATTY 2 cut(s) 487, 727
XceI RCATGY 1 cut(s) 992
XmiI GTMKAC 1 cut(s) 860
XmnI GAANNNNTTC 2 cut(s) 94, 900
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.