Ninja-family protein
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G29575 AT3G29575 AT3G29575 |
| fragaria_vesca | FvH4_5g13760 FvH4_6g46820 FvH4_6g46820 |
| malus_domestica | MD09G1067200.v1.1 MD17G1060200.v1.1 |
| prunus_persica | Prupe.5G205900_v2.0.a1 Prupe.5G205900_v2.0.a1 Prupe.5G205900_v2.0.a1 Prupe.5G205900_v2.0.a1 |
| pyrus_communis | pycom06g18020 pycom111g05650 pycom13g23090 pycom17g05990 |
| rosa_chinensis | RchiOBHm_Chr2g0165801 RchiOBHm_Chr7g0183181 |
| rosa_laevigata | RLG00000005069 RLG00000021557 |
| rosa_multiflora | Rmu_co8279591.1_g000001 Rmu_co8332333.1_g000001 Rmu_sc0001861.1_g000014 Rmu_sc0003227.1_g000009 Rmu_sc0006832.1_g000002 Rmu_sc0012318.1_g000002 Rmu_ssc0000111.1_g000018 |
| rosa_roxburghii | Rroxscaffold_2G00085490 Rroxscaffold_3G00270680 |
| rosa_rugosa | Rorug02G0517800 Rorug06G0454600 |
| rosa_samantha | Rh2AG583500 Rh2BG595600 Rh2CG221700 Rh2CG566300 Rh2DG605400 Rh7AG057000 Rh7BG056700 Rh7CG057800 Rh7DG056600 |
| rosa_wichuraiana | Rw2G048660 Rw7G004650 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccIII | TCCGGA | 1 cut(s) | 253 |
| AciI | CCGC | 4 cut(s) | 271, 410, 491, 626 |
| AcoI | YGGCCR | 1 cut(s) | 570 |
| AcsI | RAATTY | 1 cut(s) | 797 |
| AcuI | CTGAAG | 2 cut(s) | 207, 435 |
| AcyI | GRCGYC | 1 cut(s) | 188 |
| AfaI | GTAC | 1 cut(s) | 731 |
| AflIII | ACRYGT | 1 cut(s) | 583 |
| AgsI | TTSAA | 3 cut(s) | 156, 498, 564 |
| AjnI | CCWGG | 3 cut(s) | 21, 90, 747 |
| AluBI | AGCT | 5 cut(s) | 232, 246, 340, 359, 664 |
| AluI | AGCT | 5 cut(s) | 232, 246, 340, 359, 664 |
| Alw21I | GWGCWC | 1 cut(s) | 443 |
| Alw26I | GTCTC | 1 cut(s) | 512 |
| Aor13HI | TCCGGA | 1 cut(s) | 253 |
| AoxI | GGCC | 3 cut(s) | 431, 570, 745 |
| ApaI | GGGCCC | 1 cut(s) | 435 |
| ApeKI | GCWGC | 7 cut(s) | 209, 229, 232, 268, 359, 392, 406 |
| ApoI | RAATTY | 1 cut(s) | 797 |
| AspS9I | GGNCC | 3 cut(s) | 76, 431, 432 |
| AsuC2I | CCSGG | 1 cut(s) | 430 |
| AsuHPI | GGTGA | 1 cut(s) | 547 |
| AsuII | TTCGAA | 1 cut(s) | 456 |
| AvaII | GGWCC | 1 cut(s) | 76 |
| AxyI | CCTNAGG | 1 cut(s) | 839 |
| BaeGI | GKGCMC | 1 cut(s) | 435 |
| BalI | TGGCCA | 1 cut(s) | 572 |
| BanII | GRGCYC | 2 cut(s) | 99, 435 |
| BbsI | GAAGAC | 3 cut(s) | 144, 383, 719 |
| Bbv12I | GWGCWC | 1 cut(s) | 443 |
| BbvCI | CCTCAGC | 2 cut(s) | 6, 341 |
| BbvI | GCAGC | 7 cut(s) | 196, 219, 241, 280, 346, 404, 418 |
| BccI | CCATC | 2 cut(s) | 154, 698 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 384, 418 |
| BciT130I | CCWGG | 3 cut(s) | 23, 92, 749 |
| BcnI | CCSGG | 1 cut(s) | 430 |
| BcoDI | GTCTC | 1 cut(s) | 512 |
| BfaI | CTAG | 2 cut(s) | 381, 630 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 753 |
| Bme1390I | CCNGG | 4 cut(s) | 23, 92, 430, 749 |
| Bme18I | GGWCC | 1 cut(s) | 76 |
| BmgT120I | GGNCC | 3 cut(s) | 76, 431, 432 |
| BmiI | GGNNCC | 2 cut(s) | 78, 433 |
| BmrFI | CCNGG | 4 cut(s) | 23, 92, 430, 749 |
| BmsI | GCATC | 1 cut(s) | 410 |
| BpiI | GAAGAC | 3 cut(s) | 144, 383, 719 |
| Bpu10I | CCTNAGC | 2 cut(s) | 6, 341 |
| Bpu14I | TTCGAA | 1 cut(s) | 456 |
| BpuEI | CTTGAG | 1 cut(s) | 457 |
| BpuMI | CCSGG | 1 cut(s) | 430 |
| BsaHI | GRCGYC | 1 cut(s) | 188 |
| BsaJI | CCNNGG | 5 cut(s) | 91, 236, 606, 717, 772 |
| BsaWI | WCCGGW | 2 cut(s) | 253, 530 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 370, 400 |
| Bse118I | RCCGGY | 1 cut(s) | 547 |
| Bse1I | ACTGG | 1 cut(s) | 300 |
| Bse21I | CCTNAGG | 1 cut(s) | 839 |
| BseAI | TCCGGA | 1 cut(s) | 253 |
| BseBI | CCWGG | 3 cut(s) | 23, 92, 749 |
| BseDI | CCNNGG | 5 cut(s) | 91, 236, 606, 717, 772 |
| BseGI | GGATG | 3 cut(s) | 279, 515, 668 |
| BseMII | CTCAG | 2 cut(s) | 332, 830 |
| BseNI | ACTGG | 1 cut(s) | 300 |
| BseRI | GAGGAG | 3 cut(s) | 204, 209, 674 |
| BseSI | GKGCMC | 1 cut(s) | 435 |
| BseXI | GCAGC | 7 cut(s) | 196, 219, 241, 280, 346, 404, 418 |
| BseYI | CCCAGC | 1 cut(s) | 790 |
| BsgI | GTGCAG | 2 cut(s) | 248, 579 |
| BshFI | GGCC | 3 cut(s) | 433, 572, 747 |
| BsiHKAI | GWGCWC | 1 cut(s) | 443 |
| BsiSI | CCGG | 6 cut(s) | 191, 254, 389, 429, 531, 548 |
| BsmAI | GTCTC | 1 cut(s) | 512 |
| BsnI | GGCC | 3 cut(s) | 433, 572, 747 |
| Bsp119I | TTCGAA | 1 cut(s) | 456 |
| Bsp120I | GGGCCC | 1 cut(s) | 431 |
| Bsp1286I | GDGCHC | 3 cut(s) | 99, 435, 443 |
| Bsp13I | TCCGGA | 1 cut(s) | 253 |
| Bsp1407I | TGTACA | 1 cut(s) | 729 |
| Bsp19I | CCATGG | 2 cut(s) | 606, 772 |
| BspACI | CCGC | 4 cut(s) | 271, 410, 491, 626 |
| BspANI | GGCC | 3 cut(s) | 433, 572, 747 |
| BspCNI | CTCAG | 2 cut(s) | 333, 831 |
| BspEI | TCCGGA | 1 cut(s) | 253 |
| BspLI | GGNNCC | 2 cut(s) | 78, 433 |
| BspT104I | TTCGAA | 1 cut(s) | 456 |
| BsrFI | RCCGGY | 1 cut(s) | 547 |
| BsrGI | TGTACA | 1 cut(s) | 729 |
| BsrI | ACTGG | 1 cut(s) | 300 |
| BssAI | RCCGGY | 1 cut(s) | 547 |
| BssECI | CCNNGG | 5 cut(s) | 91, 236, 606, 717, 772 |
| BssNI | GRCGYC | 1 cut(s) | 188 |
| BssT1I | CCWWGG | 3 cut(s) | 236, 606, 772 |
| Bst2UI | CCWGG | 3 cut(s) | 23, 92, 749 |
| Bst4CI | ACNGT | 2 cut(s) | 445, 484 |
| Bst6I | CTCTTC | 3 cut(s) | 222, 317, 565 |
| BstACI | GRCGYC | 1 cut(s) | 188 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 602 |
| BstAUI | TGTACA | 1 cut(s) | 729 |
| BstBI | TTCGAA | 1 cut(s) | 456 |
| BstC8I | GCNNGC | 2 cut(s) | 769, 810 |
| BstDEI | CTNAG | 3 cut(s) | 6, 341, 839 |
| BstDSI | CCRYGG | 2 cut(s) | 606, 772 |
| BstEII | GGTNACC | 1 cut(s) | 553 |
| BstF5I | GGATG | 3 cut(s) | 279, 515, 668 |
| BstMAI | GTCTC | 1 cut(s) | 512 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 398, 602, 753 |
| BstNI | CCWGG | 3 cut(s) | 23, 92, 749 |
| BstNSI | RCATGY | 2 cut(s) | 587, 812 |
| BstPI | GGTNACC | 1 cut(s) | 553 |
| BstSCI | CCNGG | 4 cut(s) | 21, 90, 428, 747 |
| BstSLI | GKGCMC | 1 cut(s) | 435 |
| BstV1I | GCAGC | 7 cut(s) | 196, 219, 241, 280, 346, 404, 418 |
| BstV2I | GAAGAC | 3 cut(s) | 144, 383, 719 |
| Bsu36I | CCTNAGG | 1 cut(s) | 839 |
| BsuRI | GGCC | 3 cut(s) | 433, 572, 747 |
| BtgI | CCRYGG | 2 cut(s) | 606, 772 |
| BtgZI | GCGATG | 1 cut(s) | 387 |
| BtsCI | GGATG | 3 cut(s) | 279, 515, 668 |
| BtsIMutI | CAGTG | 3 cut(s) | 117, 231, 480 |
| Cac8I | GCNNGC | 2 cut(s) | 769, 810 |
| Cfr10I | RCCGGY | 1 cut(s) | 547 |
| Cfr13I | GGNCC | 3 cut(s) | 76, 431, 432 |
| CseI | GACGC | 1 cut(s) | 196 |
| CsiI | ACCWGGT | 1 cut(s) | 21 |
| Csp6I | GTAC | 1 cut(s) | 730 |
| CviAII | CATG | 6 cut(s) | 49, 584, 607, 773, 809, 867 |
| CviQI | GTAC | 1 cut(s) | 730 |
| DdeI | CTNAG | 3 cut(s) | 6, 341, 839 |
| EaeI | YGGCCR | 1 cut(s) | 570 |
| Eam1104I | CTCTTC | 3 cut(s) | 222, 317, 565 |
| EarI | CTCTTC | 3 cut(s) | 222, 317, 565 |
| Eco130I | CCWWGG | 3 cut(s) | 236, 606, 772 |
| Eco24I | GRGCYC | 2 cut(s) | 99, 435 |
| Eco47I | GGWCC | 1 cut(s) | 76 |
| Eco57I | CTGAAG | 2 cut(s) | 207, 435 |
| Eco81I | CCTNAGG | 1 cut(s) | 839 |
| Eco91I | GGTNACC | 1 cut(s) | 553 |
| EcoO109I | RGGNCCY | 1 cut(s) | 432 |
| EcoO65I | GGTNACC | 1 cut(s) | 553 |
| EcoRII | CCWGG | 3 cut(s) | 21, 90, 747 |
| EcoT14I | CCWWGG | 3 cut(s) | 236, 606, 772 |
| EcoT38I | GRGCYC | 2 cut(s) | 99, 435 |
| ErhI | CCWWGG | 3 cut(s) | 236, 606, 772 |
| FaeI | CATG | 6 cut(s) | 52, 587, 610, 776, 812, 870 |
| FatI | CATG | 6 cut(s) | 48, 583, 606, 772, 808, 866 |
| FokI | GGATG | 3 cut(s) | 286, 522, 655 |
| FriOI | GRGCYC | 2 cut(s) | 99, 435 |
| FspBI | CTAG | 2 cut(s) | 381, 630 |
| GsaI | CCCAGC | 1 cut(s) | 794 |
| HaeIII | GGCC | 3 cut(s) | 433, 572, 747 |
| HapII | CCGG | 6 cut(s) | 191, 254, 389, 429, 531, 548 |
| HgaI | GACGC | 1 cut(s) | 196 |
| Hin1I | GRCGYC | 1 cut(s) | 188 |
| Hin1II | CATG | 6 cut(s) | 52, 587, 610, 776, 812, 870 |
| HincII | GTYRAC | 1 cut(s) | 589 |
| HindII | GTYRAC | 1 cut(s) | 589 |
| HinfI | GANTC | 2 cut(s) | 68, 168 |
| HpaII | CCGG | 6 cut(s) | 191, 254, 389, 429, 531, 548 |
| HphI | GGTGA | 1 cut(s) | 547 |
| Hpy166II | GTNNAC | 2 cut(s) | 76, 589 |
| Hpy188I | TCNGA | 1 cut(s) | 698 |
| Hpy188III | TCNNGA | 1 cut(s) | 254 |
| Hpy8I | GTNNAC | 2 cut(s) | 76, 589 |
| Hpy99I | CGWCG | 1 cut(s) | 190 |
| HpyAV | CCTTC | 5 cut(s) | 231, 537, 649, 690, 703 |
| HpyCH4III | ACNGT | 2 cut(s) | 445, 484 |
| HpyCH4V | TGCA | 3 cut(s) | 52, 229, 596 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 398, 602, 753 |
| HpyF3I | CTNAG | 3 cut(s) | 6, 341, 839 |
| Hsp92I | GRCGYC | 1 cut(s) | 188 |
| Hsp92II | CATG | 6 cut(s) | 52, 587, 610, 776, 812, 870 |
| Kpn2I | TCCGGA | 1 cut(s) | 253 |
| LmnI | GCTCC | 4 cut(s) | 217, 503, 661, 698 |
| Lsp1109I | GCAGC | 7 cut(s) | 196, 219, 241, 280, 346, 404, 418 |
| LweI | GCATC | 1 cut(s) | 410 |
| MabI | ACCWGGT | 1 cut(s) | 21 |
| MaeI | CTAG | 2 cut(s) | 381, 630 |
| MaeIII | GTNAC | 2 cut(s) | 536, 553 |
| MboII | GAAGA | 8 cut(s) | 144, 209, 318, 334, 362, 388, 552, 724 |
| MhlI | GDGCHC | 3 cut(s) | 99, 435, 443 |
| MlsI | TGGCCA | 1 cut(s) | 572 |
| MluCI | AATT | 2 cut(s) | 353, 797 |
| MluNI | TGGCCA | 1 cut(s) | 572 |
| Mox20I | TGGCCA | 1 cut(s) | 572 |
| MroI | TCCGGA | 1 cut(s) | 253 |
| MscI | TGGCCA | 1 cut(s) | 572 |
| MseI | TTAA | 2 cut(s) | 173, 450 |
| MslI | CAYNNNNRTG | 1 cut(s) | 813 |
| Msp20I | TGGCCA | 1 cut(s) | 572 |
| MspA1I | CMGCKG | 2 cut(s) | 232, 271 |
| MspI | CCGG | 6 cut(s) | 191, 254, 389, 429, 531, 548 |
| MspR9I | CCNGG | 4 cut(s) | 23, 92, 430, 749 |
| MvaI | CCWGG | 3 cut(s) | 23, 92, 749 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 398, 602, 753 |
| NciI | CCSGG | 1 cut(s) | 430 |
| NcoI | CCATGG | 2 cut(s) | 606, 772 |
| NlaIII | CATG | 6 cut(s) | 52, 587, 610, 776, 812, 870 |
| NlaIV | GGNNCC | 2 cut(s) | 78, 433 |
| NmuCI | GTSAC | 2 cut(s) | 536, 553 |
| NspI | RCATGY | 2 cut(s) | 587, 812 |
| NspV | TTCGAA | 1 cut(s) | 456 |
| PaeI | GCATGC | 1 cut(s) | 812 |
| PciI | ACATGT | 1 cut(s) | 583 |
| PfeI | GAWTC | 2 cut(s) | 68, 168 |
| PscI | ACATGT | 1 cut(s) | 583 |
| Psp6I | CCWGG | 3 cut(s) | 21, 90, 747 |
| PspEI | GGTNACC | 1 cut(s) | 553 |
| PspFI | CCCAGC | 1 cut(s) | 790 |
| PspGI | CCWGG | 3 cut(s) | 21, 90, 747 |
| PspN4I | GGNNCC | 2 cut(s) | 78, 433 |
| PspOMI | GGGCCC | 1 cut(s) | 431 |
| PspPI | GGNCC | 3 cut(s) | 76, 431, 432 |
| PvuII | CAGCTG | 1 cut(s) | 232 |
| RsaI | GTAC | 1 cut(s) | 731 |
| RsaNI | GTAC | 1 cut(s) | 730 |
| RseI | CAYNNNNRTG | 1 cut(s) | 813 |
| SaqAI | TTAA | 2 cut(s) | 173, 450 |
| Sau96I | GGNCC | 3 cut(s) | 76, 431, 432 |
| ScrFI | CCNGG | 4 cut(s) | 23, 92, 430, 749 |
| SduI | GDGCHC | 3 cut(s) | 99, 435, 443 |
| SexAI | ACCWGGT | 1 cut(s) | 21 |
| SfaNI | GCATC | 1 cut(s) | 410 |
| SfuI | TTCGAA | 1 cut(s) | 456 |
| SinI | GGWCC | 1 cut(s) | 76 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 813 |
| SmlI | CTYRAG | 1 cut(s) | 436 |
| SmoI | CTYRAG | 1 cut(s) | 436 |
| SphI | GCATGC | 1 cut(s) | 812 |
| Sse9I | AATT | 2 cut(s) | 353, 797 |
| SsiI | CCGC | 4 cut(s) | 271, 410, 491, 626 |
| SspMI | CTAG | 2 cut(s) | 381, 630 |
| StyD4I | CCNGG | 4 cut(s) | 21, 90, 428, 747 |
| StyI | CCWWGG | 3 cut(s) | 236, 606, 772 |
| TaaI | ACNGT | 2 cut(s) | 445, 484 |
| TaqI | TCGA | 1 cut(s) | 456 |
| TaqII | GACCGA | 2 cut(s) | 138, 731 |
| TasI | AATT | 2 cut(s) | 353, 797 |
| TatI | WGTACW | 1 cut(s) | 729 |
| TauI | GCSGC | 3 cut(s) | 412, 494, 629 |
| TfiI | GAWTC | 2 cut(s) | 68, 168 |
| Tru1I | TTAA | 2 cut(s) | 173, 450 |
| Tru9I | TTAA | 2 cut(s) | 173, 450 |
| TscAI | CASTG | 3 cut(s) | 124, 231, 487 |
| TseFI | GTSAC | 2 cut(s) | 536, 553 |
| TseI | GCWGC | 7 cut(s) | 209, 229, 232, 268, 359, 392, 406 |
| Tsp45I | GTSAC | 2 cut(s) | 536, 553 |
| TspDTI | ATGAA | 1 cut(s) | 837 |
| TspGWI | ACGGA | 1 cut(s) | 516 |
| TspRI | CASTG | 3 cut(s) | 124, 231, 487 |
| VpaK11BI | GGWCC | 1 cut(s) | 76 |
| XapI | RAATTY | 1 cut(s) | 797 |
| XceI | RCATGY | 2 cut(s) | 587, 812 |
| XspI | CTAG | 2 cut(s) | 381, 630 |