MD17G1060200.v1.1

Ninja-family protein AFP3-like

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr17
Physical Location & Seq
Reverse (-)
4885629 .. 4888599
2971 bp
Loading structure...
UTR
Exon/CDS
Intron
MD17G1060200.v1.1.491

Sequence Viewer

Length: 1074 bp
ATGGCGCAAACAGAGGAAGGCGGGAACAGAGCAACCCAGCAGGTGTTCCCAATGCAAGTGAGTACTTTTCCGGGCGATTTGTACGGGAAAATGGTTGCCAGGAACGATTTTCCGGGGAATTTCGGGGAGCCAACCGGCGAGGATTCCGAGGAGATTGAGCTGAGCCTCGGGCTGTCTCTGAACGGTCGGTTCGGGGTGGACCCCGCCAGAGCCAAAACGGTGGCGCTGAAACGCTCGTCGTCAATATCTGATTTCGGTTTCACCCCGGCAAGAGAAGAAGAAACGAAGTGTCGTGTGTCCGCGCCGTCGCGGGCGGTGCCTCTGATGAGGACTTGTTCGCTTCCAACGGAGACAGAGGACGAGTGGAGGAAGCGGAAGGAGCTGCAGAGCTTGAGGAGAATGGAGGCGAAGAGGAAGAGGTCGGAGAAGCAGCTGAGGAACTTGAAGGTACCGAGAGATCGGAGCCGAGAGAACGGCGGCGTGGAGGAGAAGACGGGGGAGGTGGCGAATGGGGTTCATAGGAGGGAGCAGTTTGTGAAGGTTGTAGATGAGTTTAGAGCTATGGGGATACCCAATTGTCCTGTTCCGCCGCCACCGGCGGCATCTCAAGGAAGTGGCTCAACTGGGGTTTCTGAATCTGAGAACCAAGTTGCTGCCACGTCTCAAGGAGTGCACACCCAAGCAAGAAGCCATGTCGATTCTCAATCTTCGCCAAAGACAGAGGATGAACTGTTAGCCACCCCAAGAATGATAACCGCTCAAAGATCGGGCCAGTTCAATGGCGTCCAAACGGAAATCAACTGTAATAAACCCCCAGTTCCAGAAAATGGTGCCAACGAAATCATGAGGAATGTGTTGGAGAACATGCCGTGTGTGTCTACGACAGGAGATGGCCCTGACGGGAAAAGAATAGAAGGGTTTCTTTACAGATACAAGAAGGGTGAGGAAGTGAGGATACTGTGCGTTTGCCATGGCAGCTTTCTCTCGCCAGCGGAGTTTGTGAAGCATGCCGGCGGTGGTGACGTGGCGCACCCGTTGAAGCATATAGTGGTGAACCCTAGTCCGTTTTTGTAG
Functional Annotation
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

358

Amino Acids

39.12

Weight (kDa)

7.62

Isoelectric Point (pI)

61.82

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
EAR PF07897 47 - 84 3.5e-17 Ethylene-responsive binding factor-associated repression
NLS_NINJA_AFP PF16136 108 - 144 9.8e-21 Putative nuclear localisation signal in Ninja/AFP proteins
TDBD PF16135 318 - 351 1.6e-08 Tify domain binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 31
Acc36I ACCTGC 1 cut(s) 31
Acc65I GGTACC 1 cut(s) 448
AccB1I GGYRCC 3 cut(s) 316, 448, 830
AccB7I CCANNNNNTGG 1 cut(s) 827
AccBSI CCGCTC 1 cut(s) 758
AccI GTMKAC 1 cut(s) 878
AccII CGCG 2 cut(s) 302, 310
AcsI RAATTY 1 cut(s) 118
AcyI GRCGYC 1 cut(s) 783
AfaI GTAC 3 cut(s) 64, 83, 450
AfiI CCNNNNNNNGG 1 cut(s) 827
AgsI TTSAA 3 cut(s) 445, 778, 1039
AjiI CACGTC 2 cut(s) 660, 1024
AjnI CCWGG 1 cut(s) 98
AluBI AGCT 6 cut(s) 160, 382, 390, 433, 560, 978
AluI AGCT 6 cut(s) 160, 382, 390, 433, 560, 978
Alw21I GWGCWC 1 cut(s) 675
Alw26I GTCTC 3 cut(s) 180, 344, 666
Alw44I GTGCAC 1 cut(s) 671
Ama87I CYCGRG 1 cut(s) 167
AoxI GGCC 2 cut(s) 769, 892
ApaLI GTGCAC 1 cut(s) 671
ApeKI GCWGC 4 cut(s) 382, 430, 653, 975
ApoI RAATTY 1 cut(s) 118
Asp700I GAANNNNTTC 1 cut(s) 918
Asp718I GGTACC 1 cut(s) 448
AspLEI GCGC 4 cut(s) 7, 226, 304, 1030
AspS9I GGNCC 3 cut(s) 199, 769, 893
AsuC2I CCSGG 3 cut(s) 72, 114, 266
AsuHPI GGTGA 4 cut(s) 253, 953, 1031, 1063
AvaI CYCGRG 1 cut(s) 167
AvaII GGWCC 1 cut(s) 199
BaeGI GKGCMC 1 cut(s) 675
BanI GGYRCC 3 cut(s) 316, 448, 830
BarI GAAGNNNNNNTAC 2 cut(s) 939, 971
BbsI GAAGAC 1 cut(s) 497
Bbv12I GWGCWC 1 cut(s) 675
BbvCI CCTCAGC 1 cut(s) 434
BbvI GCAGC 4 cut(s) 369, 442, 640, 987
BccI CCATC 1 cut(s) 884
BceAI ACGGC 3 cut(s) 289, 490, 853
BciT130I CCWGG 1 cut(s) 100
BciVI GTATCC 2 cut(s) 561, 948
BcnI CCSGG 3 cut(s) 72, 114, 266
BcoDI GTCTC 3 cut(s) 180, 344, 666
BfaI CTAG 1 cut(s) 1059
BfmI CTRYAG 1 cut(s) 383
BfoI RGCGCY 1 cut(s) 227
BfuAI ACCTGC 1 cut(s) 31
BfuI GTATCC 2 cut(s) 561, 948
BisI GCNGC 7 cut(s) 383, 431, 478, 590, 600, 654, 976
BlpI GCTNAGC 1 cut(s) 161
BlsI GCNGC 7 cut(s) 384, 432, 479, 591, 601, 655, 977
BmcAI AGTACT 1 cut(s) 64
Bme1390I CCNGG 4 cut(s) 72, 100, 114, 266
Bme18I GGWCC 1 cut(s) 199
BmeT110I CYCGRG 1 cut(s) 167
BmgBI CACGTC 2 cut(s) 660, 1024
BmgT120I GGNCC 3 cut(s) 199, 769, 893
BmiI GGNNCC 6 cut(s) 129, 201, 318, 450, 464, 832
BmrFI CCNGG 4 cut(s) 72, 100, 114, 266
BmrI ACTGGG 2 cut(s) 633, 809
BmsI GCATC 1 cut(s) 611
BmuI ACTGGG 2 cut(s) 633, 809
BpiI GAAGAC 1 cut(s) 497
Bpu10I CCTNAGC 1 cut(s) 434
Bpu1102I GCTNAGC 1 cut(s) 161
BpuEI CTTGAG 3 cut(s) 412, 591, 648
BpuMI CCSGG 3 cut(s) 72, 114, 266
BsaHI GRCGYC 1 cut(s) 783
BsaJI CCNNGG 5 cut(s) 113, 147, 166, 264, 970
Bsc4I CCNNNNNNNGG 1 cut(s) 827
Bse118I RCCGGY 3 cut(s) 134, 595, 1010
Bse1I ACTGG 3 cut(s) 628, 772, 815
BseBI CCWGG 1 cut(s) 100
BseDI CCNNGG 5 cut(s) 113, 147, 166, 264, 970
BseGI GGATG 1 cut(s) 730
BseLI CCNNNNNNNGG 1 cut(s) 827
BseMII CTCAG 3 cut(s) 152, 425, 630
BseNI ACTGG 3 cut(s) 628, 772, 815
BseRI GAGGAG 3 cut(s) 164, 409, 500
BseSI GKGCMC 1 cut(s) 675
BseXI GCAGC 4 cut(s) 369, 442, 640, 987
BseYI CCCAGC 1 cut(s) 36
Bsh1236I CGCG 2 cut(s) 302, 310
Bsh1285I CGRYCG 1 cut(s) 187
BshFI GGCC 2 cut(s) 771, 894
BshNI GGYRCC 3 cut(s) 316, 448, 830
BsiEI CGRYCG 1 cut(s) 187
BsiHKAI GWGCWC 1 cut(s) 675
BsiHKCI CYCGRG 1 cut(s) 167
BsiSI CCGG 6 cut(s) 71, 113, 135, 266, 596, 1011
BslI CCNNNNNNNGG 1 cut(s) 827
BsmAI GTCTC 3 cut(s) 180, 344, 666
BsmBI CGTCTC 1 cut(s) 666
BsnI GGCC 2 cut(s) 771, 894
BsoBI CYCGRG 1 cut(s) 167
Bsp1286I GDGCHC 1 cut(s) 675
Bsp143I GATC 2 cut(s) 457, 764
Bsp1720I GCTNAGC 1 cut(s) 161
Bsp19I CCATGG 1 cut(s) 970
BspANI GGCC 2 cut(s) 771, 894
BspCNI CTCAG 3 cut(s) 153, 426, 631
BspFNI CGCG 2 cut(s) 302, 310
BspHI TCATGA 1 cut(s) 843
BspLI GGNNCC 6 cut(s) 129, 201, 318, 450, 464, 832
BspMAI CTGCAG 1 cut(s) 387
BspMI ACCTGC 1 cut(s) 31
BspT107I GGYRCC 3 cut(s) 316, 448, 830
BsrBI CCGCTC 1 cut(s) 758
BsrFI RCCGGY 3 cut(s) 134, 595, 1010
BsrI ACTGG 3 cut(s) 628, 772, 815
BssAI RCCGGY 3 cut(s) 134, 595, 1010
BssECI CCNNGG 5 cut(s) 113, 147, 166, 264, 970
BssMI GATC 2 cut(s) 457, 764
BssNI GRCGYC 1 cut(s) 783
BssT1I CCWWGG 1 cut(s) 970
Bst2UI CCWGG 1 cut(s) 100
Bst4CI ACNGT 5 cut(s) 185, 220, 732, 803, 960
Bst6I CTCTTC 2 cut(s) 404, 410
BstACI GRCGYC 1 cut(s) 783
BstC8I GCNNGC 4 cut(s) 312, 990, 1008, 1012
BstDEI CTNAG 3 cut(s) 161, 434, 639
BstDSI CCRYGG 1 cut(s) 970
BstF5I GGATG 1 cut(s) 730
BstFNI CGCG 2 cut(s) 302, 310
BstH2I RGCGCY 1 cut(s) 227
BstHHI GCGC 4 cut(s) 7, 226, 304, 1030
BstKTI GATC 2 cut(s) 460, 767
BstMAI GTCTC 3 cut(s) 180, 344, 666
BstMBI GATC 2 cut(s) 457, 764
BstMCI CGRYCG 1 cut(s) 187
BstMWI GCNNNNNNNGC 3 cut(s) 316, 379, 975
BstNI CCWGG 1 cut(s) 100
BstNSI RCATGY 2 cut(s) 868, 1010
BstSCI CCNGG 4 cut(s) 70, 98, 112, 264
BstSFI CTRYAG 1 cut(s) 383
BstSLI GKGCMC 1 cut(s) 675
BstUI CGCG 2 cut(s) 302, 310
BstV1I GCAGC 4 cut(s) 369, 442, 640, 987
BstV2I GAAGAC 1 cut(s) 497
BstXI CCANNNNNNTGG 2 cut(s) 220, 779
BsuI GTATCC 2 cut(s) 561, 948
BsuRI GGCC 2 cut(s) 771, 894
BtgI CCRYGG 1 cut(s) 970
BtrI CACGTC 2 cut(s) 660, 1024
BtsCI GGATG 1 cut(s) 730
BveI ACCTGC 1 cut(s) 31
Cac8I GCNNGC 4 cut(s) 312, 990, 1008, 1012
CciI TCATGA 1 cut(s) 843
CfoI GCGC 4 cut(s) 7, 226, 304, 1030
Cfr10I RCCGGY 3 cut(s) 134, 595, 1010
Cfr13I GGNCC 3 cut(s) 199, 769, 893
CseI GACGC 1 cut(s) 772
Csp6I GTAC 3 cut(s) 63, 82, 449
CviAII CATG 5 cut(s) 692, 844, 865, 971, 1007
CviQI GTAC 3 cut(s) 63, 82, 449
DdeI CTNAG 3 cut(s) 161, 434, 639
DpnI GATC 2 cut(s) 459, 766
DpnII GATC 2 cut(s) 457, 764
Eam1104I CTCTTC 2 cut(s) 404, 410
EarI CTCTTC 2 cut(s) 404, 410
EciI GGCGGA 1 cut(s) 576
Eco130I CCWWGG 1 cut(s) 970
Eco47I GGWCC 1 cut(s) 199
Eco88I CYCGRG 1 cut(s) 167
EcoRII CCWGG 1 cut(s) 98
EcoT14I CCWWGG 1 cut(s) 970
ErhI CCWWGG 1 cut(s) 970
Esp3I CGTCTC 1 cut(s) 666
FaeI CATG 5 cut(s) 695, 847, 868, 974, 1010
FaiI YATR 9 cut(s) 519, 563, 693, 845, 866, 972, 1008, 1044, 1046
FalI AAGNNNNNCTT 2 cut(s) 906, 938
FatI CATG 5 cut(s) 691, 843, 864, 970, 1006
FauI CCCGC 3 cut(s) 14, 211, 303
FblI GTMKAC 1 cut(s) 878
Fnu4HI GCNGC 7 cut(s) 383, 431, 478, 590, 600, 654, 976
FokI GGATG 1 cut(s) 737
Fsp4HI GCNGC 7 cut(s) 383, 431, 478, 590, 600, 654, 976
FspBI CTAG 1 cut(s) 1059
GlaI GCGC 4 cut(s) 6, 225, 303, 1029
GluI GCNGC 7 cut(s) 383, 431, 478, 590, 600, 654, 976
GsaI CCCAGC 1 cut(s) 40
HaeII RGCGCY 1 cut(s) 227
HaeIII GGCC 2 cut(s) 771, 894
HapII CCGG 6 cut(s) 71, 113, 135, 266, 596, 1011
HgaI GACGC 1 cut(s) 772
HhaI GCGC 4 cut(s) 7, 226, 304, 1030
Hin1I GRCGYC 1 cut(s) 783
Hin1II CATG 5 cut(s) 695, 847, 868, 974, 1010
Hin6I GCGC 4 cut(s) 5, 224, 302, 1028
HinP1I GCGC 4 cut(s) 5, 224, 302, 1028
HinfI GANTC 3 cut(s) 143, 635, 698
HpaII CCGG 6 cut(s) 71, 113, 135, 266, 596, 1011
HphI GGTGA 4 cut(s) 253, 953, 1031, 1063
Hpy166II GTNNAC 4 cut(s) 199, 673, 879, 1054
Hpy188I TCNGA 8 cut(s) 148, 180, 250, 324, 424, 462, 634, 640
Hpy188III TCNNGA 2 cut(s) 821, 844
Hpy8I GTNNAC 4 cut(s) 199, 673, 879, 1054
Hpy99I CGWCG 2 cut(s) 241, 310
HpyAV CCTTC 6 cut(s) 11, 370, 439, 532, 908, 931
HpyCH4III ACNGT 5 cut(s) 185, 220, 732, 803, 960
HpyCH4IV ACGT 2 cut(s) 659, 1023
HpyCH4V TGCA 3 cut(s) 55, 385, 673
HpyF10VI GCNNNNNNNGC 3 cut(s) 316, 379, 975
HpyF3I CTNAG 3 cut(s) 161, 434, 639
HpySE526I ACGT 2 cut(s) 659, 1023
Hsp92I GRCGYC 1 cut(s) 783
Hsp92II CATG 5 cut(s) 695, 847, 868, 974, 1010
HspAI GCGC 4 cut(s) 5, 224, 302, 1028
KpnI GGTACC 1 cut(s) 452
KroI GCCGGC 1 cut(s) 1010
KroNI GCCGGC 1 cut(s) 1012
Kzo9I GATC 2 cut(s) 457, 764
LmnI GCTCC 4 cut(s) 127, 379, 462, 526
Lsp1109I GCAGC 4 cut(s) 369, 442, 640, 987
LweI GCATC 1 cut(s) 611
MaeI CTAG 1 cut(s) 1059
MaeII ACGT 2 cut(s) 659, 1023
MaeIII GTNAC 1 cut(s) 1019
MalI GATC 2 cut(s) 459, 766
MbiI CCGCTC 1 cut(s) 758
MboI GATC 2 cut(s) 457, 764
MboII GAAGA 6 cut(s) 287, 290, 421, 427, 502, 699
MfeI CAATTG 1 cut(s) 574
MhlI GDGCHC 1 cut(s) 675
MluCI AATT 2 cut(s) 118, 574
MmeI TCCRAC 3 cut(s) 368, 402, 837
MroNI GCCGGC 1 cut(s) 1010
MroXI GAANNNNTTC 1 cut(s) 918
MspA1I CMGCKG 2 cut(s) 433, 992
MspI CCGG 6 cut(s) 71, 113, 135, 266, 596, 1011
MspR9I CCNGG 4 cut(s) 72, 100, 114, 266
MunI CAATTG 1 cut(s) 574
MvaI CCWGG 1 cut(s) 100
MvnI CGCG 2 cut(s) 302, 310
MwoI GCNNNNNNNGC 3 cut(s) 316, 379, 975
NaeI GCCGGC 1 cut(s) 1012
NciI CCSGG 3 cut(s) 72, 114, 266
NcoI CCATGG 1 cut(s) 970
NdeII GATC 2 cut(s) 457, 764
NgoMIV GCCGGC 1 cut(s) 1010
NlaIII CATG 5 cut(s) 695, 847, 868, 974, 1010
NlaIV GGNNCC 6 cut(s) 129, 201, 318, 450, 464, 832
NmeAIII GCCGAG 1 cut(s) 491
NmuCI GTSAC 1 cut(s) 1019
NspI RCATGY 2 cut(s) 868, 1010
PaeI GCATGC 1 cut(s) 1010
PagI TCATGA 1 cut(s) 843
PaqCI CACCTGC 1 cut(s) 31
PdiI GCCGGC 1 cut(s) 1012
PdmI GAANNNNTTC 1 cut(s) 918
PfeI GAWTC 3 cut(s) 143, 635, 698
PflMI CCANNNNNTGG 1 cut(s) 827
PkrI GCNGC 7 cut(s) 384, 432, 479, 591, 601, 655, 977
Psp6I CCWGG 1 cut(s) 98
PspFI CCCAGC 1 cut(s) 36
PspGI CCWGG 1 cut(s) 98
PspN4I GGNNCC 6 cut(s) 129, 201, 318, 450, 464, 832
PspPI GGNCC 3 cut(s) 199, 769, 893
PstI CTGCAG 1 cut(s) 387
PvuII CAGCTG 1 cut(s) 433
RsaI GTAC 3 cut(s) 64, 83, 450
RsaNI GTAC 3 cut(s) 63, 82, 449
SatI GCNGC 7 cut(s) 383, 431, 478, 590, 600, 654, 976
Sau3AI GATC 2 cut(s) 457, 764
Sau96I GGNCC 3 cut(s) 199, 769, 893
ScaI AGTACT 1 cut(s) 64
ScrFI CCNGG 4 cut(s) 72, 100, 114, 266
SduI GDGCHC 1 cut(s) 675
SfaNI GCATC 1 cut(s) 611
SfcI CTRYAG 1 cut(s) 383
SgrAI CRCCGGYG 1 cut(s) 595
SinI GGWCC 1 cut(s) 199
SmlI CTYRAG 3 cut(s) 391, 606, 663
SmoI CTYRAG 3 cut(s) 391, 606, 663
SphI GCATGC 1 cut(s) 1010
Sse9I AATT 2 cut(s) 118, 574
SspMI CTAG 1 cut(s) 1059
StyD4I CCNGG 4 cut(s) 70, 98, 112, 264
StyI CCWWGG 1 cut(s) 970
TaaI ACNGT 5 cut(s) 185, 220, 732, 803, 960
TaiI ACGT 2 cut(s) 662, 1026
TaqI TCGA 1 cut(s) 696
TasI AATT 2 cut(s) 118, 574
TatI WGTACW 1 cut(s) 62
TauI GCSGC 3 cut(s) 480, 592, 602
TfiI GAWTC 3 cut(s) 143, 635, 698
TseFI GTSAC 1 cut(s) 1019
TseI GCWGC 4 cut(s) 382, 430, 653, 975
Tsp45I GTSAC 1 cut(s) 1019
TspDTI ATGAA 2 cut(s) 506, 741
TspGWI ACGGA 3 cut(s) 362, 806, 1053
Van91I CCANNNNNTGG 1 cut(s) 827
VneI GTGCAC 1 cut(s) 671
VpaK11BI GGWCC 1 cut(s) 199
XapI RAATTY 1 cut(s) 118
XceI RCATGY 2 cut(s) 868, 1010
XmiI GTMKAC 1 cut(s) 878
XmnI GAANNNNTTC 1 cut(s) 918
XspI CTAG 1 cut(s) 1059
ZrmI AGTACT 1 cut(s) 64
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.