Rh2DG605400

Ninja-family protein AFP3-like

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
Physical Location & Seq
Forward (+)
83992351 .. 83994351
2001 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG605400.1

Sequence Viewer

Length: 1059 bp
ATGGCGAAAACAGAGAAAGGTGGGAACAGAGCAACCCGGCAGCTTTTCTCAATGCCAGTGAGTAATTTTCAGGGAGATCTATTGAGGAGAATTGTTTCCGGCGACGATTTATCTCGAAAAGTCGTCGTCGACGAGCCGGTGCAAGATTCCGACGACGTTGAGCTGAGCCTGGGGCTGTCGTTGAACGGTCGGTTTGGGATGGACCCGAGAGCCAAGGCGGGGCTGCAACTCAAACGATCGTCTTCAGTCTCCGACTTCTCGCCTGCCGCGAGGACTCCGGTGAGAGAGGAGGAAGCAGCGACGTGTCGTGCACCCCGGCCGTGTATGGTGCCTCTGATGAGGACTTGCTCGCTTCCGACGGAGACAGAGGATGAGTGGAGGAAGAGGAAGGAGCTGCAGAGCTTGAGGAGAATGGAGGCGAAGCGGAAGCGGTCGGAGAAGCAGCAGAGGAGTTATTCGAAGCTGCATAGGGATCGGAGCCGTGAGAATTTCGAGGAGGATAGGCGACTAGAGGCCGCCATCAATGGCGGCGGTTGTCCTCCTGTTCCGCCGCTACCGCCGGCGGAATCTCAGGGGACTATTGGGTCTCAGGGCAGCGGCTCGTCGGGGGTTACCGAGTCTGATGGCCAAGCTGTTCAAGTGGTGCACAAATGCACTCAAGCGAGAAGCGATACCAATATTGAGTCATTGCCAAAGAGTGAAAAGGAACCACTCGTCACCCCTCAGATGAATTCGACTGCTGAAAACTCTGGGCAGTTGAACAGAGGGGTCCCAATGGAAAACCACTGCAACAAATCCACAAGTCCTGCCAAGGGAACCAAGGAGATTGTGAGGAATGTGTTGGAAAATATGCCTTGTGTGTCTACTAAAGGAGATGGTCCAGACGGGAAAAGAATAGAAGGCTTTCTTTACAGGTACAAGAAAGGTGAGGAAGTGAGGATAGTATGCGTTTGTCATGGTAGCTTTCTGACTCCGGCTGAGTTTGTTAAGCACGCTGGTGGTGGTGATGTGCTACATCCTCTCAAACATATAGTGGTCAGTCCTACTCCCATTTTGTAA
Functional Annotation
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

352

Amino Acids

38.66

Weight (kDa)

9.01

Isoelectric Point (pI)

65.46

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
EAR PF07897 49 - 85 7.6e-16 Ethylene-responsive binding factor-associated repression
NLS_NINJA_AFP PF16136 112 - 148 9.6e-21 Putative nuclear localisation signal in Ninja/AFP proteins
TDBD PF16135 313 - 346 6.8e-08 Tify domain binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 583
AccB1I GGYRCC 1 cut(s) 328
AccI GTMKAC 2 cut(s) 129, 863
AccII CGCG 1 cut(s) 269
AclWI GGATC 1 cut(s) 480
AcoI YGGCCR 2 cut(s) 317, 625
AcsI RAATTY 2 cut(s) 487, 730
AcuI CTGAAG 1 cut(s) 228
AfaI GTAC 1 cut(s) 917
AfiI CCNNNNNNNGG 2 cut(s) 219, 812
AflIII ACRYGT 1 cut(s) 302
AgsI TTSAA 3 cut(s) 184, 638, 760
AjiI CACGTC 1 cut(s) 303
AjnI CCWGG 1 cut(s) 168
AleI CACNNNNGTG 1 cut(s) 996
AluBI AGCT 7 cut(s) 43, 163, 394, 402, 463, 632, 963
AluI AGCT 7 cut(s) 43, 163, 394, 402, 463, 632, 963
Alw21I GWGCWC 2 cut(s) 313, 648
Alw26I GTCTC 3 cut(s) 253, 356, 591
Alw44I GTGCAC 2 cut(s) 309, 644
AlwI GGATC 1 cut(s) 480
Ama87I CYCGRG 1 cut(s) 205
AoxI GGCC 3 cut(s) 317, 513, 625
ApaLI GTGCAC 2 cut(s) 309, 644
ApeKI GCWGC 7 cut(s) 40, 223, 296, 394, 442, 463, 594
ApoI RAATTY 2 cut(s) 487, 730
Asp700I GAANNNNTTC 2 cut(s) 94, 903
AspS9I GGNCC 3 cut(s) 202, 769, 878
AsuC2I CCSGG 2 cut(s) 37, 316
AsuHPI GGTGA 4 cut(s) 292, 709, 938, 1016
AsuII TTCGAA 1 cut(s) 458
AvaI CYCGRG 1 cut(s) 205
AvaII GGWCC 3 cut(s) 202, 769, 878
BaeGI GKGCMC 2 cut(s) 313, 648
BalI TGGCCA 1 cut(s) 627
BanI GGYRCC 1 cut(s) 328
BbsI GAAGAC 1 cut(s) 234
Bbv12I GWGCWC 2 cut(s) 313, 648
BbvI GCAGC 7 cut(s) 52, 210, 308, 381, 450, 454, 606
BccI CCATC 4 cut(s) 193, 527, 617, 869
BceAI ACGGC 2 cut(s) 304, 465
BcgI CGANNNNNNTGC 2 cut(s) 455, 489
BciT130I CCWGG 1 cut(s) 170
BcnI CCSGG 2 cut(s) 37, 316
BcoDI GTCTC 3 cut(s) 253, 356, 591
BfaI CTAG 1 cut(s) 509
BfmI CTRYAG 1 cut(s) 395
BglII AGATCT 1 cut(s) 76
BlpI GCTNAGC 1 cut(s) 164
Bme1390I CCNGG 3 cut(s) 37, 170, 316
Bme18I GGWCC 3 cut(s) 202, 769, 878
BmeT110I CYCGRG 1 cut(s) 205
BmgBI CACGTC 1 cut(s) 303
BmgT120I GGNCC 3 cut(s) 202, 769, 878
BmiI GGNNCC 7 cut(s) 204, 330, 479, 708, 770, 771, 817
BmrFI CCNGG 3 cut(s) 37, 170, 316
BpiI GAAGAC 1 cut(s) 234
Bpu1102I GCTNAGC 1 cut(s) 164
Bpu14I TTCGAA 1 cut(s) 458
BpuEI CTTGAG 2 cut(s) 424, 642
BpuMI CCSGG 2 cut(s) 37, 316
BsaI GGTCTC 1 cut(s) 591
BsaJI CCNNGG 5 cut(s) 169, 213, 314, 810, 819
BsaWI WCCGGW 1 cut(s) 277
Bsc4I CCNNNNNNNGG 2 cut(s) 219, 812
Bse118I RCCGGY 2 cut(s) 136, 559
Bse1I ACTGG 1 cut(s) 56
Bse3DI GCAATG 1 cut(s) 686
BseBI CCWGG 1 cut(s) 170
BseDI CCNNGG 5 cut(s) 169, 213, 314, 810, 819
BseGI GGATG 3 cut(s) 204, 376, 1015
BseLI CCNNNNNNNGG 2 cut(s) 219, 812
BseMI GCAATG 1 cut(s) 686
BseMII CTCAG 5 cut(s) 155, 584, 602, 737, 969
BseNI ACTGG 1 cut(s) 56
BseRI GAGGAG 5 cut(s) 100, 302, 421, 463, 509
BseSI GKGCMC 2 cut(s) 313, 648
BseX3I CGGCCG 1 cut(s) 317
BseXI GCAGC 7 cut(s) 52, 210, 308, 381, 450, 454, 606
Bsh1236I CGCG 1 cut(s) 269
Bsh1285I CGRYCG 4 cut(s) 190, 239, 320, 434
BshFI GGCC 3 cut(s) 319, 515, 627
BshNI GGYRCC 1 cut(s) 328
BsiEI CGRYCG 4 cut(s) 190, 239, 320, 434
BsiHKAI GWGCWC 2 cut(s) 313, 648
BsiHKCI CYCGRG 1 cut(s) 205
BsiSI CCGG 7 cut(s) 37, 99, 137, 278, 316, 560, 974
BslFI GGGAC 2 cut(s) 589, 755
BslI CCNNNNNNNGG 2 cut(s) 219, 812
BsmAI GTCTC 3 cut(s) 253, 356, 591
BsmFI GGGAC 2 cut(s) 589, 755
BsnI GGCC 3 cut(s) 319, 515, 627
Bso31I GGTCTC 1 cut(s) 591
BsoBI CYCGRG 1 cut(s) 205
Bsp119I TTCGAA 1 cut(s) 458
Bsp1286I GDGCHC 2 cut(s) 313, 648
Bsp143I GATC 3 cut(s) 76, 236, 472
Bsp1720I GCTNAGC 1 cut(s) 164
BspANI GGCC 3 cut(s) 319, 515, 627
BspCNI CTCAG 5 cut(s) 156, 583, 601, 736, 970
BspFNI CGCG 1 cut(s) 269
BspLI GGNNCC 7 cut(s) 204, 330, 479, 708, 770, 771, 817
BspMAI CTGCAG 1 cut(s) 399
BspPI GGATC 1 cut(s) 480
BspT104I TTCGAA 1 cut(s) 458
BspT107I GGYRCC 1 cut(s) 328
BspTNI GGTCTC 1 cut(s) 591
BsrDI GCAATG 1 cut(s) 686
BsrFI RCCGGY 2 cut(s) 136, 559
BsrI ACTGG 1 cut(s) 56
BssAI RCCGGY 2 cut(s) 136, 559
BssECI CCNNGG 5 cut(s) 169, 213, 314, 810, 819
BssMI GATC 3 cut(s) 76, 236, 472
BssT1I CCWWGG 3 cut(s) 213, 810, 819
Bst2UI CCWGG 1 cut(s) 170
Bst4CI ACNGT 1 cut(s) 188
Bst6I CTCTTC 1 cut(s) 377
BstBI TTCGAA 1 cut(s) 458
BstC8I GCNNGC 4 cut(s) 264, 350, 561, 993
BstDEI CTNAG 5 cut(s) 164, 570, 588, 723, 978
BstEII GGTNACC 1 cut(s) 610
BstF5I GGATG 3 cut(s) 204, 376, 1015
BstFNI CGCG 1 cut(s) 269
BstKTI GATC 3 cut(s) 79, 239, 475
BstMAI GTCTC 3 cut(s) 253, 356, 591
BstMBI GATC 3 cut(s) 76, 236, 472
BstMCI CGRYCG 4 cut(s) 190, 239, 320, 434
BstMWI GCNNNNNNNGC 1 cut(s) 556
BstNI CCWGG 1 cut(s) 170
BstPI GGTNACC 1 cut(s) 610
BstSCI CCNGG 3 cut(s) 35, 168, 314
BstSFI CTRYAG 1 cut(s) 395
BstSLI GKGCMC 2 cut(s) 313, 648
BstUI CGCG 1 cut(s) 269
BstV1I GCAGC 7 cut(s) 52, 210, 308, 381, 450, 454, 606
BstV2I GAAGAC 1 cut(s) 234
BstX2I RGATCY 1 cut(s) 76
BstYI RGATCY 1 cut(s) 76
BstZI CGGCCG 1 cut(s) 317
BsuRI GGCC 3 cut(s) 319, 515, 627
BtrI CACGTC 1 cut(s) 303
BtsCI GGATG 3 cut(s) 204, 376, 1015
BtsI GCAGTG 1 cut(s) 784
BtsIMutI CAGTG 2 cut(s) 63, 784
Cac8I GCNNGC 4 cut(s) 264, 350, 561, 993
Cfr10I RCCGGY 2 cut(s) 136, 559
Cfr13I GGNCC 3 cut(s) 202, 769, 878
Csp6I GTAC 1 cut(s) 916
CviAII CATG 1 cut(s) 956
CviQI GTAC 1 cut(s) 916
DdeI CTNAG 5 cut(s) 164, 570, 588, 723, 978
DpnI GATC 3 cut(s) 78, 238, 474
DpnII GATC 3 cut(s) 76, 236, 472
DrdI GACNNNNNNGTC 1 cut(s) 583
DseDI GACNNNNNNGTC 1 cut(s) 583
EaeI YGGCCR 2 cut(s) 317, 625
EagI CGGCCG 1 cut(s) 317
Eam1104I CTCTTC 1 cut(s) 377
EarI CTCTTC 1 cut(s) 377
EciI GGCGGA 2 cut(s) 537, 578
EclXI CGGCCG 1 cut(s) 317
Eco130I CCWWGG 3 cut(s) 213, 810, 819
Eco31I GGTCTC 1 cut(s) 591
Eco47I GGWCC 3 cut(s) 202, 769, 878
Eco52I CGGCCG 1 cut(s) 317
Eco57I CTGAAG 1 cut(s) 228
Eco88I CYCGRG 1 cut(s) 205
Eco91I GGTNACC 1 cut(s) 610
EcoO109I RGGNCCY 1 cut(s) 769
EcoO65I GGTNACC 1 cut(s) 610
EcoRI GAATTC 1 cut(s) 730
EcoRII CCWGG 1 cut(s) 168
EcoT14I CCWWGG 3 cut(s) 213, 810, 819
ErhI CCWWGG 3 cut(s) 213, 810, 819
FaeI CATG 1 cut(s) 959
FaiI YATR 7 cut(s) 326, 468, 851, 946, 957, 1029, 1031
FalI AAGNNNNNCTT 2 cut(s) 891, 923
FaqI GGGAC 2 cut(s) 589, 755
FatI CATG 1 cut(s) 955
FauI CCCGC 1 cut(s) 211
FblI GTMKAC 2 cut(s) 129, 863
FokI GGATG 3 cut(s) 211, 383, 1002
FspBI CTAG 1 cut(s) 509
HaeIII GGCC 3 cut(s) 319, 515, 627
HapII CCGG 7 cut(s) 37, 99, 137, 278, 316, 560, 974
Hin1II CATG 1 cut(s) 959
HincII GTYRAC 1 cut(s) 130
HindII GTYRAC 1 cut(s) 130
HinfI GANTC 6 cut(s) 146, 274, 566, 617, 683, 970
HpaII CCGG 7 cut(s) 37, 99, 137, 278, 316, 560, 974
HphI GGTGA 4 cut(s) 292, 709, 938, 1016
Hpy166II GTNNAC 4 cut(s) 130, 311, 646, 864
Hpy188I TCNGA 9 cut(s) 151, 253, 336, 357, 436, 477, 622, 726, 969
Hpy188III TCNNGA 2 cut(s) 114, 881
Hpy8I GTNNAC 4 cut(s) 130, 311, 646, 864
Hpy99I CGWCG 9 cut(s) 107, 128, 131, 134, 155, 158, 304, 361, 607
HpyAV CCTTC 2 cut(s) 382, 893
HpyCH4III ACNGT 1 cut(s) 188
HpyCH4IV ACGT 2 cut(s) 156, 302
HpyCH4V TGCA 8 cut(s) 142, 226, 311, 397, 466, 646, 654, 789
HpyF10VI GCNNNNNNNGC 1 cut(s) 556
HpyF3I CTNAG 5 cut(s) 164, 570, 588, 723, 978
HpySE526I ACGT 2 cut(s) 156, 302
Hsp92II CATG 1 cut(s) 959
KflI GGGWCCC 1 cut(s) 769
KroI GCCGGC 1 cut(s) 559
KroNI GCCGGC 1 cut(s) 561
Kzo9I GATC 3 cut(s) 76, 236, 472
LmnI GCTCC 2 cut(s) 391, 477
Lsp1109I GCAGC 7 cut(s) 52, 210, 308, 381, 450, 454, 606
MaeI CTAG 1 cut(s) 509
MaeII ACGT 2 cut(s) 156, 302
MaeIII GTNAC 2 cut(s) 610, 715
MalI GATC 3 cut(s) 78, 238, 474
MboI GATC 3 cut(s) 76, 236, 472
MboII GAAGA 2 cut(s) 234, 394
MflI RGATCY 1 cut(s) 76
MhlI GDGCHC 2 cut(s) 313, 648
MlsI TGGCCA 1 cut(s) 627
MluCI AATT 4 cut(s) 64, 90, 487, 730
MluNI TGGCCA 1 cut(s) 627
MlyI GAGTC 4 cut(s) 268, 626, 692, 964
MmeI TCCRAC 5 cut(s) 174, 276, 380, 414, 822
Mox20I TGGCCA 1 cut(s) 627
MreI CGCCGGCG 1 cut(s) 559
MroNI GCCGGC 1 cut(s) 559
MroXI GAANNNNTTC 2 cut(s) 94, 903
MscI TGGCCA 1 cut(s) 627
MseI TTAA 1 cut(s) 987
MslI CAYNNNNRTG 1 cut(s) 996
Msp20I TGGCCA 1 cut(s) 627
MspA1I CMGCKG 1 cut(s) 597
MspI CCGG 7 cut(s) 37, 99, 137, 278, 316, 560, 974
MspR9I CCNGG 3 cut(s) 37, 170, 316
MvaI CCWGG 1 cut(s) 170
MvnI CGCG 1 cut(s) 269
MwoI GCNNNNNNNGC 1 cut(s) 556
NaeI GCCGGC 1 cut(s) 561
NciI CCSGG 2 cut(s) 37, 316
NdeII GATC 3 cut(s) 76, 236, 472
NgoMIV GCCGGC 1 cut(s) 559
NlaIII CATG 1 cut(s) 959
NlaIV GGNNCC 7 cut(s) 204, 330, 479, 708, 770, 771, 817
NmuCI GTSAC 1 cut(s) 715
NspV TTCGAA 1 cut(s) 458
OliI CACNNNNGTG 1 cut(s) 996
PcsI WCGNNNNNNNCGW 2 cut(s) 129, 266
PdiI GCCGGC 1 cut(s) 561
PdmI GAANNNNTTC 2 cut(s) 94, 903
PfeI GAWTC 2 cut(s) 146, 566
Ple19I CGATCG 1 cut(s) 239
PleI GAGTC 4 cut(s) 268, 625, 691, 964
PpsI GAGTC 4 cut(s) 268, 625, 691, 964
PpuMI RGGWCCY 1 cut(s) 769
Psp5II RGGWCCY 1 cut(s) 769
Psp6I CCWGG 1 cut(s) 168
PspEI GGTNACC 1 cut(s) 610
PspGI CCWGG 1 cut(s) 168
PspN4I GGNNCC 7 cut(s) 204, 330, 479, 708, 770, 771, 817
PspPI GGNCC 3 cut(s) 202, 769, 878
PspPPI RGGWCCY 1 cut(s) 769
PstI CTGCAG 1 cut(s) 399
PsuI RGATCY 1 cut(s) 76
PvuI CGATCG 1 cut(s) 239
RsaI GTAC 1 cut(s) 917
RsaNI GTAC 1 cut(s) 916
RseI CAYNNNNRTG 1 cut(s) 996
SalI GTCGAC 1 cut(s) 128
SaqAI TTAA 1 cut(s) 987
Sau3AI GATC 3 cut(s) 76, 236, 472
Sau96I GGNCC 3 cut(s) 202, 769, 878
SchI GAGTC 4 cut(s) 268, 626, 692, 964
ScrFI CCNGG 3 cut(s) 37, 170, 316
SduI GDGCHC 2 cut(s) 313, 648
SfcI CTRYAG 1 cut(s) 395
SfuI TTCGAA 1 cut(s) 458
SgrAI CRCCGGYG 1 cut(s) 559
SgrDI CGTCGACG 1 cut(s) 128
SinI GGWCC 3 cut(s) 202, 769, 878
SmiMI CAYNNNNRTG 1 cut(s) 996
SmlI CTYRAG 2 cut(s) 403, 657
SmoI CTYRAG 2 cut(s) 403, 657
Sse9I AATT 4 cut(s) 64, 90, 487, 730
SspI AATATT 1 cut(s) 679
SspMI CTAG 1 cut(s) 509
StyD4I CCNGG 3 cut(s) 35, 168, 314
StyI CCWWGG 3 cut(s) 213, 810, 819
TaaI ACNGT 1 cut(s) 188
TaiI ACGT 2 cut(s) 159, 305
TaqI TCGA 5 cut(s) 115, 129, 458, 492, 734
TasI AATT 4 cut(s) 64, 90, 487, 730
TauI GCSGC 5 cut(s) 269, 518, 531, 553, 600
TfiI GAWTC 2 cut(s) 146, 566
Tru1I TTAA 1 cut(s) 987
Tru9I TTAA 1 cut(s) 987
TscAI CASTG 2 cut(s) 63, 791
TseFI GTSAC 1 cut(s) 715
TseI GCWGC 7 cut(s) 40, 223, 296, 394, 442, 463, 594
Tsp45I GTSAC 1 cut(s) 715
TspDTI ATGAA 1 cut(s) 743
TspGWI ACGGA 1 cut(s) 374
TspRI CASTG 2 cut(s) 63, 791
VneI GTGCAC 2 cut(s) 309, 644
VpaK11BI GGWCC 3 cut(s) 202, 769, 878
XapI RAATTY 2 cut(s) 487, 730
XmiI GTMKAC 2 cut(s) 129, 863
XmnI GAANNNNTTC 2 cut(s) 94, 903
XspI CTAG 1 cut(s) 509
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.