Rh7BG056700

Ninja-family protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0002373
Physical Location & Seq
Reverse (-)
3774751 .. 3777369
2619 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG056700.1

Sequence Viewer

Length: 723 bp
ATGGCGGGCGAAGAGGACCAACACGATCTCGGGCTCTCACTTGGGGGACTTTACCAAGGCAACTCGGGTGGGGCCCGCATGGCACGCGCTGTGTCGGTGGGAGTCGATGTGACTGAGGTGGCGGCGGCGCCGCGTCCCAGGGCGGTTTCTCTGCCGTCGGTTAGTGAGCTGGAGATGATGAGGGTCTCTGAGGTTCAGTTTCTGAGCAGGGCGATGGCTGCAAGCCTGAGTTTGACTATTCAGGAGGAAAAGGCTAAGAAAGCTCCGGCAGAGGCGGTCCGGCTGCCTGAAGTGGCTGCTCTGGGAGTGAATGTGACTGGATCTGGACGCTTGGCTGCAACAAGCAGCAGAGTCAGTTCTGAGCTTATGTCTGGAGAAGGGAGGGCCAATCAGCCTGTGGTCACCACGTCAATGATGGCTAACACAAAAAAGGTGAAGGCTGATGACCCTGAACAGGACAGTGCAGCAAAGAGGGCTAGAGTTTATCATCACAATGTTGTGAGGCCAATTAGGCGTGAAGGGATGGTCAGAATGCCTTCTGTGAAAACCACTGGGGCTGATGGGAAGAAAGTGGAAGGTTACCTGTACAAGTATCTTGGAGGAAAAGTGCGGATTGTGTGTGCTTGCCATGGGACTTTCCAGTCCCCAGCGGAGTTCGTCAAGCATGCCGGTGGCAATGAGGTCGCCAATCCTTTGAAGCAAATCACTGTTTCCTTTTATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04062 ko04144 ko04520 ko04530 ko04666 ko04810 ko05100 ko05130 ko05131 ko05132 ko05231 map04062 map04144 map04520 map04530 map04666 map04810 map05100 map05130 map05131 map05132 map05231
Pfam Domains
Protein Families
EAR Jas NINJA_B

Protein Analysis

240

Amino Acids

25.5

Weight (kDa)

9.46

Isoelectric Point (pI)

44.84

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TDBD PF16135 204 - 236 2.6e-07 Tify domain binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 640
AccB1I GGYRCC 1 cut(s) 127
AccII CGCG 2 cut(s) 87, 133
AciI CCGC 9 cut(s) 5, 76, 122, 125, 131, 143, 275, 610, 650
AclWI GGATC 1 cut(s) 328
AcuI CTGAAG 1 cut(s) 309
AcyI GRCGYC 1 cut(s) 128
AfaI GTAC 1 cut(s) 587
AfiI CCNNNNNNNGG 1 cut(s) 454
AgsI TTSAA 1 cut(s) 697
AjiI CACGTC 1 cut(s) 408
AjnI CCWGG 1 cut(s) 137
AluBI AGCT 3 cut(s) 169, 263, 364
AluI AGCT 3 cut(s) 169, 263, 364
Alw26I GTCTC 1 cut(s) 190
AlwI GGATC 1 cut(s) 328
AlwNI CAGNNNCTG 1 cut(s) 202
Ama87I CYCGRG 2 cut(s) 29, 64
AoxI GGCC 3 cut(s) 72, 384, 503
ApaI GGGCCC 1 cut(s) 76
ApeKI GCWGC 6 cut(s) 218, 283, 296, 335, 345, 464
Asp700I GAANNNNTTC 1 cut(s) 535
AspLEI GCGC 2 cut(s) 89, 130
AspS9I GGNCC 5 cut(s) 16, 72, 73, 277, 384
AsuHPI GGTGA 2 cut(s) 394, 445
AvaI CYCGRG 2 cut(s) 29, 64
AvaII GGWCC 2 cut(s) 16, 277
BaeGI GKGCMC 1 cut(s) 76
BanI GGYRCC 1 cut(s) 127
BanII GRGCYC 2 cut(s) 36, 76
BbvI GCAGC 6 cut(s) 205, 270, 283, 322, 357, 476
BccI CCATC 4 cut(s) 208, 409, 517, 554
BceAI ACGGC 1 cut(s) 139
BcgI CGANNNNNNTGC 2 cut(s) 664, 698
BciT130I CCWGG 1 cut(s) 139
BcoDI GTCTC 1 cut(s) 190
BfaI CTAG 1 cut(s) 477
BfoI RGCGCY 1 cut(s) 131
BglI GCCNNNNNGGC 2 cut(s) 80, 511
BisI GCNGC 9 cut(s) 123, 126, 131, 219, 284, 297, 336, 346, 465
BlsI GCNGC 9 cut(s) 124, 127, 132, 220, 285, 298, 337, 347, 466
Bme1390I CCNGG 1 cut(s) 139
Bme18I GGWCC 2 cut(s) 16, 277
BmeT110I CYCGRG 2 cut(s) 29, 64
BmgBI CACGTC 1 cut(s) 408
BmgT120I GGNCC 5 cut(s) 16, 72, 73, 277, 384
BmiI GGNNCC 3 cut(s) 73, 74, 129
BmrFI CCNGG 1 cut(s) 139
BmrI ACTGGG 1 cut(s) 561
BmuI ACTGGG 1 cut(s) 561
BpmI CTGGAG 2 cut(s) 191, 393
BsaHI GRCGYC 1 cut(s) 128
BsaI GGTCTC 1 cut(s) 190
BsaJI CCNNGG 4 cut(s) 55, 137, 138, 628
BsaXI ACNNNNNCTCC 6 cut(s) 93, 123, 297, 327, 591, 621
Bsc4I CCNNNNNNNGG 1 cut(s) 454
Bse118I RCCGGY 1 cut(s) 668
Bse1I ACTGG 3 cut(s) 322, 556, 640
Bse3DI GCAATG 1 cut(s) 682
BseBI CCWGG 1 cut(s) 139
BseDI CCNNGG 4 cut(s) 55, 137, 138, 628
BseGI GGATG 1 cut(s) 528
BseLI CCNNNNNNNGG 1 cut(s) 454
BseMI GCAATG 1 cut(s) 682
BseMII CTCAG 5 cut(s) 105, 180, 194, 218, 351
BseNI ACTGG 3 cut(s) 322, 556, 640
BseSI GKGCMC 1 cut(s) 76
BseXI GCAGC 6 cut(s) 205, 270, 283, 322, 357, 476
BseYI CCCAGC 1 cut(s) 646
BsgI GTGCAG 1 cut(s) 483
Bsh1236I CGCG 2 cut(s) 87, 133
BshFI GGCC 3 cut(s) 74, 386, 505
BshNI GGYRCC 1 cut(s) 127
BsiHKCI CYCGRG 2 cut(s) 29, 64
BsiSI CCGG 3 cut(s) 266, 280, 669
BslFI GGGAC 4 cut(s) 60, 120, 628, 646
BslI CCNNNNNNNGG 1 cut(s) 454
BsmAI GTCTC 1 cut(s) 190
BsmFI GGGAC 4 cut(s) 60, 120, 628, 646
BsmI GAATGC 1 cut(s) 537
BsnI GGCC 3 cut(s) 74, 386, 505
Bso31I GGTCTC 1 cut(s) 190
BsoBI CYCGRG 2 cut(s) 29, 64
Bsp120I GGGCCC 1 cut(s) 72
Bsp1286I GDGCHC 2 cut(s) 36, 76
Bsp1407I TGTACA 1 cut(s) 585
Bsp143I GATC 2 cut(s) 25, 320
Bsp19I CCATGG 1 cut(s) 628
BspACI CCGC 9 cut(s) 5, 76, 122, 125, 131, 143, 275, 610, 650
BspANI GGCC 3 cut(s) 74, 386, 505
BspCNI CTCAG 5 cut(s) 106, 181, 195, 219, 352
BspFNI CGCG 2 cut(s) 87, 133
BspLI GGNNCC 3 cut(s) 73, 74, 129
BspPI GGATC 1 cut(s) 328
BspT107I GGYRCC 1 cut(s) 127
BspTNI GGTCTC 1 cut(s) 190
BsrDI GCAATG 1 cut(s) 682
BsrFI RCCGGY 1 cut(s) 668
BsrGI TGTACA 1 cut(s) 585
BsrI ACTGG 3 cut(s) 322, 556, 640
BssAI RCCGGY 1 cut(s) 668
BssECI CCNNGG 4 cut(s) 55, 137, 138, 628
BssMI GATC 2 cut(s) 25, 320
BssNI GRCGYC 1 cut(s) 128
BssT1I CCWWGG 2 cut(s) 55, 628
Bst2UI CCWGG 1 cut(s) 139
Bst4CI ACNGT 2 cut(s) 461, 709
Bst6I CTCTTC 1 cut(s) 6
BstACI GRCGYC 1 cut(s) 128
BstAUI TGTACA 1 cut(s) 585
BstC8I GCNNGC 6 cut(s) 7, 76, 85, 223, 625, 666
BstDEI CTNAG 6 cut(s) 114, 189, 203, 227, 255, 360
BstDSI CCRYGG 1 cut(s) 628
BstEII GGTNACC 2 cut(s) 400, 578
BstF5I GGATG 1 cut(s) 528
BstFNI CGCG 2 cut(s) 87, 133
BstH2I RGCGCY 1 cut(s) 131
BstHHI GCGC 2 cut(s) 89, 130
BstKTI GATC 2 cut(s) 28, 323
BstMAI GTCTC 1 cut(s) 190
BstMBI GATC 2 cut(s) 25, 320
BstMWI GCNNNNNNNGC 6 cut(s) 80, 84, 218, 260, 473, 511
BstNI CCWGG 1 cut(s) 139
BstNSI RCATGY 1 cut(s) 668
BstPI GGTNACC 2 cut(s) 400, 578
BstSCI CCNGG 1 cut(s) 137
BstSLI GKGCMC 1 cut(s) 76
BstUI CGCG 2 cut(s) 87, 133
BstV1I GCAGC 6 cut(s) 205, 270, 283, 322, 357, 476
BstX2I RGATCY 1 cut(s) 320
BstYI RGATCY 1 cut(s) 320
BsuRI GGCC 3 cut(s) 74, 386, 505
BtgI CCRYGG 1 cut(s) 628
BtgZI GCGATG 1 cut(s) 227
BtrI CACGTC 1 cut(s) 408
BtsCI GGATG 1 cut(s) 528
BtsIMutI CAGTG 3 cut(s) 466, 549, 705
Cac8I GCNNGC 6 cut(s) 7, 76, 85, 223, 625, 666
CaiI CAGNNNCTG 1 cut(s) 202
CfoI GCGC 2 cut(s) 89, 130
Cfr10I RCCGGY 1 cut(s) 668
Cfr13I GGNCC 5 cut(s) 16, 72, 73, 277, 384
CpoI CGGWCCG 1 cut(s) 277
CseI GACGC 2 cut(s) 122, 336
Csp6I GTAC 1 cut(s) 586
CspCI CAANNNNNGTGG 2 cut(s) 49, 84
CspI CGGWCCG 1 cut(s) 277
CviAII CATG 3 cut(s) 79, 629, 665
CviQI GTAC 1 cut(s) 586
DdeI CTNAG 6 cut(s) 114, 189, 203, 227, 255, 360
DinI GGCGCC 1 cut(s) 129
DpnI GATC 2 cut(s) 27, 322
DpnII GATC 2 cut(s) 25, 320
DrdI GACNNNNNNGTC 1 cut(s) 640
DseDI GACNNNNNNGTC 1 cut(s) 640
Eam1104I CTCTTC 1 cut(s) 6
EarI CTCTTC 1 cut(s) 6
Eco130I CCWWGG 2 cut(s) 55, 628
Eco24I GRGCYC 2 cut(s) 36, 76
Eco31I GGTCTC 1 cut(s) 190
Eco47I GGWCC 2 cut(s) 16, 277
Eco57I CTGAAG 1 cut(s) 309
Eco88I CYCGRG 2 cut(s) 29, 64
Eco91I GGTNACC 2 cut(s) 400, 578
EcoO109I RGGNCCY 1 cut(s) 72
EcoO65I GGTNACC 2 cut(s) 400, 578
EcoRII CCWGG 1 cut(s) 137
EcoT14I CCWWGG 2 cut(s) 55, 628
EcoT38I GRGCYC 2 cut(s) 36, 76
EgeI GGCGCC 1 cut(s) 129
EheI GGCGCC 1 cut(s) 129
ErhI CCWWGG 2 cut(s) 55, 628
FaeI CATG 3 cut(s) 82, 632, 668
FaiI YATR 4 cut(s) 80, 368, 630, 666
FaqI GGGAC 4 cut(s) 60, 120, 628, 646
FatI CATG 3 cut(s) 78, 628, 664
FauI CCCGC 1 cut(s) 83
Fnu4HI GCNGC 9 cut(s) 123, 126, 131, 219, 284, 297, 336, 346, 465
FokI GGATG 1 cut(s) 535
FriOI GRGCYC 2 cut(s) 36, 76
Fsp4HI GCNGC 9 cut(s) 123, 126, 131, 219, 284, 297, 336, 346, 465
FspBI CTAG 1 cut(s) 477
GlaI GCGC 2 cut(s) 88, 129
GluI GCNGC 9 cut(s) 123, 126, 131, 219, 284, 297, 336, 346, 465
GsaI CCCAGC 1 cut(s) 650
GsuI CTGGAG 2 cut(s) 191, 393
HaeII RGCGCY 1 cut(s) 131
HaeIII GGCC 3 cut(s) 74, 386, 505
HapII CCGG 3 cut(s) 266, 280, 669
HgaI GACGC 2 cut(s) 122, 336
HhaI GCGC 2 cut(s) 89, 130
Hin1I GRCGYC 1 cut(s) 128
Hin1II CATG 3 cut(s) 82, 632, 668
Hin6I GCGC 2 cut(s) 87, 128
HinP1I GCGC 2 cut(s) 87, 128
HinfI GANTC 2 cut(s) 102, 351
HpaII CCGG 3 cut(s) 266, 280, 669
HphI GGTGA 2 cut(s) 394, 445
Hpy188I TCNGA 4 cut(s) 190, 204, 361, 530
Hpy188III TCNNGA 3 cut(s) 242, 324, 372
Hpy99I CGWCG 1 cut(s) 160
HpyAV CCTTC 5 cut(s) 371, 430, 512, 546, 569
HpyCH4III ACNGT 2 cut(s) 461, 709
HpyCH4IV ACGT 1 cut(s) 407
HpyCH4V TGCA 3 cut(s) 221, 338, 464
HpyF10VI GCNNNNNNNGC 6 cut(s) 80, 84, 218, 260, 473, 511
HpyF3I CTNAG 6 cut(s) 114, 189, 203, 227, 255, 360
HpySE526I ACGT 1 cut(s) 407
Hsp92I GRCGYC 1 cut(s) 128
Hsp92II CATG 3 cut(s) 82, 632, 668
HspAI GCGC 2 cut(s) 87, 128
KasI GGCGCC 1 cut(s) 127
Kzo9I GATC 2 cut(s) 25, 320
LmnI GCTCC 1 cut(s) 268
Lsp1109I GCAGC 6 cut(s) 205, 270, 283, 322, 357, 476
MaeI CTAG 1 cut(s) 477
MaeII ACGT 1 cut(s) 407
MaeIII GTNAC 4 cut(s) 109, 313, 400, 578
MalI GATC 2 cut(s) 27, 322
MboI GATC 2 cut(s) 25, 320
MboII GAAGA 2 cut(s) 23, 577
MflI RGATCY 1 cut(s) 320
MhlI GDGCHC 2 cut(s) 36, 76
MluCI AATT 1 cut(s) 507
Mly113I GGCGCC 1 cut(s) 128
MlyI GAGTC 2 cut(s) 111, 360
MroXI GAANNNNTTC 1 cut(s) 535
MseI TTAA 1 cut(s) 721
MslI CAYNNNNRTG 3 cut(s) 410, 492, 669
MspA1I CMGCKG 1 cut(s) 650
MspI CCGG 3 cut(s) 266, 280, 669
MspR9I CCNGG 1 cut(s) 139
Mva1269I GAATGC 1 cut(s) 537
MvaI CCWGG 1 cut(s) 139
MvnI CGCG 2 cut(s) 87, 133
MwoI GCNNNNNNNGC 6 cut(s) 80, 84, 218, 260, 473, 511
NarI GGCGCC 1 cut(s) 128
NcoI CCATGG 1 cut(s) 628
NdeII GATC 2 cut(s) 25, 320
NlaIII CATG 3 cut(s) 82, 632, 668
NlaIV GGNNCC 3 cut(s) 73, 74, 129
NmuCI GTSAC 3 cut(s) 109, 313, 400
NspI RCATGY 1 cut(s) 668
PaeI GCATGC 1 cut(s) 668
PasI CCCWGGG 1 cut(s) 138
PctI GAATGC 1 cut(s) 537
PdmI GAANNNNTTC 1 cut(s) 535
PkrI GCNGC 9 cut(s) 124, 127, 132, 220, 285, 298, 337, 347, 466
PleI GAGTC 2 cut(s) 110, 359
PluTI GGCGCC 1 cut(s) 131
PpsI GAGTC 2 cut(s) 110, 359
Psp6I CCWGG 1 cut(s) 137
PspEI GGTNACC 2 cut(s) 400, 578
PspFI CCCAGC 1 cut(s) 646
PspGI CCWGG 1 cut(s) 137
PspN4I GGNNCC 3 cut(s) 73, 74, 129
PspOMI GGGCCC 1 cut(s) 72
PspPI GGNCC 5 cut(s) 16, 72, 73, 277, 384
PstNI CAGNNNCTG 1 cut(s) 202
PsuI RGATCY 1 cut(s) 320
RsaI GTAC 1 cut(s) 587
RsaNI GTAC 1 cut(s) 586
RseI CAYNNNNRTG 3 cut(s) 410, 492, 669
Rsr2I CGGWCCG 1 cut(s) 277
RsrII CGGWCCG 1 cut(s) 277
SaqAI TTAA 1 cut(s) 721
SatI GCNGC 9 cut(s) 123, 126, 131, 219, 284, 297, 336, 346, 465
Sau3AI GATC 2 cut(s) 25, 320
Sau96I GGNCC 5 cut(s) 16, 72, 73, 277, 384
SchI GAGTC 2 cut(s) 111, 360
ScrFI CCNGG 1 cut(s) 139
SduI GDGCHC 2 cut(s) 36, 76
SfoI GGCGCC 1 cut(s) 129
SinI GGWCC 2 cut(s) 16, 277
SmiMI CAYNNNNRTG 3 cut(s) 410, 492, 669
SphI GCATGC 1 cut(s) 668
Sse9I AATT 1 cut(s) 507
SsiI CCGC 9 cut(s) 5, 76, 122, 125, 131, 143, 275, 610, 650
SspDI GGCGCC 1 cut(s) 127
SspMI CTAG 1 cut(s) 477
StyD4I CCNGG 1 cut(s) 137
StyI CCWWGG 2 cut(s) 55, 628
TaaI ACNGT 2 cut(s) 461, 709
TaiI ACGT 1 cut(s) 410
TaqI TCGA 1 cut(s) 105
TasI AATT 1 cut(s) 507
TatI WGTACW 1 cut(s) 585
TauI GCSGC 3 cut(s) 125, 128, 133
Tru1I TTAA 1 cut(s) 721
Tru9I TTAA 1 cut(s) 721
TscAI CASTG 3 cut(s) 466, 556, 712
TseFI GTSAC 3 cut(s) 109, 313, 400
TseI GCWGC 6 cut(s) 218, 283, 296, 335, 345, 464
Tsp45I GTSAC 3 cut(s) 109, 313, 400
TspRI CASTG 3 cut(s) 466, 556, 712
VpaK11BI GGWCC 2 cut(s) 16, 277
XceI RCATGY 1 cut(s) 668
XcmI CCANNNNNNNNNTGG 2 cut(s) 394, 412
XmnI GAANNNNTTC 1 cut(s) 535
XspI CTAG 1 cut(s) 477
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.