RchiOBHm_Chr7g0183181

Ninja-family protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
7
OG0002373
Physical Location & Seq
Reverse (-)
4162654 .. 4162965
312 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ16342

Sequence Viewer

Length: 312 bp
ATGATGGCTAACACAAAAAAGGTGAAGGCTGATGACCCTGAACAAGACAGTGCAGCAAAGAGGGCTAGAGTTTATCATGGCAATGTTGTGAGGCCAATTAGGCGTGAAGGGATGGTTAGAATGCCTTCTGTGAAAACCATTGGGGCTGATGGGAAGAAAGTGGAAGGGTACCTGTACAAGTATCTTGAAGGAAAAGTGCGGATTGTATGTGCTTGCCATGGGACTTTCCAGTCCCCAGCGGAGTTCGTCAAGCATGCCGGTGGCAATGAGGTCGCCAATCCTTTGAAGCAAATCACTGTTTCCCTTGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04062 ko04144 ko04520 ko04530 ko04666 ko04810 ko05100 ko05130 ko05131 ko05132 ko05231 map04062 map04144 map04520 map04530 map04666 map04810 map05100 map05130 map05131 map05132 map05231
Pfam Domains
Protein Families
EAR Jas NINJA_B

Protein Analysis

103

Amino Acids

11.36

Weight (kDa)

9.61

Isoelectric Point (pI)

42.34

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TDBD PF16135 66 - 99 4.9e-08 Tify domain binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 229
Acc65I GGTACC 1 cut(s) 168
AccB1I GGYRCC 1 cut(s) 168
AciI CCGC 2 cut(s) 199, 239
AfaI GTAC 2 cut(s) 170, 176
AgsI TTSAA 2 cut(s) 188, 286
AoxI GGCC 1 cut(s) 92
ApeKI GCWGC 1 cut(s) 53
Asp700I GAANNNNTTC 1 cut(s) 124
Asp718I GGTACC 1 cut(s) 168
AsuHPI GGTGA 1 cut(s) 34
BanI GGYRCC 1 cut(s) 168
BbvI GCAGC 1 cut(s) 65
BccI CCATC 2 cut(s) 106, 143
BcgI CGANNNNNNTGC 2 cut(s) 253, 287
BfaI CTAG 1 cut(s) 66
BglI GCCNNNNNGGC 1 cut(s) 100
BisI GCNGC 1 cut(s) 54
BlsI GCNGC 1 cut(s) 55
BmiI GGNNCC 1 cut(s) 170
BsaJI CCNNGG 1 cut(s) 217
Bse118I RCCGGY 1 cut(s) 257
Bse1I ACTGG 1 cut(s) 229
Bse3DI GCAATG 2 cut(s) 88, 271
BseDI CCNNGG 1 cut(s) 217
BseGI GGATG 1 cut(s) 117
BseMI GCAATG 2 cut(s) 88, 271
BseNI ACTGG 1 cut(s) 229
BseXI GCAGC 1 cut(s) 65
BseYI CCCAGC 1 cut(s) 235
BsgI GTGCAG 1 cut(s) 72
BshFI GGCC 1 cut(s) 94
BshNI GGYRCC 1 cut(s) 168
BsiSI CCGG 1 cut(s) 258
BslFI GGGAC 2 cut(s) 217, 235
BsmFI GGGAC 2 cut(s) 217, 235
BsmI GAATGC 1 cut(s) 126
BsnI GGCC 1 cut(s) 94
Bsp1407I TGTACA 1 cut(s) 174
Bsp19I CCATGG 1 cut(s) 217
BspACI CCGC 2 cut(s) 199, 239
BspANI GGCC 1 cut(s) 94
BspLI GGNNCC 1 cut(s) 170
BspT107I GGYRCC 1 cut(s) 168
BsrDI GCAATG 2 cut(s) 88, 271
BsrFI RCCGGY 1 cut(s) 257
BsrGI TGTACA 1 cut(s) 174
BsrI ACTGG 1 cut(s) 229
BssAI RCCGGY 1 cut(s) 257
BssECI CCNNGG 1 cut(s) 217
BssT1I CCWWGG 1 cut(s) 217
Bst4CI ACNGT 2 cut(s) 50, 298
BstAUI TGTACA 1 cut(s) 174
BstC8I GCNNGC 2 cut(s) 214, 255
BstDSI CCRYGG 1 cut(s) 217
BstF5I GGATG 1 cut(s) 117
BstMWI GCNNNNNNNGC 2 cut(s) 62, 100
BstNSI RCATGY 1 cut(s) 257
BstV1I GCAGC 1 cut(s) 65
BsuRI GGCC 1 cut(s) 94
BtgI CCRYGG 1 cut(s) 217
BtsCI GGATG 1 cut(s) 117
BtsIMutI CAGTG 2 cut(s) 55, 294
Cac8I GCNNGC 2 cut(s) 214, 255
Cfr10I RCCGGY 1 cut(s) 257
Csp6I GTAC 2 cut(s) 169, 175
CviAII CATG 3 cut(s) 77, 218, 254
CviJI RGCY 5 cut(s) 8, 29, 65, 94, 146
CviKI_1 RGCY 5 cut(s) 8, 29, 65, 94, 146
CviQI GTAC 2 cut(s) 169, 175
DrdI GACNNNNNNGTC 1 cut(s) 229
DseDI GACNNNNNNGTC 1 cut(s) 229
Eco130I CCWWGG 1 cut(s) 217
EcoT14I CCWWGG 1 cut(s) 217
ErhI CCWWGG 1 cut(s) 217
FaeI CATG 3 cut(s) 80, 221, 257
FaiI YATR 4 cut(s) 78, 208, 219, 255
FaqI GGGAC 2 cut(s) 217, 235
FatI CATG 3 cut(s) 76, 217, 253
Fnu4HI GCNGC 1 cut(s) 54
FokI GGATG 1 cut(s) 124
Fsp4HI GCNGC 1 cut(s) 54
FspBI CTAG 1 cut(s) 66
GluI GCNGC 1 cut(s) 54
GsaI CCCAGC 1 cut(s) 239
HaeIII GGCC 1 cut(s) 94
HapII CCGG 1 cut(s) 258
Hin1II CATG 3 cut(s) 80, 221, 257
HpaII CCGG 1 cut(s) 258
HphI GGTGA 1 cut(s) 34
Hpy188III TCNNGA 1 cut(s) 185
HpyAV CCTTC 5 cut(s) 19, 101, 135, 158, 182
HpyCH4III ACNGT 2 cut(s) 50, 298
HpyCH4V TGCA 1 cut(s) 53
HpyF10VI GCNNNNNNNGC 2 cut(s) 62, 100
Hsp92II CATG 3 cut(s) 80, 221, 257
KpnI GGTACC 1 cut(s) 172
LpnPI CCDG 5 cut(s) 51, 185, 242, 249, 271
Lsp1109I GCAGC 1 cut(s) 65
MaeI CTAG 1 cut(s) 66
MboII GAAGA 1 cut(s) 166
MluCI AATT 1 cut(s) 96
MnlI CCTC 3 cut(s) 54, 84, 262
MroXI GAANNNNTTC 1 cut(s) 124
MseI TTAA 1 cut(s) 310
MslI CAYNNNNRTG 2 cut(s) 81, 258
MspA1I CMGCKG 1 cut(s) 239
MspI CCGG 1 cut(s) 258
Mva1269I GAATGC 1 cut(s) 126
MwoI GCNNNNNNNGC 2 cut(s) 62, 100
NcoI CCATGG 1 cut(s) 217
NlaIII CATG 3 cut(s) 80, 221, 257
NlaIV GGNNCC 1 cut(s) 170
NspI RCATGY 1 cut(s) 257
PaeI GCATGC 1 cut(s) 257
PctI GAATGC 1 cut(s) 126
PdmI GAANNNNTTC 1 cut(s) 124
PkrI GCNGC 1 cut(s) 55
PspFI CCCAGC 1 cut(s) 235
PspN4I GGNNCC 1 cut(s) 170
RsaI GTAC 2 cut(s) 170, 176
RsaNI GTAC 2 cut(s) 169, 175
RseI CAYNNNNRTG 2 cut(s) 81, 258
SaqAI TTAA 1 cut(s) 310
SatI GCNGC 1 cut(s) 54
SetI ASST 3 cut(s) 24, 174, 273
SmiMI CAYNNNNRTG 2 cut(s) 81, 258
SphI GCATGC 1 cut(s) 257
Sse9I AATT 1 cut(s) 96
SsiI CCGC 2 cut(s) 199, 239
SspMI CTAG 1 cut(s) 66
StyI CCWWGG 1 cut(s) 217
TaaI ACNGT 2 cut(s) 50, 298
TasI AATT 1 cut(s) 96
TatI WGTACW 1 cut(s) 174
Tru1I TTAA 1 cut(s) 310
Tru9I TTAA 1 cut(s) 310
TscAI CASTG 2 cut(s) 55, 301
TseI GCWGC 1 cut(s) 53
TspRI CASTG 2 cut(s) 55, 301
XceI RCATGY 1 cut(s) 257
XmnI GAANNNNTTC 1 cut(s) 124
XspI CTAG 1 cut(s) 66
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.