Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0002373

Physical Location & Seq

Genomic Coordinates Forward (+)

20774032 .. 20774892

Gene Structure 861 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom13g23090.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 687 bp

ATGAAAATCATATATAAAAACTCATACTCCTGGCGTGAGGATTCAAACCTCTTCCCTCCAAGTTGGGGATATGTACCAGTAATTCTAAAGATTACAAACCCTAGCCATCACTCCCATTTCAGTTTTCACCTTTTGGTTTTCTCAAACACTCTGTCTCCCCTCCGCTGCTTTCTTTCTCTCTACTTGCTTAGTTTATCTCTCTTTCTCTCCTTCCTCTCTTCCTCCAAAATGGTGGCTTTGAAATGTTTGTCCTCAATCTCCGATTTTGGTTTGACCCTAGCAAGAAAAGCAGAGACGACATGTCATGTGTCAAGGCCGTCGCACACAGTACTTCTACTGAGCATCTGGACCATCTCCTCCCCAAGTTCCAAGTTCCCAGCCTCCACGCACCCCCTATACGGACAATTCCCTATAGCCGGCCACCTACTAGAGCTCTCATCTTTCCTTCTTTCTCTCTCTCTCTCTCTGCATTGGGTATGTTGGGTTTTATTTATTTTTCAGTTAATGGTTAAGGTGGAAAAGTTTGTATTTTTCTCTGAATATGTTTTGGAATTTTCTAGATCTATAGTGGACTTGACTTCGAATTTGAATGTGGGCATGCAATATTGGAGTTCGATTATGGCATTTAGACGAACCCATTTGCTTTTTTTTTTTTTTTTTTTTTTTCTATTTGTATCAATCAATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

229

Amino Acids

26.33

Weight (kDa)

9.39

Isoelectric Point (pI)

35.53

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002373)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G29575 AT3G29575 AT3G29575
fragaria_vesca	FvH4_5g13760 FvH4_6g46820 FvH4_6g46820
malus_domestica	MD09G1067200.v1.1 MD17G1060200.v1.1
prunus_persica	Prupe.5G205900_v2.0.a1 Prupe.5G205900_v2.0.a1 Prupe.5G205900_v2.0.a1 Prupe.5G205900_v2.0.a1
pyrus_communis	pycom06g18020 pycom111g05650 pycom13g23090 pycom17g05990
rosa_chinensis	RchiOBHm_Chr2g0165801 RchiOBHm_Chr7g0183181
rosa_laevigata	RLG00000005069 RLG00000021557
rosa_multiflora	Rmu_co8279591.1_g000001 Rmu_co8332333.1_g000001 Rmu_sc0001861.1_g000014 Rmu_sc0003227.1_g000009 Rmu_sc0006832.1_g000002 Rmu_sc0012318.1_g000002 Rmu_ssc0000111.1_g000018
rosa_roxburghii	Rroxscaffold_2G00085490 Rroxscaffold_3G00270680
rosa_rugosa	Rorug02G0517800 Rorug06G0454600
rosa_samantha	Rh2AG583500 Rh2BG595600 Rh2CG221700 Rh2CG566300 Rh2DG605400 Rh7AG057000 Rh7BG056700 Rh7CG057800 Rh7DG056600
rosa_wichuraiana	Rw2G048660 Rw7G004650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	163
AcoI	YGGCCR	1 cut(s)	418
AcsI	RAATTY	2 cut(s)	551, 583
AfaI	GTAC	2 cut(s)	75, 330
AfiI	CCNNNNNNNGG	3 cut(s)	65, 398, 416
AflIII	ACRYGT	1 cut(s)	299
AgsI	TTSAA	3 cut(s)	45, 241, 589
AhdI	GACNNNNNGTC	1 cut(s)	300
AjnI	CCWGG	1 cut(s)	29
AluBI	AGCT	1 cut(s)	433
AluI	AGCT	1 cut(s)	433
Alw21I	GWGCWC	1 cut(s)	435
Alw26I	GTCTC	2 cut(s)	159, 287
AoxI	GGCC	2 cut(s)	314, 418
ApeKI	GCWGC	1 cut(s)	165
ApoI	RAATTY	2 cut(s)	551, 583
ArsI	GACNNNNNNTTYG	4 cut(s)	137, 169, 568, 600
AspS9I	GGNCC	1 cut(s)	348
AsuHPI	GGTGA	1 cut(s)	119
AsuII	TTCGAA	1 cut(s)	581
AvaII	GGWCC	1 cut(s)	348
BanII	GRGCYC	1 cut(s)	435
Bbv12I	GWGCWC	1 cut(s)	435
BbvI	GCAGC	1 cut(s)	152
BccI	CCATC	2 cut(s)	114, 359
BceAI	ACGGC	1 cut(s)	301
BciT130I	CCWGG	1 cut(s)	31
BcoDI	GTCTC	2 cut(s)	159, 287
BfaI	CTAG	4 cut(s)	102, 278, 428, 558
BfmI	CTRYAG	2 cut(s)	411, 564
BglII	AGATCT	1 cut(s)	560
BisI	GCNGC	1 cut(s)	166
BlsI	GCNGC	1 cut(s)	167
BmcAI	AGTACT	1 cut(s)	330
Bme1390I	CCNGG	1 cut(s)	31
Bme18I	GGWCC	1 cut(s)	348
BmeRI	GACNNNNNGTC	1 cut(s)	300
BmgT120I	GGNCC	1 cut(s)	348
BmrFI	CCNGG	1 cut(s)	31
BmsI	GCATC	1 cut(s)	351
Bpu14I	TTCGAA	1 cut(s)	581
BsaXI	ACNNNNNCTCC	4 cut(s)	11, 41, 139, 169
Bsc4I	CCNNNNNNNGG	3 cut(s)	65, 398, 416
Bse118I	RCCGGY	1 cut(s)	416
Bse1I	ACTGG	1 cut(s)	77
BseBI	CCWGG	1 cut(s)	31
BseLI	CCNNNNNNNGG	3 cut(s)	65, 398, 416
BseMII	CTCAG	1 cut(s)	329
BseNI	ACTGG	1 cut(s)	77
BseRI	GAGGAG	1 cut(s)	346
BseXI	GCAGC	1 cut(s)	152
BseYI	CCCAGC	1 cut(s)	376
BshFI	GGCC	2 cut(s)	316, 420
BsiHKAI	GWGCWC	1 cut(s)	435
BsiSI	CCGG	1 cut(s)	417
BslI	CCNNNNNNNGG	3 cut(s)	65, 398, 416
BsmAI	GTCTC	2 cut(s)	159, 287
BsmBI	CGTCTC	1 cut(s)	287
BsnI	GGCC	2 cut(s)	316, 420
Bsp119I	TTCGAA	1 cut(s)	581
Bsp1286I	GDGCHC	1 cut(s)	435
Bsp143I	GATC	1 cut(s)	560
BspACI	CCGC	1 cut(s)	163
BspANI	GGCC	2 cut(s)	316, 420
BspCNI	CTCAG	1 cut(s)	330
BspT104I	TTCGAA	1 cut(s)	581
BsrFI	RCCGGY	1 cut(s)	416
BsrI	ACTGG	1 cut(s)	77
BssAI	RCCGGY	1 cut(s)	416
BssMI	GATC	1 cut(s)	560
Bst2UI	CCWGG	1 cut(s)	31
Bst4CI	ACNGT	1 cut(s)	328
Bst6I	CTCTTC	2 cut(s)	56, 223
BstBI	TTCGAA	1 cut(s)	581
BstC8I	GCNNGC	2 cut(s)	418, 599
BstDEI	CTNAG	2 cut(s)	188, 338
BstKTI	GATC	1 cut(s)	563
BstMAI	GTCTC	2 cut(s)	159, 287
BstMBI	GATC	1 cut(s)	560
BstMWI	GCNNNNNNNGC	1 cut(s)	287
BstNI	CCWGG	1 cut(s)	31
BstNSI	RCATGY	2 cut(s)	303, 601
BstSCI	CCNGG	1 cut(s)	29
BstSFI	CTRYAG	2 cut(s)	411, 564
BstV1I	GCAGC	1 cut(s)	152
BstX2I	RGATCY	1 cut(s)	560
BstXI	CCANNNNNNTGG	1 cut(s)	232
BstYI	RGATCY	1 cut(s)	560
BsuRI	GGCC	2 cut(s)	316, 420
Cac8I	GCNNGC	2 cut(s)	418, 599
Cfr10I	RCCGGY	1 cut(s)	416
Cfr13I	GGNCC	1 cut(s)	348
Csp6I	GTAC	2 cut(s)	74, 329
CviAII	CATG	3 cut(s)	300, 305, 598
CviJI	RGCY	7 cut(s)	105, 236, 316, 380, 416, 420, 433
CviKI_1	RGCY	7 cut(s)	105, 236, 316, 380, 416, 420, 433
CviQI	GTAC	2 cut(s)	74, 329
DdeI	CTNAG	2 cut(s)	188, 338
DpnI	GATC	1 cut(s)	562
DpnII	GATC	1 cut(s)	560
DriI	GACNNNNNGTC	1 cut(s)	300
EaeI	YGGCCR	1 cut(s)	418
Eam1104I	CTCTTC	2 cut(s)	56, 223
Eam1105I	GACNNNNNGTC	1 cut(s)	300
EarI	CTCTTC	2 cut(s)	56, 223
Ecl136II	GAGCTC	1 cut(s)	433
Eco24I	GRGCYC	1 cut(s)	435
Eco47I	GGWCC	1 cut(s)	348
Eco53kI	GAGCTC	1 cut(s)	433
EcoICRI	GAGCTC	1 cut(s)	433
EcoRII	CCWGG	1 cut(s)	29
EcoT38I	GRGCYC	1 cut(s)	435
Esp3I	CGTCTC	1 cut(s)	287
FaeI	CATG	3 cut(s)	303, 308, 601
FatI	CATG	3 cut(s)	299, 304, 597
Fnu4HI	GCNGC	1 cut(s)	166
FriOI	GRGCYC	1 cut(s)	435
Fsp4HI	GCNGC	1 cut(s)	166
FspBI	CTAG	4 cut(s)	102, 278, 428, 558
GluI	GCNGC	1 cut(s)	166
GsaI	CCCAGC	1 cut(s)	380
HaeIII	GGCC	2 cut(s)	316, 420
HapII	CCGG	1 cut(s)	417
Hin1II	CATG	3 cut(s)	303, 308, 601
HinfI	GANTC	1 cut(s)	41
HpaII	CCGG	1 cut(s)	417
HphI	GGTGA	1 cut(s)	119
Hpy166II	GTNNAC	1 cut(s)	571
Hpy188I	TCNGA	2 cut(s)	262, 538
Hpy188III	TCNNGA	2 cut(s)	346, 558
Hpy8I	GTNNAC	1 cut(s)	571
Hpy99I	CGWCG	1 cut(s)	322
HpyAV	CCTTC	2 cut(s)	220, 455
HpyCH4III	ACNGT	1 cut(s)	328
HpyCH4V	TGCA	2 cut(s)	469, 601
HpyF10VI	GCNNNNNNNGC	1 cut(s)	287
HpyF3I	CTNAG	2 cut(s)	188, 338
Hsp92II	CATG	3 cut(s)	303, 308, 601
KroI	GCCGGC	1 cut(s)	416
KroNI	GCCGGC	1 cut(s)	418
Kzo9I	GATC	1 cut(s)	560
LpnPI	CCDG	6 cut(s)	16, 43, 90, 331, 390, 430
Lsp1109I	GCAGC	1 cut(s)	152
LweI	GCATC	1 cut(s)	351
MaeI	CTAG	4 cut(s)	102, 278, 428, 558
MalI	GATC	1 cut(s)	562
MboI	GATC	1 cut(s)	560
MboII	GAAGA	2 cut(s)	43, 210
MflI	RGATCY	1 cut(s)	560
MhlI	GDGCHC	1 cut(s)	435
MluCI	AATT	5 cut(s)	81, 404, 551, 583, 682
MnlI	CCTC	9 cut(s)	31, 59, 66, 170, 224, 232, 262, 367, 391
MroNI	GCCGGC	1 cut(s)	416
MseI	TTAA	3 cut(s)	503, 510, 685
MspA1I	CMGCKG	1 cut(s)	165
MspI	CCGG	1 cut(s)	417
MspR9I	CCNGG	1 cut(s)	31
MvaI	CCWGG	1 cut(s)	31
MwoI	GCNNNNNNNGC	1 cut(s)	287
NaeI	GCCGGC	1 cut(s)	418
NdeII	GATC	1 cut(s)	560
NgoMIV	GCCGGC	1 cut(s)	416
NlaIII	CATG	3 cut(s)	303, 308, 601
NspI	RCATGY	2 cut(s)	303, 601
NspV	TTCGAA	1 cut(s)	581
PaeI	GCATGC	1 cut(s)	601
PciI	ACATGT	1 cut(s)	299
PdiI	GCCGGC	1 cut(s)	418
PfeI	GAWTC	1 cut(s)	41
PkrI	GCNGC	1 cut(s)	167
PscI	ACATGT	1 cut(s)	299
Psp124BI	GAGCTC	1 cut(s)	435
Psp6I	CCWGG	1 cut(s)	29
PspFI	CCCAGC	1 cut(s)	376
PspGI	CCWGG	1 cut(s)	29
PspPI	GGNCC	1 cut(s)	348
PsuI	RGATCY	1 cut(s)	560
RsaI	GTAC	2 cut(s)	75, 330
RsaNI	GTAC	2 cut(s)	74, 329
SacI	GAGCTC	1 cut(s)	435
SaqAI	TTAA	3 cut(s)	503, 510, 685
SatI	GCNGC	1 cut(s)	166
Sau3AI	GATC	1 cut(s)	560
Sau96I	GGNCC	1 cut(s)	348
ScaI	AGTACT	1 cut(s)	330
ScrFI	CCNGG	1 cut(s)	31
SduI	GDGCHC	1 cut(s)	435
SetI	ASST	5 cut(s)	51, 132, 426, 435, 516
SfaNI	GCATC	1 cut(s)	351
SfcI	CTRYAG	2 cut(s)	411, 564
SfuI	TTCGAA	1 cut(s)	581
SinI	GGWCC	1 cut(s)	348
SphI	GCATGC	1 cut(s)	601
Sse9I	AATT	5 cut(s)	81, 404, 551, 583, 682
SsiI	CCGC	1 cut(s)	163
SspI	AATATT	1 cut(s)	605
SspMI	CTAG	4 cut(s)	102, 278, 428, 558
SstI	GAGCTC	1 cut(s)	435
StyD4I	CCNGG	1 cut(s)	29
TaaI	ACNGT	1 cut(s)	328
TaqI	TCGA	2 cut(s)	581, 614
TasI	AATT	5 cut(s)	81, 404, 551, 583, 682
TatI	WGTACW	1 cut(s)	328
TfiI	GAWTC	1 cut(s)	41
Tru1I	TTAA	3 cut(s)	503, 510, 685
Tru9I	TTAA	3 cut(s)	503, 510, 685
TseI	GCWGC	1 cut(s)	165
TspDTI	ATGAA	1 cut(s)	17
TspGWI	ACGGA	1 cut(s)	414
VpaK11BI	GGWCC	1 cut(s)	348
XapI	RAATTY	2 cut(s)	551, 583
XbaI	TCTAGA	1 cut(s)	557
XceI	RCATGY	2 cut(s)	303, 601
XspI	CTAG	4 cut(s)	102, 278, 428, 558
ZrmI	AGTACT	1 cut(s)	330

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.