Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8332333.1

Orthogroup ID

OG0002373

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 825

Gene Structure 825 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8332333.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 419 bp

tggtgcacaaatgcaccgaagcgagaagcgataccaatattgagtcattgccaaagagtgaaaaggaaccacttgtcaccccgcagatgaattcgactgctgaaaactctgggcagttgaacggaggagtcccaatggaaaaccactgcaacaaatccacaaatcctgtcaagggaagcaaggagattgtgaggaatgtgttggaaaatatgccttgtgtgtctactaaaggagatggtccagacgggaaaagaatagaaggctttctttacaggtacaagaaaggtgaggaagtgaggatagtatgcgtttgtcatggcagctttctgactccggctgagtttgttaagcacgctggtggtggtgatgtacaacatcctctcaaacatatagtggtcagtcctactcccattttgtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EAR Jas NINJA_B

Protein Analysis

138

Amino Acids

15.0

Weight (kDa)

7.81

Isoelectric Point (pI)

47.5

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002373)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G29575 AT3G29575 AT3G29575
fragaria_vesca	FvH4_5g13760 FvH4_6g46820 FvH4_6g46820
malus_domestica	MD09G1067200.v1.1 MD17G1060200.v1.1
prunus_persica	Prupe.5G205900_v2.0.a1 Prupe.5G205900_v2.0.a1 Prupe.5G205900_v2.0.a1 Prupe.5G205900_v2.0.a1
pyrus_communis	pycom06g18020 pycom111g05650 pycom13g23090 pycom17g05990
rosa_chinensis	RchiOBHm_Chr2g0165801 RchiOBHm_Chr7g0183181
rosa_laevigata	RLG00000005069 RLG00000021557
rosa_multiflora	Rmu_co8279591.1_g000001 Rmu_co8332333.1_g000001 Rmu_sc0001861.1_g000014 Rmu_sc0003227.1_g000009 Rmu_sc0006832.1_g000002 Rmu_sc0012318.1_g000002 Rmu_ssc0000111.1_g000018
rosa_roxburghii	Rroxscaffold_2G00085490 Rroxscaffold_3G00270680
rosa_rugosa	Rorug02G0517800 Rorug06G0454600
rosa_samantha	Rh2AG583500 Rh2BG595600 Rh2CG221700 Rh2CG566300 Rh2DG605400 Rh7AG057000 Rh7BG056700 Rh7CG057800 Rh7DG056600
rosa_wichuraiana	Rw2G048660 Rw7G004650

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	223
AciI	CCGC	1 cut(s)	82
AcsI	RAATTY	1 cut(s)	90
AfaI	GTAC	2 cut(s)	277, 371
AfiI	CCNNNNNNNGG	1 cut(s)	172
AgsI	TTSAA	1 cut(s)	120
AleI	CACNNNNGTG	1 cut(s)	356
AluBI	AGCT	1 cut(s)	323
AluI	AGCT	1 cut(s)	323
Alw21I	GWGCWC	1 cut(s)	8
Alw44I	GTGCAC	1 cut(s)	4
ApaLI	GTGCAC	1 cut(s)	4
ApeKI	GCWGC	1 cut(s)	320
ApoI	RAATTY	1 cut(s)	90
Asp700I	GAANNNNTTC	1 cut(s)	263
AspS9I	GGNCC	1 cut(s)	238
AsuHPI	GGTGA	3 cut(s)	69, 298, 376
AvaII	GGWCC	1 cut(s)	238
BaeGI	GKGCMC	1 cut(s)	8
Bbv12I	GWGCWC	1 cut(s)	8
BbvI	GCAGC	1 cut(s)	332
BccI	CCATC	1 cut(s)	229
BisI	GCNGC	1 cut(s)	321
BlsI	GCNGC	1 cut(s)	322
Bme18I	GGWCC	1 cut(s)	238
BmgT120I	GGNCC	1 cut(s)	238
BmiI	GGNNCC	1 cut(s)	68
Bsc4I	CCNNNNNNNGG	1 cut(s)	172
Bse3DI	GCAATG	1 cut(s)	46
BseGI	GGATG	1 cut(s)	375
BseLI	CCNNNNNNNGG	1 cut(s)	172
BseMI	GCAATG	1 cut(s)	46
BseMII	CTCAG	1 cut(s)	329
BseRI	GAGGAG	1 cut(s)	140
BseSI	GKGCMC	1 cut(s)	8
BseXI	GCAGC	1 cut(s)	332
BsiHKAI	GWGCWC	1 cut(s)	8
BsiSI	CCGG	1 cut(s)	334
BslFI	GGGAC	1 cut(s)	115
BslI	CCNNNNNNNGG	1 cut(s)	172
BsmFI	GGGAC	1 cut(s)	115
Bsp1286I	GDGCHC	1 cut(s)	8
Bsp1407I	TGTACA	1 cut(s)	369
BspACI	CCGC	1 cut(s)	82
BspCNI	CTCAG	1 cut(s)	330
BspLI	GGNNCC	1 cut(s)	68
BsrDI	GCAATG	1 cut(s)	46
BsrGI	TGTACA	1 cut(s)	369
BstAUI	TGTACA	1 cut(s)	369
BstC8I	GCNNGC	1 cut(s)	353
BstDEI	CTNAG	1 cut(s)	338
BstF5I	GGATG	1 cut(s)	375
BstSLI	GKGCMC	1 cut(s)	8
BstV1I	GCAGC	1 cut(s)	332
BtsCI	GGATG	1 cut(s)	375
BtsI	GCAGTG	1 cut(s)	144
BtsIMutI	CAGTG	1 cut(s)	144
Cac8I	GCNNGC	1 cut(s)	353
Cfr13I	GGNCC	1 cut(s)	238
Csp6I	GTAC	2 cut(s)	276, 370
CviAII	CATG	1 cut(s)	316
CviJI	RGCY	3 cut(s)	263, 323, 337
CviKI_1	RGCY	3 cut(s)	263, 323, 337
CviQI	GTAC	2 cut(s)	276, 370
DdeI	CTNAG	1 cut(s)	338
Eco47I	GGWCC	1 cut(s)	238
EcoRI	GAATTC	1 cut(s)	90
FaeI	CATG	1 cut(s)	319
FaiI	YATR	5 cut(s)	211, 306, 317, 389, 391
FalI	AAGNNNNNCTT	2 cut(s)	251, 283
FaqI	GGGAC	1 cut(s)	115
FatI	CATG	1 cut(s)	315
FauI	CCCGC	1 cut(s)	89
FblI	GTMKAC	1 cut(s)	223
Fnu4HI	GCNGC	1 cut(s)	321
FokI	GGATG	1 cut(s)	362
Fsp4HI	GCNGC	1 cut(s)	321
GluI	GCNGC	1 cut(s)	321
HapII	CCGG	1 cut(s)	334
Hin1II	CATG	1 cut(s)	319
HinfI	GANTC	3 cut(s)	43, 128, 330
HpaII	CCGG	1 cut(s)	334
HphI	GGTGA	3 cut(s)	69, 298, 376
Hpy166II	GTNNAC	2 cut(s)	6, 224
Hpy188I	TCNGA	1 cut(s)	329
Hpy188III	TCNNGA	1 cut(s)	241
Hpy8I	GTNNAC	2 cut(s)	6, 224
HpyAV	CCTTC	1 cut(s)	253
HpyCH4V	TGCA	3 cut(s)	6, 14, 149
HpyF3I	CTNAG	1 cut(s)	338
Hsp92II	CATG	1 cut(s)	319
LpnPI	CCDG	6 cut(s)	95, 179, 254, 258, 341, 347
Lsp1109I	GCAGC	1 cut(s)	332
MaeIII	GTNAC	1 cut(s)	75
MhlI	GDGCHC	1 cut(s)	8
MluCI	AATT	1 cut(s)	90
MlyI	GAGTC	3 cut(s)	52, 137, 324
MmeI	TCCRAC	1 cut(s)	182
MnlI	CCTC	5 cut(s)	118, 185, 282, 290, 389
MroXI	GAANNNNTTC	1 cut(s)	263
MseI	TTAA	1 cut(s)	347
MslI	CAYNNNNRTG	1 cut(s)	356
MspI	CCGG	1 cut(s)	334
NlaIII	CATG	1 cut(s)	319
NlaIV	GGNNCC	1 cut(s)	68
NmuCI	GTSAC	1 cut(s)	75
OliI	CACNNNNGTG	1 cut(s)	356
PdmI	GAANNNNTTC	1 cut(s)	263
PkrI	GCNGC	1 cut(s)	322
PleI	GAGTC	3 cut(s)	51, 136, 324
PpsI	GAGTC	3 cut(s)	51, 136, 324
PspN4I	GGNNCC	1 cut(s)	68
PspPI	GGNCC	1 cut(s)	238
RsaI	GTAC	2 cut(s)	277, 371
RsaNI	GTAC	2 cut(s)	276, 370
RseI	CAYNNNNRTG	1 cut(s)	356
SaqAI	TTAA	1 cut(s)	347
SatI	GCNGC	1 cut(s)	321
Sau96I	GGNCC	1 cut(s)	238
SchI	GAGTC	3 cut(s)	52, 137, 324
SduI	GDGCHC	1 cut(s)	8
SetI	ASST	3 cut(s)	277, 288, 325
SinI	GGWCC	1 cut(s)	238
SmiMI	CAYNNNNRTG	1 cut(s)	356
Sse9I	AATT	1 cut(s)	90
SsiI	CCGC	1 cut(s)	82
SspI	AATATT	1 cut(s)	39
TaqI	TCGA	1 cut(s)	94
TasI	AATT	1 cut(s)	90
TatI	WGTACW	1 cut(s)	369
Tru1I	TTAA	1 cut(s)	347
Tru9I	TTAA	1 cut(s)	347
TscAI	CASTG	1 cut(s)	151
TseFI	GTSAC	1 cut(s)	75
TseI	GCWGC	1 cut(s)	320
Tsp45I	GTSAC	1 cut(s)	75
TspDTI	ATGAA	1 cut(s)	103
TspGWI	ACGGA	1 cut(s)	137
TspRI	CASTG	1 cut(s)	151
VneI	GTGCAC	1 cut(s)	4
VpaK11BI	GGWCC	1 cut(s)	238
XapI	RAATTY	1 cut(s)	90
XmiI	GTMKAC	1 cut(s)	223
XmnI	GAANNNNTTC	1 cut(s)	263

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.