Rh7DG056600

Ninja-family protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0002373
Physical Location & Seq
Reverse (-)
4337511 .. 4341138
3628 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG056600.1

Sequence Viewer

Length: 690 bp
ATGGCGGGCGAAGAGGACCAACACGATCTCGGGCTCTCACTTGGGGGACTTTACCGAGGCAACTCGGGTGGGGCCCGCATGGCACGCGCTGTGTCGGTGGGAGTCAATGTGACTGAGGTTGCGGCGGCGCCGAGTCCCAGGGCGGTTTCTCTGCCGTCGGTTAGGGAGCTGGAGATGATGAGGGTCTCTGAGGTTCAGTTTCTGAGCAGGGCGATGGCTACAAGCCTGAGGTTGACTATTCAGGAGGAAAAGGCTAAGAAAGCTCCGGCAGCGGCGTGTATATATGGATCTGGACGCTTGGCTGCAACAAGCAACACAGTTAGTTCTGAGCTTAAGTCTGGAGAAGGGAGCTCCAATCAGCCTGTGGTCACCACGACAATGATGGCTAACACAAAAAAGGTGAAGGCTGATGACCCTGAACAAGACAGTGCAGCAAAGAGGGCTAGAGTTTATCATGGCAATGTTGTGAGGCCAATTAGGCGTGAAGGGATGGTTAGAATGCCTTCTGTGAAAACCATTGGGGCTGATGGGAAGAAAGTGGAAGGGTACCTGTACAAGTATCTTGAAGGAAAAGTGCGGATTGTATGTGCTTGCCATGGGACTTTCCAGTCCCCAGCGGAGTTCGTCAAGCATGCCGGTGGCAATGAGGTCGCCAATCCTTTGAAGCAAATCACTGTTTCCCTTGATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04062 ko04144 ko04520 ko04530 ko04666 ko04810 ko05100 ko05130 ko05131 ko05132 ko05231 map04062 map04144 map04520 map04530 map04666 map04810 map05100 map05130 map05131 map05132 map05231
Pfam Domains
Protein Families
EAR Jas NINJA_B

Protein Analysis

229

Amino Acids

24.38

Weight (kDa)

9.46

Isoelectric Point (pI)

42.05

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TDBD PF16135 193 - 225 2.2e-07 Tify domain binding domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 607
Acc65I GGTACC 1 cut(s) 546
AccB1I GGYRCC 2 cut(s) 127, 546
AccII CGCG 1 cut(s) 87
AciI CCGC 8 cut(s) 5, 76, 122, 125, 143, 272, 577, 617
AclWI GGATC 1 cut(s) 295
AcyI GRCGYC 1 cut(s) 128
AfaI GTAC 2 cut(s) 548, 554
AflII CTTAAG 1 cut(s) 332
AgsI TTSAA 2 cut(s) 566, 664
AjnI CCWGG 1 cut(s) 137
AluBI AGCT 4 cut(s) 169, 263, 331, 351
AluI AGCT 4 cut(s) 169, 263, 331, 351
Alw21I GWGCWC 1 cut(s) 353
Alw26I GTCTC 1 cut(s) 190
AlwI GGATC 1 cut(s) 295
AlwNI CAGNNNCTG 1 cut(s) 202
Ama87I CYCGRG 2 cut(s) 29, 64
AoxI GGCC 2 cut(s) 72, 470
ApaI GGGCCC 1 cut(s) 76
ApeKI GCWGC 3 cut(s) 269, 302, 431
Asp700I GAANNNNTTC 1 cut(s) 502
Asp718I GGTACC 1 cut(s) 546
AspLEI GCGC 2 cut(s) 89, 130
AspS9I GGNCC 3 cut(s) 16, 72, 73
AsuHPI GGTGA 2 cut(s) 361, 412
AvaI CYCGRG 2 cut(s) 29, 64
AvaII GGWCC 1 cut(s) 16
AxyI CCTNAGG 1 cut(s) 227
BaeGI GKGCMC 1 cut(s) 76
BanI GGYRCC 2 cut(s) 127, 546
BanII GRGCYC 3 cut(s) 36, 76, 353
Bbv12I GWGCWC 1 cut(s) 353
BbvI GCAGC 3 cut(s) 281, 289, 443
BccI CCATC 4 cut(s) 208, 376, 484, 521
BceAI ACGGC 1 cut(s) 139
BcgI CGANNNNNNTGC 2 cut(s) 631, 665
BciT130I CCWGG 1 cut(s) 139
BcoDI GTCTC 1 cut(s) 190
BfaI CTAG 1 cut(s) 444
BfoI RGCGCY 1 cut(s) 131
BfrI CTTAAG 1 cut(s) 332
BglI GCCNNNNNGGC 2 cut(s) 80, 478
BisI GCNGC 6 cut(s) 123, 126, 270, 273, 303, 432
BlsI GCNGC 6 cut(s) 124, 127, 271, 274, 304, 433
Bme1390I CCNGG 1 cut(s) 139
Bme18I GGWCC 1 cut(s) 16
BmeT110I CYCGRG 2 cut(s) 29, 64
BmgT120I GGNCC 3 cut(s) 16, 72, 73
BmiI GGNNCC 4 cut(s) 73, 74, 129, 548
BmrFI CCNGG 1 cut(s) 139
BpmI CTGGAG 2 cut(s) 191, 360
BsaHI GRCGYC 1 cut(s) 128
BsaI GGTCTC 1 cut(s) 190
BsaJI CCNNGG 4 cut(s) 55, 137, 138, 595
BsaXI ACNNNNNCTCC 2 cut(s) 93, 123
Bse118I RCCGGY 1 cut(s) 635
Bse1I ACTGG 1 cut(s) 607
Bse21I CCTNAGG 1 cut(s) 227
Bse3DI GCAATG 2 cut(s) 466, 649
BseBI CCWGG 1 cut(s) 139
BseDI CCNNGG 4 cut(s) 55, 137, 138, 595
BseGI GGATG 1 cut(s) 495
BseMI GCAATG 2 cut(s) 466, 649
BseMII CTCAG 5 cut(s) 105, 180, 194, 218, 318
BseNI ACTGG 1 cut(s) 607
BseSI GKGCMC 1 cut(s) 76
BseXI GCAGC 3 cut(s) 281, 289, 443
BseYI CCCAGC 1 cut(s) 613
BsgI GTGCAG 1 cut(s) 450
Bsh1236I CGCG 1 cut(s) 87
BshFI GGCC 2 cut(s) 74, 472
BshNI GGYRCC 2 cut(s) 127, 546
BsiHKAI GWGCWC 1 cut(s) 353
BsiHKCI CYCGRG 2 cut(s) 29, 64
BsiSI CCGG 2 cut(s) 266, 636
BslFI GGGAC 4 cut(s) 60, 120, 595, 613
BsmAI GTCTC 1 cut(s) 190
BsmFI GGGAC 4 cut(s) 60, 120, 595, 613
BsmI GAATGC 1 cut(s) 504
BsnI GGCC 2 cut(s) 74, 472
Bso31I GGTCTC 1 cut(s) 190
BsoBI CYCGRG 2 cut(s) 29, 64
Bsp120I GGGCCC 1 cut(s) 72
Bsp1286I GDGCHC 3 cut(s) 36, 76, 353
Bsp1407I TGTACA 1 cut(s) 552
Bsp143I GATC 2 cut(s) 25, 287
Bsp19I CCATGG 1 cut(s) 595
BspACI CCGC 8 cut(s) 5, 76, 122, 125, 143, 272, 577, 617
BspANI GGCC 2 cut(s) 74, 472
BspCNI CTCAG 5 cut(s) 106, 181, 195, 219, 319
BspFNI CGCG 1 cut(s) 87
BspLI GGNNCC 4 cut(s) 73, 74, 129, 548
BspPI GGATC 1 cut(s) 295
BspT107I GGYRCC 2 cut(s) 127, 546
BspTI CTTAAG 1 cut(s) 332
BspTNI GGTCTC 1 cut(s) 190
BsrDI GCAATG 2 cut(s) 466, 649
BsrFI RCCGGY 1 cut(s) 635
BsrGI TGTACA 1 cut(s) 552
BsrI ACTGG 1 cut(s) 607
BssAI RCCGGY 1 cut(s) 635
BssECI CCNNGG 4 cut(s) 55, 137, 138, 595
BssMI GATC 2 cut(s) 25, 287
BssNI GRCGYC 1 cut(s) 128
BssT1I CCWWGG 1 cut(s) 595
Bst2UI CCWGG 1 cut(s) 139
Bst4CI ACNGT 3 cut(s) 319, 428, 676
Bst6I CTCTTC 1 cut(s) 6
BstACI GRCGYC 1 cut(s) 128
BstAFI CTTAAG 1 cut(s) 332
BstAUI TGTACA 1 cut(s) 552
BstC8I GCNNGC 5 cut(s) 7, 76, 85, 592, 633
BstDEI CTNAG 6 cut(s) 114, 189, 203, 227, 255, 327
BstDSI CCRYGG 1 cut(s) 595
BstEII GGTNACC 1 cut(s) 367
BstF5I GGATG 1 cut(s) 495
BstFNI CGCG 1 cut(s) 87
BstH2I RGCGCY 1 cut(s) 131
BstHHI GCGC 2 cut(s) 89, 130
BstKTI GATC 2 cut(s) 28, 290
BstMAI GTCTC 1 cut(s) 190
BstMBI GATC 2 cut(s) 25, 287
BstMWI GCNNNNNNNGC 6 cut(s) 80, 84, 260, 269, 440, 478
BstNI CCWGG 1 cut(s) 139
BstNSI RCATGY 1 cut(s) 635
BstPI GGTNACC 1 cut(s) 367
BstSCI CCNGG 1 cut(s) 137
BstSLI GKGCMC 1 cut(s) 76
BstUI CGCG 1 cut(s) 87
BstV1I GCAGC 3 cut(s) 281, 289, 443
BstX2I RGATCY 1 cut(s) 287
BstYI RGATCY 1 cut(s) 287
Bsu36I CCTNAGG 1 cut(s) 227
BsuRI GGCC 2 cut(s) 74, 472
BtgI CCRYGG 1 cut(s) 595
BtgZI GCGATG 1 cut(s) 227
BtsCI GGATG 1 cut(s) 495
BtsIMutI CAGTG 2 cut(s) 433, 672
Cac8I GCNNGC 5 cut(s) 7, 76, 85, 592, 633
CaiI CAGNNNCTG 1 cut(s) 202
CfoI GCGC 2 cut(s) 89, 130
Cfr10I RCCGGY 1 cut(s) 635
Cfr13I GGNCC 3 cut(s) 16, 72, 73
CseI GACGC 1 cut(s) 303
Csp6I GTAC 2 cut(s) 547, 553
CspCI CAANNNNNGTGG 2 cut(s) 49, 84
CviAII CATG 4 cut(s) 79, 455, 596, 632
CviQI GTAC 2 cut(s) 547, 553
DdeI CTNAG 6 cut(s) 114, 189, 203, 227, 255, 327
DinI GGCGCC 1 cut(s) 129
DpnI GATC 2 cut(s) 27, 289
DpnII GATC 2 cut(s) 25, 287
DrdI GACNNNNNNGTC 1 cut(s) 607
DseDI GACNNNNNNGTC 1 cut(s) 607
Eam1104I CTCTTC 1 cut(s) 6
EarI CTCTTC 1 cut(s) 6
Ecl136II GAGCTC 1 cut(s) 351
Eco130I CCWWGG 1 cut(s) 595
Eco24I GRGCYC 3 cut(s) 36, 76, 353
Eco31I GGTCTC 1 cut(s) 190
Eco47I GGWCC 1 cut(s) 16
Eco53kI GAGCTC 1 cut(s) 351
Eco81I CCTNAGG 1 cut(s) 227
Eco88I CYCGRG 2 cut(s) 29, 64
Eco91I GGTNACC 1 cut(s) 367
EcoICRI GAGCTC 1 cut(s) 351
EcoO109I RGGNCCY 1 cut(s) 72
EcoO65I GGTNACC 1 cut(s) 367
EcoRII CCWGG 1 cut(s) 137
EcoT14I CCWWGG 1 cut(s) 595
EcoT38I GRGCYC 3 cut(s) 36, 76, 353
EgeI GGCGCC 1 cut(s) 129
EheI GGCGCC 1 cut(s) 129
ErhI CCWWGG 1 cut(s) 595
FaeI CATG 4 cut(s) 82, 458, 599, 635
FaiI YATR 8 cut(s) 80, 281, 283, 285, 456, 586, 597, 633
FaqI GGGAC 4 cut(s) 60, 120, 595, 613
FatI CATG 4 cut(s) 78, 454, 595, 631
FauI CCCGC 1 cut(s) 83
Fnu4HI GCNGC 6 cut(s) 123, 126, 270, 273, 303, 432
FokI GGATG 1 cut(s) 502
FriOI GRGCYC 3 cut(s) 36, 76, 353
Fsp4HI GCNGC 6 cut(s) 123, 126, 270, 273, 303, 432
FspBI CTAG 1 cut(s) 444
GlaI GCGC 2 cut(s) 88, 129
GluI GCNGC 6 cut(s) 123, 126, 270, 273, 303, 432
GsaI CCCAGC 1 cut(s) 617
GsuI CTGGAG 2 cut(s) 191, 360
HaeII RGCGCY 1 cut(s) 131
HaeIII GGCC 2 cut(s) 74, 472
HapII CCGG 2 cut(s) 266, 636
HgaI GACGC 1 cut(s) 303
HhaI GCGC 2 cut(s) 89, 130
Hin1I GRCGYC 1 cut(s) 128
Hin1II CATG 4 cut(s) 82, 458, 599, 635
Hin6I GCGC 2 cut(s) 87, 128
HinP1I GCGC 2 cut(s) 87, 128
HincII GTYRAC 1 cut(s) 234
HindII GTYRAC 1 cut(s) 234
HinfI GANTC 2 cut(s) 102, 133
HpaII CCGG 2 cut(s) 266, 636
HphI GGTGA 2 cut(s) 361, 412
Hpy166II GTNNAC 1 cut(s) 234
Hpy188I TCNGA 3 cut(s) 190, 204, 328
Hpy188III TCNNGA 4 cut(s) 242, 291, 339, 563
Hpy8I GTNNAC 1 cut(s) 234
Hpy99I CGWCG 1 cut(s) 160
HpyAV CCTTC 6 cut(s) 338, 397, 479, 513, 536, 560
HpyCH4III ACNGT 3 cut(s) 319, 428, 676
HpyCH4V TGCA 2 cut(s) 305, 431
HpyF10VI GCNNNNNNNGC 6 cut(s) 80, 84, 260, 269, 440, 478
HpyF3I CTNAG 6 cut(s) 114, 189, 203, 227, 255, 327
Hsp92I GRCGYC 1 cut(s) 128
Hsp92II CATG 4 cut(s) 82, 458, 599, 635
HspAI GCGC 2 cut(s) 87, 128
KasI GGCGCC 1 cut(s) 127
KpnI GGTACC 1 cut(s) 550
Kzo9I GATC 2 cut(s) 25, 287
LmnI GCTCC 4 cut(s) 166, 268, 348, 356
Lsp1109I GCAGC 3 cut(s) 281, 289, 443
MaeI CTAG 1 cut(s) 444
MaeIII GTNAC 2 cut(s) 109, 367
MalI GATC 2 cut(s) 27, 289
MboI GATC 2 cut(s) 25, 287
MboII GAAGA 2 cut(s) 23, 544
MflI RGATCY 1 cut(s) 287
MhlI GDGCHC 3 cut(s) 36, 76, 353
MluCI AATT 1 cut(s) 474
Mly113I GGCGCC 1 cut(s) 128
MlyI GAGTC 2 cut(s) 111, 142
MroXI GAANNNNTTC 1 cut(s) 502
MseI TTAA 2 cut(s) 333, 688
MslI CAYNNNNRTG 3 cut(s) 377, 459, 636
MspA1I CMGCKG 2 cut(s) 272, 617
MspCI CTTAAG 1 cut(s) 332
MspI CCGG 2 cut(s) 266, 636
MspR9I CCNGG 1 cut(s) 139
Mva1269I GAATGC 1 cut(s) 504
MvaI CCWGG 1 cut(s) 139
MvnI CGCG 1 cut(s) 87
MwoI GCNNNNNNNGC 6 cut(s) 80, 84, 260, 269, 440, 478
NarI GGCGCC 1 cut(s) 128
NcoI CCATGG 1 cut(s) 595
NdeII GATC 2 cut(s) 25, 287
NlaIII CATG 4 cut(s) 82, 458, 599, 635
NlaIV GGNNCC 4 cut(s) 73, 74, 129, 548
NmeAIII GCCGAG 1 cut(s) 156
NmuCI GTSAC 2 cut(s) 109, 367
NspI RCATGY 1 cut(s) 635
PaeI GCATGC 1 cut(s) 635
PasI CCCWGGG 1 cut(s) 138
PctI GAATGC 1 cut(s) 504
PdmI GAANNNNTTC 1 cut(s) 502
PkrI GCNGC 6 cut(s) 124, 127, 271, 274, 304, 433
PleI GAGTC 2 cut(s) 110, 141
PluTI GGCGCC 1 cut(s) 131
PpsI GAGTC 2 cut(s) 110, 141
Psp124BI GAGCTC 1 cut(s) 353
Psp6I CCWGG 1 cut(s) 137
PspEI GGTNACC 1 cut(s) 367
PspFI CCCAGC 1 cut(s) 613
PspGI CCWGG 1 cut(s) 137
PspN4I GGNNCC 4 cut(s) 73, 74, 129, 548
PspOMI GGGCCC 1 cut(s) 72
PspPI GGNCC 3 cut(s) 16, 72, 73
PstNI CAGNNNCTG 1 cut(s) 202
PsuI RGATCY 1 cut(s) 287
RsaI GTAC 2 cut(s) 548, 554
RsaNI GTAC 2 cut(s) 547, 553
RseI CAYNNNNRTG 3 cut(s) 377, 459, 636
SacI GAGCTC 1 cut(s) 353
SaqAI TTAA 2 cut(s) 333, 688
SatI GCNGC 6 cut(s) 123, 126, 270, 273, 303, 432
Sau3AI GATC 2 cut(s) 25, 287
Sau96I GGNCC 3 cut(s) 16, 72, 73
SchI GAGTC 2 cut(s) 111, 142
ScrFI CCNGG 1 cut(s) 139
SduI GDGCHC 3 cut(s) 36, 76, 353
SfoI GGCGCC 1 cut(s) 129
SinI GGWCC 1 cut(s) 16
SmiMI CAYNNNNRTG 3 cut(s) 377, 459, 636
SmlI CTYRAG 1 cut(s) 332
SmoI CTYRAG 1 cut(s) 332
SphI GCATGC 1 cut(s) 635
Sse9I AATT 1 cut(s) 474
SsiI CCGC 8 cut(s) 5, 76, 122, 125, 143, 272, 577, 617
SspDI GGCGCC 1 cut(s) 127
SspMI CTAG 1 cut(s) 444
SstI GAGCTC 1 cut(s) 353
StyD4I CCNGG 1 cut(s) 137
StyI CCWWGG 1 cut(s) 595
TaaI ACNGT 3 cut(s) 319, 428, 676
TasI AATT 1 cut(s) 474
TatI WGTACW 1 cut(s) 552
TauI GCSGC 3 cut(s) 125, 128, 275
Tru1I TTAA 2 cut(s) 333, 688
Tru9I TTAA 2 cut(s) 333, 688
TscAI CASTG 2 cut(s) 433, 679
TseFI GTSAC 2 cut(s) 109, 367
TseI GCWGC 3 cut(s) 269, 302, 431
Tsp45I GTSAC 2 cut(s) 109, 367
TspRI CASTG 2 cut(s) 433, 679
Vha464I CTTAAG 1 cut(s) 332
VpaK11BI GGWCC 1 cut(s) 16
XceI RCATGY 1 cut(s) 635
XcmI CCANNNNNNNNNTGG 2 cut(s) 361, 379
XmnI GAANNNNTTC 1 cut(s) 502
XspI CTAG 1 cut(s) 444
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.