Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr11

Orthogroup ID

OG0006472

Physical Location & Seq

Genomic Coordinates Reverse (-)

823344 .. 826569

Gene Structure 3226 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD11G1011000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 528 bp

ATGGCTCCCCATCTGGGTCTGATCCCGATCCTCCTCTTCTTTCTCTCCGTCCTCCCAAGTCTCTCTCTTTCTCTCTCTAACTCCCCACCCACAGTCTTCGACATTTTACCCGAATACGGCCTCCCCCGCGGTCTCTTACCGTCGTCGGTCTCCAACTACACGCTCTCCGACGACGGCGGATTCGTCGTCGTTTTGCCCAAGACCTGCTACATTCAGTTCGATTACTTGGTCTACTACGAAAAGACCATAACGGGCAAGCTCACATACGGGGCGATCACCGACTTGAAGGGGATTCAGGTCCAGAGGTTCTTGTTCTGGTTCGACGTCGACGAGATCAGGGTCGATTTGCCGCCGTCCGATAGCATTTACTTCACTGTTGGGATCATCAACAAGAAGCTCGACGTCGATCAGTTTGAAAATGTCCGGTCTTGCCGTGACGGGTTATCGGGTTCTTGCGTCGGGTCGTTCAAACGGGGCATTCAGCTTCCAACCCCAGTGGAAGAAATTGAGATGCTAATTACCGAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF538

Protein Analysis

176

Amino Acids

19.52

Weight (kDa)

4.65

Isoelectric Point (pI)

39.75

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF538	PF04398	34 - 139	4e-31	Protein of unknown function, DUF538

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0006472)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G19860
fragaria_vesca	FvH4_3g44860
malus_domestica	MD03G1007800.v1.1 MD11G1011000.v1.1
prunus_persica	Prupe.6G009800_v2.0.a1
pyrus_communis	pycom03g00800 pycom11g00690
rosa_chinensis	RchiOBHm_Chr5g0081571
rosa_laevigata	RLG00000036949 RLG00000036952
rosa_multiflora	Rmu_sc0002176.1_g000001 Rmu_sc0002245.1_g000027 Rmu_sc0002245.1_g000034 Rmu_sc0002706.1_g000006 Rmu_sc0002706.1_g000011 Rmu_sc0002706.1_g000017
rosa_roxburghii	Rroxscaffold_1G00001980
rosa_rugosa	Rorug05G0477400
rosa_samantha	Rh5AG528800 Rh5BG553500 Rh5BG553700 Rh5CG576500 Rh5CG576600 Rh5DG563700 Rh5DG563800
rosa_wichuraiana	Rw5G049200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	2 cut(s)	327, 405
Acc36I	ACCTGC	1 cut(s)	212
AccI	GTMKAC	2 cut(s)	231, 327
AccII	CGCG	1 cut(s)	129
AciI	CCGC	4 cut(s)	127, 129, 177, 350
AclWI	GGATC	3 cut(s)	16, 22, 389
AcyI	GRCGYC	2 cut(s)	324, 402
AfiI	CCNNNNNNNGG	2 cut(s)	14, 116
AgsI	TTSAA	3 cut(s)	286, 416, 469
AluBI	AGCT	3 cut(s)	259, 397, 484
AluI	AGCT	3 cut(s)	259, 397, 484
Alw26I	GTCTC	3 cut(s)	65, 137, 154
AlwI	GGATC	3 cut(s)	16, 22, 389
AoxI	GGCC	1 cut(s)	118
ArsI	GACNNNNNNTTYG	2 cut(s)	164, 196
AspS9I	GGNCC	1 cut(s)	298
AsuHPI	GGTGA	1 cut(s)	268
AvaII	GGWCC	1 cut(s)	298
BbsI	GAAGAC	1 cut(s)	88
BccI	CCATC	1 cut(s)	18
BceAI	ACGGC	4 cut(s)	133, 190, 337, 417
BcoDI	GTCTC	3 cut(s)	65, 137, 154
BfuAI	ACCTGC	1 cut(s)	212
BisI	GCNGC	1 cut(s)	350
BlsI	GCNGC	1 cut(s)	351
Bme18I	GGWCC	1 cut(s)	298
BmgT120I	GGNCC	1 cut(s)	298
BmiI	GGNNCC	1 cut(s)	6
BmrI	ACTGGG	1 cut(s)	488
BmsI	GCATC	1 cut(s)	501
BmuI	ACTGGG	1 cut(s)	488
BpiI	GAAGAC	1 cut(s)	88
BsaBI	GATNNNNATC	1 cut(s)	26
BsaHI	GRCGYC	2 cut(s)	324, 402
BsaI	GGTCTC	2 cut(s)	137, 154
BsaJI	CCNNGG	1 cut(s)	127
BsaWI	WCCGGW	1 cut(s)	423
BsaXI	ACNNNNNCTCC	2 cut(s)	149, 179
Bsc4I	CCNNNNNNNGG	2 cut(s)	14, 116
Bse1I	ACTGG	1 cut(s)	494
Bse8I	GATNNNNATC	1 cut(s)	26
BseDI	CCNNGG	1 cut(s)	127
BseJI	GATNNNNATC	1 cut(s)	26
BseLI	CCNNNNNNNGG	2 cut(s)	14, 116
BseNI	ACTGG	1 cut(s)	494
BseRI	GAGGAG	1 cut(s)	23
Bsh1236I	CGCG	1 cut(s)	129
BshFI	GGCC	1 cut(s)	120
BsiSI	CCGG	1 cut(s)	424
BslI	CCNNNNNNNGG	2 cut(s)	14, 116
BsmAI	GTCTC	3 cut(s)	65, 137, 154
BsmI	GAATGC	1 cut(s)	477
BsnI	GGCC	1 cut(s)	120
Bso31I	GGTCTC	2 cut(s)	137, 154
Bsp143I	GATC	6 cut(s)	21, 27, 273, 333, 381, 406
BspACI	CCGC	4 cut(s)	127, 129, 177, 350
BspANI	GGCC	1 cut(s)	120
BspFNI	CGCG	1 cut(s)	129
BspLI	GGNNCC	1 cut(s)	6
BspMI	ACCTGC	1 cut(s)	212
BspPI	GGATC	3 cut(s)	16, 22, 389
BspTNI	GGTCTC	2 cut(s)	137, 154
BsrI	ACTGG	1 cut(s)	494
BssECI	CCNNGG	1 cut(s)	127
BssMI	GATC	6 cut(s)	21, 27, 273, 333, 381, 406
BssNI	GRCGYC	2 cut(s)	324, 402
Bst4CI	ACNGT	3 cut(s)	94, 141, 376
Bst6I	CTCTTC	1 cut(s)	41
BstACI	GRCGYC	2 cut(s)	324, 402
BstC8I	GCNNGC	1 cut(s)	257
BstDSI	CCRYGG	1 cut(s)	127
BstFNI	CGCG	1 cut(s)	129
BstKTI	GATC	6 cut(s)	24, 30, 276, 336, 384, 409
BstMAI	GTCTC	3 cut(s)	65, 137, 154
BstMBI	GATC	6 cut(s)	21, 27, 273, 333, 381, 406
BstMWI	GCNNNNNNNGC	1 cut(s)	126
BstUI	CGCG	1 cut(s)	129
BstV2I	GAAGAC	1 cut(s)	88
BsuRI	GGCC	1 cut(s)	120
BtgI	CCRYGG	1 cut(s)	127
BtsIMutI	CAGTG	2 cut(s)	372, 501
BveI	ACCTGC	1 cut(s)	212
Cac8I	GCNNGC	1 cut(s)	257
Cfr13I	GGNCC	1 cut(s)	298
Cfr42I	CCGCGG	1 cut(s)	130
CseI	GACGC	1 cut(s)	445
CspCI	CAANNNNNGTGG	2 cut(s)	477, 512
CviJI	RGCY	5 cut(s)	5, 120, 259, 397, 484
CviKI_1	RGCY	5 cut(s)	5, 120, 259, 397, 484
DpnI	GATC	6 cut(s)	23, 29, 275, 335, 383, 408
DpnII	GATC	6 cut(s)	21, 27, 273, 333, 381, 406
Eam1104I	CTCTTC	1 cut(s)	41
EarI	CTCTTC	1 cut(s)	41
EciI	GGCGGA	1 cut(s)	192
Eco31I	GGTCTC	2 cut(s)	137, 154
Eco47I	GGWCC	1 cut(s)	298
FaiI	YATR	2 cut(s)	248, 265
FauI	CCCGC	1 cut(s)	134
FblI	GTMKAC	2 cut(s)	231, 327
Fnu4HI	GCNGC	1 cut(s)	350
Fsp4HI	GCNGC	1 cut(s)	350
GluI	GCNGC	1 cut(s)	350
HaeIII	GGCC	1 cut(s)	120
HapII	CCGG	1 cut(s)	424
HgaI	GACGC	1 cut(s)	445
Hin1I	GRCGYC	2 cut(s)	324, 402
HincII	GTYRAC	1 cut(s)	328
HindII	GTYRAC	1 cut(s)	328
HinfI	GANTC	2 cut(s)	180, 292
HpaII	CCGG	1 cut(s)	424
HphI	GGTGA	1 cut(s)	268
Hpy166II	GTNNAC	2 cut(s)	232, 328
Hpy188I	TCNGA	3 cut(s)	21, 169, 358
Hpy188III	TCNNGA	2 cut(s)	25, 301
Hpy8I	GTNNAC	2 cut(s)	232, 328
HpyAV	CCTTC	1 cut(s)	280
HpyCH4III	ACNGT	3 cut(s)	94, 141, 376
HpyCH4IV	ACGT	2 cut(s)	324, 402
HpyF10VI	GCNNNNNNNGC	1 cut(s)	126
HpySE526I	ACGT	2 cut(s)	324, 402
Hsp92I	GRCGYC	2 cut(s)	324, 402
KspI	CCGCGG	1 cut(s)	130
Kzo9I	GATC	6 cut(s)	21, 27, 273, 333, 381, 406
LmnI	GCTCC	1 cut(s)	10
LpnPI	CCDG	7 cut(s)	217, 281, 301, 314, 322, 437, 507
LweI	GCATC	1 cut(s)	501
MaeII	ACGT	2 cut(s)	324, 402
MaeIII	GTNAC	1 cut(s)	434
MalI	GATC	6 cut(s)	23, 29, 275, 335, 383, 408
MboI	GATC	6 cut(s)	21, 27, 273, 333, 381, 406
MboII	GAAGA	3 cut(s)	28, 88, 512
MluCI	AATT	2 cut(s)	504, 516
MmeI	TCCRAC	3 cut(s)	177, 192, 512
MnlI	CCTC	5 cut(s)	41, 44, 62, 131, 297
MspA1I	CMGCKG	1 cut(s)	129
MspI	CCGG	1 cut(s)	424
Mva1269I	GAATGC	1 cut(s)	477
MvnI	CGCG	1 cut(s)	129
MwoI	GCNNNNNNNGC	1 cut(s)	126
NdeII	GATC	6 cut(s)	21, 27, 273, 333, 381, 406
NlaIV	GGNNCC	1 cut(s)	6
NmuCI	GTSAC	1 cut(s)	434
PcsI	WCGNNNNNNNCGW	2 cut(s)	180, 327
PctI	GAATGC	1 cut(s)	477
PfeI	GAWTC	2 cut(s)	180, 292
PkrI	GCNGC	1 cut(s)	351
PspN4I	GGNNCC	1 cut(s)	6
PspPI	GGNCC	1 cut(s)	298
SacII	CCGCGG	1 cut(s)	130
SalI	GTCGAC	1 cut(s)	326
SatI	GCNGC	1 cut(s)	350
Sau3AI	GATC	6 cut(s)	21, 27, 273, 333, 381, 406
Sau96I	GGNCC	1 cut(s)	298
SetI	ASST	8 cut(s)	206, 261, 300, 308, 327, 399, 405, 486
SfaNI	GCATC	1 cut(s)	501
Sfr303I	CCGCGG	1 cut(s)	130
SgrBI	CCGCGG	1 cut(s)	130
SgrDI	CGTCGACG	1 cut(s)	326
SinI	GGWCC	1 cut(s)	298
Sse9I	AATT	2 cut(s)	504, 516
SsiI	CCGC	4 cut(s)	127, 129, 177, 350
TaaI	ACNGT	3 cut(s)	94, 141, 376
TaiI	ACGT	2 cut(s)	327, 405
TaqI	TCGA	7 cut(s)	99, 219, 321, 327, 342, 399, 405
TaqII	GACCGA	1 cut(s)	136
TasI	AATT	2 cut(s)	504, 516
TauI	GCSGC	1 cut(s)	352
TfiI	GAWTC	2 cut(s)	180, 292
TscAI	CASTG	2 cut(s)	379, 501
TseFI	GTSAC	1 cut(s)	434
Tsp45I	GTSAC	1 cut(s)	434
TspGWI	ACGGA	1 cut(s)	37
TspRI	CASTG	2 cut(s)	379, 501
VpaK11BI	GGWCC	1 cut(s)	298
XmiI	GTMKAC	2 cut(s)	231, 327
ZraI	GACGTC	2 cut(s)	325, 403

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.