Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002706.1

Orthogroup ID

OG0006472

Physical Location & Seq

Genomic Coordinates Forward (+)

27856 .. 29722

Gene Structure 1867 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002706.1_g000006.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 570 bp

atggctccatttccaaaaccccatccgggtctaatcccaatcctcctcctcctcctcctctccaccgccgcaagcccctctctttctctctcctccgactcctccgcctcggtcttcgagctcttacccaaatatgggctccccagtgggctcctacccgcctcggtttccaactacacgttgtccgccgacgacggccgattcgtcgtcgttttggagaagccgtgctatatccagttcgagtacttggtgtactacgagacccacatcaccggaaagctgagctacggcgcgatcacggagctgaagggcattcaggtccaaagattgttcttttggttcgacgtcgatgagatcagggtcgatttgccgccgtccgatagtatttacttcaccgttgggatcatcaacaagaagctcgatgtcgatcagttccagagcgtccattcttgccgggacgggctttcgggttcgggttcgggttcgggttcttgcctcgggtcgttgaaacgggtcattcagcttccatctccactggaagaagagataaagatgctacttactgagtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF538

Protein Analysis

189

Amino Acids

20.66

Weight (kDa)

5.04

Isoelectric Point (pI)

44.2

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006472)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G19860
fragaria_vesca	FvH4_3g44860
malus_domestica	MD03G1007800.v1.1 MD11G1011000.v1.1
prunus_persica	Prupe.6G009800_v2.0.a1
pyrus_communis	pycom03g00800 pycom11g00690
rosa_chinensis	RchiOBHm_Chr5g0081571
rosa_laevigata	RLG00000036949 RLG00000036952
rosa_multiflora	Rmu_sc0002176.1_g000001 Rmu_sc0002245.1_g000027 Rmu_sc0002245.1_g000034 Rmu_sc0002706.1_g000006 Rmu_sc0002706.1_g000011 Rmu_sc0002706.1_g000017
rosa_roxburghii	Rroxscaffold_1G00001980
rosa_rugosa	Rorug05G0477400
rosa_samantha	Rh5AG528800 Rh5BG553500 Rh5BG553700 Rh5CG576500 Rh5CG576600 Rh5DG563700 Rh5DG563800
rosa_wichuraiana	Rw5G049200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	348
AccII	CGCG	1 cut(s)	293
AciI	CCGC	6 cut(s)	66, 69, 105, 159, 186, 371
AclWI	GGATC	1 cut(s)	410
AcoI	YGGCCR	1 cut(s)	196
AcuI	CTGAAG	1 cut(s)	326
AcyI	GRCGYC	1 cut(s)	345
AfaI	GTAC	2 cut(s)	245, 254
AfiI	CCNNNNNNNGG	3 cut(s)	26, 134, 135
AflIII	ACRYGT	1 cut(s)	177
AgsI	TTSAA	1 cut(s)	508
AluBI	AGCT	6 cut(s)	121, 280, 285, 304, 418, 523
AluI	AGCT	6 cut(s)	121, 280, 285, 304, 418, 523
Alw21I	GWGCWC	1 cut(s)	123
Alw26I	GTCTC	1 cut(s)	254
AlwI	GGATC	1 cut(s)	410
Ama87I	CYCGRG	1 cut(s)	497
AoxI	GGCC	1 cut(s)	196
ArsI	GACNNNNNNTTYG	2 cut(s)	185, 217
AspLEI	GCGC	1 cut(s)	293
AspS9I	GGNCC	1 cut(s)	319
AsuC2I	CCSGG	2 cut(s)	27, 455
AsuHPI	GGTGA	2 cut(s)	262, 385
AvaI	CYCGRG	1 cut(s)	497
AvaII	GGWCC	1 cut(s)	319
BanII	GRGCYC	3 cut(s)	123, 141, 153
BbsI	GAAGAC	1 cut(s)	106
Bbv12I	GWGCWC	1 cut(s)	123
BccI	CCATC	2 cut(s)	30, 535
BceAI	ACGGC	4 cut(s)	208, 211, 304, 358
BcnI	CCSGG	2 cut(s)	27, 455
BcoDI	GTCTC	1 cut(s)	254
BisI	GCNGC	2 cut(s)	69, 371
BlpI	GCTNAGC	1 cut(s)	281
BlsI	GCNGC	2 cut(s)	70, 372
BmcAI	AGTACT	1 cut(s)	245
Bme1390I	CCNGG	2 cut(s)	27, 455
Bme18I	GGWCC	1 cut(s)	319
BmeT110I	CYCGRG	1 cut(s)	497
BmgT120I	GGNCC	1 cut(s)	319
BmiI	GGNNCC	3 cut(s)	6, 140, 152
BmrFI	CCNGG	2 cut(s)	27, 455
BmrI	ACTGGG	1 cut(s)	138
BmsI	GCATC	1 cut(s)	543
BmuI	ACTGGG	1 cut(s)	138
BpiI	GAAGAC	1 cut(s)	106
Bpu1102I	GCTNAGC	1 cut(s)	281
BpuMI	CCSGG	2 cut(s)	27, 455
BsaBI	GATNNNNATC	1 cut(s)	426
BsaHI	GRCGYC	1 cut(s)	345
BsaI	GGTCTC	1 cut(s)	254
BsaJI	CCNNGG	3 cut(s)	108, 162, 496
BsaWI	WCCGGW	1 cut(s)	272
BsaXI	ACNNNNNCTCC	2 cut(s)	209, 239
Bsc4I	CCNNNNNNNGG	3 cut(s)	26, 134, 135
Bse1I	ACTGG	3 cut(s)	144, 235, 540
Bse8I	GATNNNNATC	1 cut(s)	426
BseDI	CCNNGG	3 cut(s)	108, 162, 496
BseGI	GGATG	1 cut(s)	22
BseJI	GATNNNNATC	1 cut(s)	426
BseLI	CCNNNNNNNGG	3 cut(s)	26, 134, 135
BseMII	CTCAG	2 cut(s)	272, 555
BseNI	ACTGG	3 cut(s)	144, 235, 540
BseRI	GAGGAG	7 cut(s)	35, 38, 41, 44, 47, 82, 91
BseX3I	CGGCCG	1 cut(s)	196
Bsh1236I	CGCG	1 cut(s)	293
Bsh1285I	CGRYCG	1 cut(s)	199
BshFI	GGCC	1 cut(s)	198
BsiEI	CGRYCG	1 cut(s)	199
BsiHKAI	GWGCWC	1 cut(s)	123
BsiHKCI	CYCGRG	1 cut(s)	497
BsiSI	CCGG	3 cut(s)	26, 273, 454
BslFI	GGGAC	1 cut(s)	470
BslI	CCNNNNNNNGG	3 cut(s)	26, 134, 135
BsmAI	GTCTC	1 cut(s)	254
BsmFI	GGGAC	1 cut(s)	470
BsmI	GAATGC	1 cut(s)	312
BsnI	GGCC	1 cut(s)	198
Bso31I	GGTCTC	1 cut(s)	254
BsoBI	CYCGRG	1 cut(s)	497
Bsp1286I	GDGCHC	3 cut(s)	123, 141, 153
Bsp143I	GATC	4 cut(s)	294, 354, 402, 427
Bsp1720I	GCTNAGC	1 cut(s)	281
BspACI	CCGC	6 cut(s)	66, 69, 105, 159, 186, 371
BspANI	GGCC	1 cut(s)	198
BspCNI	CTCAG	2 cut(s)	273, 556
BspFNI	CGCG	1 cut(s)	293
BspLI	GGNNCC	3 cut(s)	6, 140, 152
BspPI	GGATC	1 cut(s)	410
BspTNI	GGTCTC	1 cut(s)	254
BsrI	ACTGG	3 cut(s)	144, 235, 540
BssECI	CCNNGG	3 cut(s)	108, 162, 496
BssMI	GATC	4 cut(s)	294, 354, 402, 427
BssNI	GRCGYC	1 cut(s)	345
Bst4CI	ACNGT	1 cut(s)	397
Bst6I	CTCTTC	1 cut(s)	537
BstACI	GRCGYC	1 cut(s)	345
BstC8I	GCNNGC	1 cut(s)	73
BstDEI	CTNAG	2 cut(s)	281, 564
BstF5I	GGATG	1 cut(s)	22
BstFNI	CGCG	1 cut(s)	293
BstHHI	GCGC	1 cut(s)	293
BstKTI	GATC	4 cut(s)	297, 357, 405, 430
BstMAI	GTCTC	1 cut(s)	254
BstMBI	GATC	4 cut(s)	294, 354, 402, 427
BstMCI	CGRYCG	1 cut(s)	199
BstSCI	CCNGG	2 cut(s)	25, 453
BstUI	CGCG	1 cut(s)	293
BstV2I	GAAGAC	1 cut(s)	106
BstZI	CGGCCG	1 cut(s)	196
BsuRI	GGCC	1 cut(s)	198
BtsCI	GGATG	1 cut(s)	22
BtsIMutI	CAGTG	2 cut(s)	151, 533
Cac8I	GCNNGC	1 cut(s)	73
CfoI	GCGC	1 cut(s)	293
Cfr13I	GGNCC	1 cut(s)	319
CseI	GACGC	1 cut(s)	430
Csp6I	GTAC	2 cut(s)	244, 253
CviQI	GTAC	2 cut(s)	244, 253
DdeI	CTNAG	2 cut(s)	281, 564
DpnI	GATC	4 cut(s)	296, 356, 404, 429
DpnII	GATC	4 cut(s)	294, 354, 402, 427
EaeI	YGGCCR	1 cut(s)	196
EagI	CGGCCG	1 cut(s)	196
Eam1104I	CTCTTC	1 cut(s)	537
EarI	CTCTTC	1 cut(s)	537
EciI	GGCGGA	2 cut(s)	94, 175
Ecl136II	GAGCTC	1 cut(s)	121
EclXI	CGGCCG	1 cut(s)	196
Eco24I	GRGCYC	3 cut(s)	123, 141, 153
Eco31I	GGTCTC	1 cut(s)	254
Eco47I	GGWCC	1 cut(s)	319
Eco52I	CGGCCG	1 cut(s)	196
Eco53kI	GAGCTC	1 cut(s)	121
Eco57I	CTGAAG	1 cut(s)	326
Eco88I	CYCGRG	1 cut(s)	497
EcoICRI	GAGCTC	1 cut(s)	121
EcoT38I	GRGCYC	3 cut(s)	123, 141, 153
FaiI	YATR	2 cut(s)	135, 231
FaqI	GGGAC	1 cut(s)	470
FauI	CCCGC	1 cut(s)	166
Fnu4HI	GCNGC	2 cut(s)	69, 371
FokI	GGATG	1 cut(s)	9
FriOI	GRGCYC	3 cut(s)	123, 141, 153
Fsp4HI	GCNGC	2 cut(s)	69, 371
GlaI	GCGC	1 cut(s)	292
GluI	GCNGC	2 cut(s)	69, 371
HaeIII	GGCC	1 cut(s)	198
HapII	CCGG	3 cut(s)	26, 273, 454
HgaI	GACGC	1 cut(s)	430
HhaI	GCGC	1 cut(s)	293
Hin1I	GRCGYC	1 cut(s)	345
Hin6I	GCGC	1 cut(s)	291
HinP1I	GCGC	1 cut(s)	291
HinfI	GANTC	2 cut(s)	98, 201
HpaII	CCGG	3 cut(s)	26, 273, 454
HphI	GGTGA	2 cut(s)	262, 385
Hpy166II	GTNNAC	1 cut(s)	253
Hpy188I	TCNGA	2 cut(s)	97, 379
Hpy188III	TCNNGA	1 cut(s)	436
Hpy8I	GTNNAC	1 cut(s)	253
Hpy99I	CGWCG	6 cut(s)	194, 197, 209, 212, 347, 350
HpyAV	CCTTC	1 cut(s)	301
HpyCH4III	ACNGT	1 cut(s)	397
HpyCH4IV	ACGT	2 cut(s)	179, 345
HpyF3I	CTNAG	2 cut(s)	281, 564
HpySE526I	ACGT	2 cut(s)	179, 345
Hsp92I	GRCGYC	1 cut(s)	345
HspAI	GCGC	1 cut(s)	291
Kzo9I	GATC	4 cut(s)	294, 354, 402, 427
LmnI	GCTCC	4 cut(s)	10, 144, 156, 301
LpnPI	CCDG	9 cut(s)	39, 157, 248, 286, 302, 343, 449, 467, 521
LweI	GCATC	1 cut(s)	543
MaeII	ACGT	2 cut(s)	179, 345
MalI	GATC	4 cut(s)	296, 356, 404, 429
MboI	GATC	4 cut(s)	294, 354, 402, 427
MboII	GAAGA	3 cut(s)	106, 551, 554
MhlI	GDGCHC	3 cut(s)	123, 141, 153
MlyI	GAGTC	1 cut(s)	92
MmeI	TCCRAC	2 cut(s)	120, 195
MspI	CCGG	3 cut(s)	26, 273, 454
MspR9I	CCNGG	2 cut(s)	27, 455
Mva1269I	GAATGC	1 cut(s)	312
MvnI	CGCG	1 cut(s)	293
NciI	CCSGG	2 cut(s)	27, 455
NdeII	GATC	4 cut(s)	294, 354, 402, 427
NlaIV	GGNNCC	3 cut(s)	6, 140, 152
PcsI	WCGNNNNNNNCGW	1 cut(s)	201
PctI	GAATGC	1 cut(s)	312
PfeI	GAWTC	1 cut(s)	201
PkrI	GCNGC	2 cut(s)	70, 372
PleI	GAGTC	1 cut(s)	92
PpsI	GAGTC	1 cut(s)	92
Psp124BI	GAGCTC	1 cut(s)	123
PspN4I	GGNNCC	3 cut(s)	6, 140, 152
PspPI	GGNCC	1 cut(s)	319
RsaI	GTAC	2 cut(s)	245, 254
RsaNI	GTAC	2 cut(s)	244, 253
SacI	GAGCTC	1 cut(s)	123
SatI	GCNGC	2 cut(s)	69, 371
Sau3AI	GATC	4 cut(s)	294, 354, 402, 427
Sau96I	GGNCC	1 cut(s)	319
ScaI	AGTACT	1 cut(s)	245
SchI	GAGTC	1 cut(s)	92
ScrFI	CCNGG	2 cut(s)	27, 455
SduI	GDGCHC	3 cut(s)	123, 141, 153
SetI	ASST	9 cut(s)	123, 182, 282, 287, 306, 321, 348, 420, 525
SfaNI	GCATC	1 cut(s)	543
SinI	GGWCC	1 cut(s)	319
SsiI	CCGC	6 cut(s)	66, 69, 105, 159, 186, 371
SstI	GAGCTC	1 cut(s)	123
StyD4I	CCNGG	2 cut(s)	25, 453
TaaI	ACNGT	1 cut(s)	397
TaiI	ACGT	2 cut(s)	182, 348
TaqI	TCGA	7 cut(s)	117, 240, 342, 348, 363, 420, 426
TaqII	GACCGA	1 cut(s)	100
TatI	WGTACW	2 cut(s)	243, 252
TauI	GCSGC	2 cut(s)	71, 373
TfiI	GAWTC	1 cut(s)	201
TscAI	CASTG	2 cut(s)	151, 540
TspGWI	ACGGA	1 cut(s)	314
TspRI	CASTG	2 cut(s)	151, 540
VpaK11BI	GGWCC	1 cut(s)	319
ZraI	GACGTC	1 cut(s)	346
ZrmI	AGTACT	1 cut(s)	245

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.