Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr3

Orthogroup ID

OG0006472

Physical Location & Seq

Genomic Coordinates Reverse (-)

624608 .. 627295

Gene Structure 2688 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom03g00800.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 540 bp

ATGTCACCGACCCCGAAACCCCATCTGGGTCTGATCCCGATCCTCCTCCTCTCTCTCTCCGTCATCCCAAGTCTCTCTCTTTCTCTCTCTGACTCCCCTCCCACAGTGTTTGACATTTTATCCAAATTCGGCCTTCCCCGCGGCCTCTTACCGGCATCGGTCTCCAACTACACGGTCTCCGACGACGGACGATTCGTCGTCGTTTTGCCCAAGACCTGCTACCTGCAGTTCGATTACTTGGTCTACTACGAAAAGACCATAACGGGCAAGCTCTCATACGGGGCGATCACCGACTTGAAGGGCATTCAGGTCCAGAGGTTCTTGTTCTGGCTCAGCGTCGGCGAGATCAGGGTCGATTTGCCGCCGTCCGATAGCATTTACTTCACTGTGGGGATCATCAATAAGAAGCTGGATATCGGTCAGTTCCAAAATGTGCGGTCTTGCCGTGACGGGTTATCGGGGTCTTGCGTCGGGTCGTTCAAACGGGGCATTCAGCTTCCATCTCCAGTGGAAGAAATTGAGATGCTAATAACCGAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF538

Protein Analysis

180

Amino Acids

19.72

Weight (kDa)

6.58

Isoelectric Point (pI)

44.45

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006472)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G19860
fragaria_vesca	FvH4_3g44860
malus_domestica	MD03G1007800.v1.1 MD11G1011000.v1.1
prunus_persica	Prupe.6G009800_v2.0.a1
pyrus_communis	pycom03g00800 pycom11g00690
rosa_chinensis	RchiOBHm_Chr5g0081571
rosa_laevigata	RLG00000036949 RLG00000036952
rosa_multiflora	Rmu_sc0002176.1_g000001 Rmu_sc0002245.1_g000027 Rmu_sc0002245.1_g000034 Rmu_sc0002706.1_g000006 Rmu_sc0002706.1_g000011 Rmu_sc0002706.1_g000017
rosa_roxburghii	Rroxscaffold_1G00001980
rosa_rugosa	Rorug05G0477400
rosa_samantha	Rh5AG528800 Rh5BG553500 Rh5BG553700 Rh5CG576500 Rh5CG576600 Rh5DG563700 Rh5DG563800
rosa_wichuraiana	Rw5G049200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	2 cut(s)	224, 231
AccI	GTMKAC	1 cut(s)	243
AccII	CGCG	1 cut(s)	141
AciI	CCGC	4 cut(s)	139, 141, 362, 436
AclWI	GGATC	3 cut(s)	28, 34, 401
AcsI	RAATTY	1 cut(s)	125
AfiI	CCNNNNNNNGG	2 cut(s)	26, 151
AgsI	TTSAA	2 cut(s)	298, 481
AhdI	GACNNNNNGTC	1 cut(s)	194
AluBI	AGCT	3 cut(s)	271, 409, 496
AluI	AGCT	3 cut(s)	271, 409, 496
Alw26I	GTCTC	3 cut(s)	77, 166, 181
AlwI	GGATC	3 cut(s)	28, 34, 401
AoxI	GGCC	2 cut(s)	130, 142
ApoI	RAATTY	1 cut(s)	125
ArsI	GACNNNNNNTTYG	2 cut(s)	176, 208
AspS9I	GGNCC	1 cut(s)	310
AsuHPI	GGTGA	1 cut(s)	280
AvaII	GGWCC	1 cut(s)	310
BccI	CCATC	2 cut(s)	30, 508
BceAI	ACGGC	2 cut(s)	349, 429
BcoDI	GTCTC	3 cut(s)	77, 166, 181
BfmI	CTRYAG	1 cut(s)	224
BfuAI	ACCTGC	2 cut(s)	224, 231
BisI	GCNGC	2 cut(s)	142, 362
BlpI	GCTNAGC	1 cut(s)	332
BlsI	GCNGC	2 cut(s)	143, 363
Bme18I	GGWCC	1 cut(s)	310
BmeRI	GACNNNNNGTC	1 cut(s)	194
BmgT120I	GGNCC	1 cut(s)	310
BmsI	GCATC	2 cut(s)	164, 513
BpmI	CTGGAG	1 cut(s)	489
Bpu1102I	GCTNAGC	1 cut(s)	332
BsaBI	GATNNNNATC	1 cut(s)	38
BsaI	GGTCTC	2 cut(s)	166, 181
BsaJI	CCNNGG	1 cut(s)	139
BsaXI	ACNNNNNCTCC	2 cut(s)	161, 191
Bsc4I	CCNNNNNNNGG	2 cut(s)	26, 151
Bse118I	RCCGGY	1 cut(s)	151
Bse1I	ACTGG	1 cut(s)	506
Bse8I	GATNNNNATC	1 cut(s)	38
BseDI	CCNNGG	1 cut(s)	139
BseGI	GGATG	1 cut(s)	63
BseJI	GATNNNNATC	1 cut(s)	38
BseLI	CCNNNNNNNGG	2 cut(s)	26, 151
BseMII	CTCAG	1 cut(s)	346
BseNI	ACTGG	1 cut(s)	506
BseRI	GAGGAG	2 cut(s)	35, 38
Bsh1236I	CGCG	1 cut(s)	141
BshFI	GGCC	2 cut(s)	132, 144
BsiSI	CCGG	1 cut(s)	152
BslI	CCNNNNNNNGG	2 cut(s)	26, 151
BsmAI	GTCTC	3 cut(s)	77, 166, 181
BsmI	GAATGC	2 cut(s)	303, 489
BsnI	GGCC	2 cut(s)	132, 144
Bso31I	GGTCTC	2 cut(s)	166, 181
Bsp143I	GATC	5 cut(s)	33, 39, 285, 345, 393
Bsp1720I	GCTNAGC	1 cut(s)	332
BspACI	CCGC	4 cut(s)	139, 141, 362, 436
BspANI	GGCC	2 cut(s)	132, 144
BspCNI	CTCAG	1 cut(s)	345
BspFNI	CGCG	1 cut(s)	141
BspMAI	CTGCAG	1 cut(s)	228
BspMI	ACCTGC	2 cut(s)	224, 231
BspPI	GGATC	3 cut(s)	28, 34, 401
BspTNI	GGTCTC	2 cut(s)	166, 181
BsrFI	RCCGGY	1 cut(s)	151
BsrI	ACTGG	1 cut(s)	506
BssAI	RCCGGY	1 cut(s)	151
BssECI	CCNNGG	1 cut(s)	139
BssMI	GATC	5 cut(s)	33, 39, 285, 345, 393
Bst4CI	ACNGT	3 cut(s)	106, 175, 388
BstC8I	GCNNGC	1 cut(s)	269
BstDEI	CTNAG	1 cut(s)	332
BstDSI	CCRYGG	1 cut(s)	139
BstF5I	GGATG	1 cut(s)	63
BstFNI	CGCG	1 cut(s)	141
BstKTI	GATC	5 cut(s)	36, 42, 288, 348, 396
BstMAI	GTCTC	3 cut(s)	77, 166, 181
BstMBI	GATC	5 cut(s)	33, 39, 285, 345, 393
BstMWI	GCNNNNNNNGC	1 cut(s)	138
BstSFI	CTRYAG	1 cut(s)	224
BstUI	CGCG	1 cut(s)	141
BsuRI	GGCC	2 cut(s)	132, 144
BtgI	CCRYGG	1 cut(s)	139
BtsCI	GGATG	1 cut(s)	63
BtsIMutI	CAGTG	3 cut(s)	111, 384, 513
BveI	ACCTGC	2 cut(s)	224, 231
Cac8I	GCNNGC	1 cut(s)	269
Cfr10I	RCCGGY	1 cut(s)	151
Cfr13I	GGNCC	1 cut(s)	310
Cfr42I	CCGCGG	1 cut(s)	142
CseI	GACGC	2 cut(s)	325, 457
CspCI	CAANNNNNGTGG	2 cut(s)	91, 126
CviJI	RGCY	6 cut(s)	132, 144, 271, 331, 409, 496
CviKI_1	RGCY	6 cut(s)	132, 144, 271, 331, 409, 496
DdeI	CTNAG	1 cut(s)	332
DpnI	GATC	5 cut(s)	35, 41, 287, 347, 395
DpnII	GATC	5 cut(s)	33, 39, 285, 345, 393
DriI	GACNNNNNGTC	1 cut(s)	194
Eam1105I	GACNNNNNGTC	1 cut(s)	194
Eco31I	GGTCTC	2 cut(s)	166, 181
Eco32I	GATATC	1 cut(s)	415
Eco47I	GGWCC	1 cut(s)	310
EcoRV	GATATC	1 cut(s)	415
FaiI	YATR	2 cut(s)	260, 277
FauI	CCCGC	1 cut(s)	146
FblI	GTMKAC	1 cut(s)	243
Fnu4HI	GCNGC	2 cut(s)	142, 362
FokI	GGATG	1 cut(s)	50
Fsp4HI	GCNGC	2 cut(s)	142, 362
GluI	GCNGC	2 cut(s)	142, 362
GsuI	CTGGAG	1 cut(s)	489
HaeIII	GGCC	2 cut(s)	132, 144
HapII	CCGG	1 cut(s)	152
HgaI	GACGC	2 cut(s)	325, 457
HinfI	GANTC	2 cut(s)	92, 192
HpaII	CCGG	1 cut(s)	152
HphI	GGTGA	1 cut(s)	280
Hpy166II	GTNNAC	1 cut(s)	244
Hpy188I	TCNGA	4 cut(s)	33, 91, 181, 370
Hpy188III	TCNNGA	2 cut(s)	37, 313
Hpy8I	GTNNAC	1 cut(s)	244
Hpy99I	CGWCG	6 cut(s)	185, 188, 200, 203, 341, 473
HpyAV	CCTTC	2 cut(s)	143, 292
HpyCH4III	ACNGT	3 cut(s)	106, 175, 388
HpyCH4V	TGCA	1 cut(s)	226
HpyF10VI	GCNNNNNNNGC	1 cut(s)	138
HpyF3I	CTNAG	1 cut(s)	332
KspI	CCGCGG	1 cut(s)	142
Kzo9I	GATC	5 cut(s)	33, 39, 285, 345, 393
LweI	GCATC	2 cut(s)	164, 513
MaeIII	GTNAC	2 cut(s)	3, 446
MalI	GATC	5 cut(s)	35, 41, 287, 347, 395
MboI	GATC	5 cut(s)	33, 39, 285, 345, 393
MboII	GAAGA	1 cut(s)	524
MluCI	AATT	2 cut(s)	125, 516
MlyI	GAGTC	1 cut(s)	86
MmeI	TCCRAC	2 cut(s)	189, 204
MnlI	CCTC	6 cut(s)	53, 56, 59, 108, 155, 309
MspA1I	CMGCKG	1 cut(s)	141
MspI	CCGG	1 cut(s)	152
Mva1269I	GAATGC	2 cut(s)	303, 489
MvnI	CGCG	1 cut(s)	141
MwoI	GCNNNNNNNGC	1 cut(s)	138
NdeII	GATC	5 cut(s)	33, 39, 285, 345, 393
NmuCI	GTSAC	2 cut(s)	3, 446
PcsI	WCGNNNNNNNCGW	1 cut(s)	192
PctI	GAATGC	2 cut(s)	303, 489
PfeI	GAWTC	1 cut(s)	192
PkrI	GCNGC	2 cut(s)	143, 363
PleI	GAGTC	1 cut(s)	86
PpsI	GAGTC	1 cut(s)	86
PspPI	GGNCC	1 cut(s)	310
PstI	CTGCAG	1 cut(s)	228
SacII	CCGCGG	1 cut(s)	142
SatI	GCNGC	2 cut(s)	142, 362
Sau3AI	GATC	5 cut(s)	33, 39, 285, 345, 393
Sau96I	GGNCC	1 cut(s)	310
SchI	GAGTC	1 cut(s)	86
SetI	ASST	7 cut(s)	218, 225, 273, 312, 320, 411, 498
SfaNI	GCATC	2 cut(s)	164, 513
SfcI	CTRYAG	1 cut(s)	224
Sfr303I	CCGCGG	1 cut(s)	142
SgrBI	CCGCGG	1 cut(s)	142
SinI	GGWCC	1 cut(s)	310
Sse9I	AATT	2 cut(s)	125, 516
SsiI	CCGC	4 cut(s)	139, 141, 362, 436
TaaI	ACNGT	3 cut(s)	106, 175, 388
TaqI	TCGA	2 cut(s)	231, 354
TaqII	GACCGA	2 cut(s)	148, 407
TasI	AATT	2 cut(s)	125, 516
TauI	GCSGC	2 cut(s)	144, 364
TfiI	GAWTC	1 cut(s)	192
TscAI	CASTG	3 cut(s)	111, 391, 513
TseFI	GTSAC	2 cut(s)	3, 446
Tsp45I	GTSAC	2 cut(s)	3, 446
TspGWI	ACGGA	2 cut(s)	49, 201
TspRI	CASTG	3 cut(s)	111, 391, 513
VpaK11BI	GGWCC	1 cut(s)	310
XapI	RAATTY	1 cut(s)	125
XmiI	GTMKAC	1 cut(s)	243

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.